ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1286 |
| Acc16I | TGCGCA | 1 cut(s) | 384 |
| AccIII | TCCGGA | 2 cut(s) | 243, 1513 |
| AciI | CCGC | 6 cut(s) | 141, 1129, 1425, 1891, 2475, 2480 |
| AclWI | GGATC | 9 cut(s) | 174, 241, 254, 1117, 1130, 1604, 1716, 2024, 2117 |
| AcoI | YGGCCR | 2 cut(s) | 448, 477 |
| AcsI | RAATTY | 6 cut(s) | 417, 535, 709, 780, 819, 2490 |
| AcuI | CTGAAG | 2 cut(s) | 738, 2217 |
| AcyI | GRCGYC | 3 cut(s) | 151, 281, 1283 |
| AfaI | GTAC | 5 cut(s) | 145, 428, 454, 2097, 2231 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 315, 457, 2012 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1270 |
| AhlI | ACTAGT | 1 cut(s) | 505 |
| AjnI | CCWGG | 4 cut(s) | 356, 915, 959, 1456 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1688, 1720 |
| AleI | CACNNNNGTG | 1 cut(s) | 1772 |
| Alw21I | GWGCWC | 6 cut(s) | 613, 752, 1392, 1526, 1558, 1572 |
| Alw26I | GTCTC | 9 cut(s) | 230, 400, 435, 587, 667, 901, 1627, 2043, 2180 |
| Alw44I | GTGCAC | 1 cut(s) | 1522 |
| AlwI | GGATC | 9 cut(s) | 174, 241, 254, 1117, 1130, 1604, 1716, 2024, 2117 |
| Ama87I | CYCGRG | 3 cut(s) | 298, 745, 1549 |
| Aor13HI | TCCGGA | 2 cut(s) | 243, 1513 |
| AoxI | GGCC | 5 cut(s) | 448, 477, 1329, 1459, 2590 |
| ApaLI | GTGCAC | 1 cut(s) | 1522 |
| ApeKI | GCWGC | 5 cut(s) | 123, 636, 1034, 1817, 2314 |
| ApoI | RAATTY | 6 cut(s) | 417, 535, 709, 780, 819, 2490 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 713 |
| AspLEI | GCGC | 4 cut(s) | 385, 471, 557, 1645 |
| AspS9I | GGNCC | 3 cut(s) | 1330, 1460, 1511 |
| AsuC2I | CCSGG | 3 cut(s) | 299, 300, 1746 |
| AsuHPI | GGTGA | 8 cut(s) | 346, 524, 1253, 1570, 1642, 1939, 1987, 1994 |
| AvaI | CYCGRG | 3 cut(s) | 298, 745, 1549 |
| AvaII | GGWCC | 1 cut(s) | 1511 |
| BaeGI | GKGCMC | 1 cut(s) | 1526 |
| BalI | TGGCCA | 1 cut(s) | 479 |
| BamHI | GGATCC | 2 cut(s) | 246, 1122 |
| BanII | GRGCYC | 3 cut(s) | 392, 1392, 1572 |
| BbsI | GAAGAC | 1 cut(s) | 1467 |
| Bbv12I | GWGCWC | 6 cut(s) | 613, 752, 1392, 1526, 1558, 1572 |
| BbvCI | CCTCAGC | 2 cut(s) | 1107, 1626 |
| BbvI | GCAGC | 5 cut(s) | 110, 648, 1021, 1829, 2326 |
| BccI | CCATC | 7 cut(s) | 271, 595, 802, 1188, 1307, 1453, 1460 |
| BceAI | ACGGC | 3 cut(s) | 435, 1185, 1542 |
| BciT130I | CCWGG | 4 cut(s) | 358, 917, 961, 1458 |
| BciVI | GTATCC | 1 cut(s) | 1729 |
| BclI | TGATCA | 1 cut(s) | 1935 |
| BcnI | CCSGG | 3 cut(s) | 299, 300, 1746 |
| BcoDI | GTCTC | 9 cut(s) | 230, 400, 435, 587, 667, 901, 1627, 2043, 2180 |
| BcuI | ACTAGT | 1 cut(s) | 505 |
| BfmI | CTRYAG | 2 cut(s) | 1815, 2594 |
| BfoI | RGCGCY | 1 cut(s) | 558 |
| BfuI | GTATCC | 1 cut(s) | 1729 |
| BglII | AGATCT | 1 cut(s) | 722 |
| BisI | GCNGC | 7 cut(s) | 124, 637, 1035, 1425, 1818, 1891, 2315 |
| BlsI | GCNGC | 7 cut(s) | 125, 638, 1036, 1426, 1819, 1892, 2316 |
| Bme1390I | CCNGG | 7 cut(s) | 299, 300, 358, 917, 961, 1458, 1746 |
| Bme18I | GGWCC | 1 cut(s) | 1511 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1270 |
| BmeT110I | CYCGRG | 3 cut(s) | 298, 745, 1549 |
| BmgT120I | GGNCC | 3 cut(s) | 1330, 1460, 1511 |
| BmiI | GGNNCC | 4 cut(s) | 248, 391, 1124, 1462 |
| BmrFI | CCNGG | 7 cut(s) | 299, 300, 358, 917, 961, 1458, 1746 |
| BpiI | GAAGAC | 1 cut(s) | 1467 |
| BpmI | CTGGAG | 2 cut(s) | 254, 1356 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1107, 1626 |
| BpuEI | CTTGAG | 1 cut(s) | 1886 |
| BpuMI | CCSGG | 3 cut(s) | 299, 300, 1746 |
| Bsa29I | ATCGAT | 3 cut(s) | 378, 1867, 2365 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2574 |
| BsaHI | GRCGYC | 3 cut(s) | 151, 281, 1283 |
| BsaI | GGTCTC | 2 cut(s) | 435, 1627 |
| BsaJI | CCNNGG | 6 cut(s) | 297, 298, 445, 497, 1326, 1548 |
| BsaWI | WCCGGW | 4 cut(s) | 243, 1513, 1662, 2249 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 685, 715 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 315, 457, 2012 |
| Bse118I | RCCGGY | 3 cut(s) | 331, 471, 1561 |
| Bse1I | ACