Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 196 |
| Acc36I | ACCTGC | 1 cut(s) | 196 |
| AccB1I | GGYRCC | 1 cut(s) | 51 |
| AciI | CCGC | 3 cut(s) | 116, 177, 419 |
| AclWI | GGATC | 2 cut(s) | 90, 104 |
| AcvI | CACGTG | 1 cut(s) | 273 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 62, 112, 205 |
| AflIII | ACRYGT | 1 cut(s) | 270 |
| AjnI | CCWGG | 1 cut(s) | 159 |
| AluBI | AGCT | 2 cut(s) | 221, 254 |
| AluI | AGCT | 2 cut(s) | 221, 254 |
| Alw26I | GTCTC | 1 cut(s) | 82 |
| AlwI | GGATC | 2 cut(s) | 90, 104 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 285 |
| AoxI | GGCC | 3 cut(s) | 11, 102, 196 |
| AspS9I | GGNCC | 3 cut(s) | 11, 103, 157 |
| AsuC2I | CCSGG | 1 cut(s) | 56 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 28, 312, 370 |
| AsuII | TTCGAA | 1 cut(s) | 187 |
| AvaII | GGWCC | 1 cut(s) | 157 |
| BaeGI | GKGCMC | 1 cut(s) | 54 |
| BanI | GGYRCC | 1 cut(s) | 51 |
| BbrPI | CACGTG | 1 cut(s) | 273 |
| BceAI | ACGGC | 1 cut(s) | 406 |
| BciT130I | CCWGG | 1 cut(s) | 161 |
| BclI | TGATCA | 1 cut(s) | 382 |
| BcnI | CCSGG | 1 cut(s) | 56 |
| BcoDI | GTCTC | 1 cut(s) | 82 |
| BfaI | CTAG | 2 cut(s) | 351, 372 |
| BfuAI | ACCTGC | 1 cut(s) | 196 |
| BglII | AGATCT | 1 cut(s) | 150 |
| BisI | GCNGC | 1 cut(s) | 419 |
| BlsI | GCNGC | 1 cut(s) | 420 |
| Bme1390I | CCNGG | 2 cut(s) | 56, 161 |
| Bme18I | GGWCC | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 3 cut(s) | 11, 103, 157 |
| BmiI | GGNNCC | 1 cut(s) | 53 |
| BmrFI | CCNGG | 2 cut(s) | 56, 161 |
| BmsI | GCATC | 2 cut(s) | 192, 297 |
| Bpu14I | TTCGAA | 1 cut(s) | 187 |
| BpuMI | CCSGG | 1 cut(s) | 56 |
| BsaAI | YACGTR | 1 cut(s) | 273 |
| BsaJI | CCNNGG | 2 cut(s) | 99, 160 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 62, 112, 205 |
| Bse118I | RCCGGY | 1 cut(s) | 38 |
| Bse1I | ACTGG | 1 cut(s) | 67 |
| BseBI | CCWGG | 1 cut(s) | 161 |
| BseDI | CCNNGG | 2 cut(s) | 99, 160 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 62, 112, 205 |
| BseMII | CTCAG | 1 cut(s) | 95 |
| BseNI | ACTGG | 1 cut(s) | 67 |
| BseSI | GKGCMC | 1 cut(s) | 54 |
| Bsh1285I | CGRYCG | 1 cut(s) | 181 |
| BshFI | GGCC | 3 cut(s) | 13, 104, 198 |
| BshNI | GGYRCC | 1 cut(s) | 51 |
| BsiEI | CGRYCG | 1 cut(s) | 181 |
| BsiSI | CCGG | 4 cut(s) | 39, 56, 113, 214 |
| BslFI | GGGAC | 1 cut(s) | 267 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 62, 112, 205 |
| BsmAI | GTCTC | 1 cut(s) | 82 |
| BsmFI | GGGAC | 1 cut(s) | 267 |
| BsnI | GGCC | 3 cut(s) | 13, 104, 198 |
| Bsp119I | TTCGAA | 1 cut(s) | 187 |
| Bsp1286I | GDGCHC | 1 cut(s) | 54 |
| Bsp143I | GATC | 4 cut(s) | 95, 109, 150, 382 |
| BspACI | CCGC | 3 cut(s) | 116, 177, 419 |
| BspANI | GGCC | 3 cut(s) | 13, 104, 198 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspHI | TCATGA | 1 cut(s) | 412 |
| BspLI | GGNNCC | 1 cut(s) | 53 |
| BspMI | ACCTGC | 1 cut(s) | 196 |
| BspPI | GGATC | 2 cut(s) | 90, 104 |
| BspT104I | TTCGAA | 1 cut(s) | 187 |
| BspT107I | GGYRCC | 1 cut(s) | 51 |
| BsrFI | RCCGGY | 1 cut(s) | 38 |
| BsrI | ACTGG | 1 cut(s) | 67 |
| BssAI | RCCGGY | 1 cut(s) | 38 |
| BssECI | CCNNGG | 2 cut(s) | 99, 160 |
| BssMI | GATC | 4 cut(s) | 95, 109, 150, 382 |
| BssT1I | CCWWGG | 1 cut(s) | 99 |
| Bst2UI | CCWGG | 1 cut(s) | 161 |
| Bst4CI | ACNGT | 1 cut(s) | 233 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 285 |
| BstBAI | YACGTR | 1 cut(s) | 273 |
| BstBI | TTCGAA | 1 cut(s) | 187 |
| BstC8I | GCNNGC | 1 cut(s) | 219 |
| BstDEI | CTNAG | 1 cut(s) | 81 |
| BstKTI | GATC | 4 cut(s) | 98, 112, 153, 385 |
| BstMAI | GTCTC | 1 cut(s) | 82 |
| BstMBI | GATC | 4 cut(s) | 95, 109, 150, 382 |
| BstMCI | CGRYCG | 1 cut(s) | 181 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 285, 415 |
| BstNI | CCWGG | 1 cut(s) | 161 |
| BstSCI | CCNGG | 2 cut(s) | 54, 159 |
| BstSLI | GKGCMC | 1 cut(s) | 54 |
| BstX2I | RGATCY | 1 cut(s) | 150 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 400 |
| BstYI | RGATCY | 1 cut(s) | 150 |
| BsuRI | GGCC | 3 cut(s) | 13, 104, 198 |
| BveI | ACCTGC | 1 cut(s) | 196 |
| Cac8I | GCNNGC | 1 cut(s) | 219 |
| CaiI | CAGNNNCTG | 1 cut(s) | 285 |
| CciI | TCATGA | 1 cut(s) | 412 |
| Cfr10I | RCCGGY | 1 cut(s) | 38 |
| Cfr13I | GGNCC | 3 cut(s) | 11, 103, 157 |
| CseI | GACGC | 1 cut(s) | 398 |
| CviAII | CATG | 6 cut(s) | 22, 74, 247, 327, 386, 413 |
| CviJI | RGCY | 8 cut(s) | 13, 42, 104, 184, 198, 221, 254, 418 |
| CviKI_1 | RGCY | 8 cut(s) | 13, 42, 104, 184, 198, 221, 254, 418 |
| DdeI | CTNAG | 1 cut(s) | 81 |
| DpnI | GATC | 4 cut(s) | 97, 111, 152, 384 |
| DpnII | GATC | 4 cut(s) | 95, 109, 150, 382 |
| EciI | GGCGGA | 1 cut(s) | 131 |
| Eco130I | CCWWGG | 1 cut(s) | 99 |
| Eco47I | GGWCC | 1 cut(s) | 157 |
| Eco72I | CACGTG | 1 cut(s) | 273 |
| EcoRII | CCWGG | 1 cut(s) | 159 |
| EcoT14I | CCWWGG | 1 cut(s) | 99 |
| ErhI | CCWWGG | 1 cut(s) | 99 |
| FaeI | CATG | 6 cut(s) | 25, 77, 250, 330, 389, 416 |
| FaiI | YATR | 6 cut(s) | 23, 75, 248, 328, 387, 414 |
| FaqI | GGGAC | 1 cut(s) | 267 |
| FatI | CATG | 6 cut(s) | 21, 73, 246, 326, 385, 412 |
| FbaI | TGATCA | 1 cut(s) | 382 |
| Fnu4HI | GCNGC | 1 cut(s) | 419 |
| Fsp4HI | GCNGC | 1 cut(s) | 419 |
| FspBI | CTAG | 2 cut(s) | 351, 372 |
| GluI | GCNGC | 1 cut(s) | 419 |
| HaeIII | GGCC | 3 cut(s) | 13, 104, 198 |
| HapII | CCGG | 4 cut(s) | 39, 56, 113, 214 |
| HgaI | GACGC | 1 cut(s) | 398 |
| Hin1II | CATG | 6 cut(s) | 25, 77, 250, 330, 389, 416 |
| HincII | GTYRAC | 1 cut(s) | 68 |
| HindII | GTYRAC | 1 cut(s) | 68 |
| HindIII | AAGCTT | 1 cut(s) | 219 |
| HpaII | CCGG | 4 cut(s) | 39, 56, 113, 214 |
| HphI | GGTGA | 4 cut(s) | 16, 28, 312, 370 |
| Hpy166II | GTNNAC | 3 cut(s) | 68, 320, 361 |
| Hpy188I | TCNGA | 2 cut(s) | 229, 382 |
| Hpy188III | TCNNGA | 3 cut(s) | 83, 401, 413 |
| Hpy8I | GTNNAC | 3 cut(s) | 68, 320, 361 |
| HpyCH4III | ACNGT | 1 cut(s) | 233 |
| HpyCH4IV | ACGT | 1 cut(s) | 272 |
| HpyCH4V | TGCA | 3 cut(s) | 205, 288, 367 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 285, 415 |
| HpyF3I | CTNAG | 1 cut(s) | 81 |
| HpySE526I | ACGT | 1 cut(s) | 272 |
| Hsp92II | CATG | 6 cut(s) | 25, 77, 250, 330, 389, 416 |
| Ksp22I | TGATCA | 1 cut(s) | 382 |
| Kzo9I | GATC | 4 cut(s) | 95, 109, 150, 382 |
| LmnI | GCTCC | 2 cut(s) | 251, 276 |
| LweI | GCATC | 2 cut(s) | 192, 297 |
| MaeI | CTAG | 2 cut(s) | 351, 372 |
| MaeII | ACGT | 1 cut(s) | 272 |
| MaeIII | GTNAC | 1 cut(s) | 233 |
| MalI | GATC | 4 cut(s) | 97, 111, 152, 384 |
| MboI | GATC | 4 cut(s) | 95, 109, 150, 382 |
| MboII | GAAGA | 1 cut(s) | 389 |
| MflI | RGATCY | 1 cut(s) | 150 |
| MhlI | GDGCHC | 1 cut(s) | 54 |
| MmeI | TCCRAC | 2 cut(s) | 115, 207 |
| MnlI | CCTC | 3 cut(s) | 235, 302, 324 |
| MseI | TTAA | 1 cut(s) | 144 |
| MslI | CAYNNNNRTG | 1 cut(s) | 325 |
| MspI | CCGG | 4 cut(s) | 39, 56, 113, 214 |
| MspR9I | CCNGG | 2 cut(s) | 56, 161 |
| MvaI | CCWGG | 1 cut(s) | 161 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 285, 415 |
| NciI | CCSGG | 1 cut(s) | 56 |
| NdeII | GATC | 4 cut(s) | 95, 109, 150, 382 |
| NlaIII | CATG | 6 cut(s) | 25, 77, 250, 330, 389, 416 |
| NlaIV | GGNNCC | 1 cut(s) | 53 |
| NspV | TTCGAA | 1 cut(s) | 187 |
| PagI | TCATGA | 1 cut(s) | 412 |
| PaqCI | CACCTGC | 1 cut(s) | 196 |
| PkrI | GCNGC | 1 cut(s) | 420 |
| PmaCI | CACGTG | 1 cut(s) | 273 |
| PmlI | CACGTG | 1 cut(s) | 273 |
| Ppu21I | YACGTR | 1 cut(s) | 273 |
| Psp6I | CCWGG | 1 cut(s) | 159 |
| PspCI | CACGTG | 1 cut(s) | 273 |
| PspGI | CCWGG | 1 cut(s) | 159 |
| PspN4I | GGNNCC | 1 cut(s) | 53 |
| PspPI | GGNCC | 3 cut(s) | 11, 103, 157 |
| PstNI | CAGNNNCTG | 1 cut(s) | 285 |
| PsuI | RGATCY | 1 cut(s) | 150 |
| RseI | CAYNNNNRTG | 1 cut(s) | 325 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SatI | GCNGC | 1 cut(s) | 419 |
| Sau3AI | GATC | 4 cut(s) | 95, 109, 150, 382 |
| Sau96I | GGNCC | 3 cut(s) | 11, 103, 157 |
| ScrFI | CCNGG | 2 cut(s) | 56, 161 |
| SduI | GDGCHC | 1 cut(s) | 54 |
| SetI | ASST | 5 cut(s) | 162, 210, 223, 256, 275 |
| SfaNI | GCATC | 2 cut(s) | 192, 297 |
| SfuI | TTCGAA | 1 cut(s) | 187 |
| SinI | GGWCC | 1 cut(s) | 157 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 325 |
| SsiI | CCGC | 3 cut(s) | 116, 177, 419 |
| SspMI | CTAG | 2 cut(s) | 351, 372 |
| StyD4I | CCNGG | 2 cut(s) | 54, 159 |
| StyI | CCWWGG | 1 cut(s) | 99 |
| TaaI | ACNGT | 1 cut(s) | 233 |
| TaiI | ACGT | 1 cut(s) | 275 |
| TaqI | TCGA | 1 cut(s) | 187 |
| TauI | GCSGC | 1 cut(s) | 421 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| VpaK11BI | GGWCC | 1 cut(s) | 157 |
| XspI | CTAG | 2 cut(s) | 351, 372 |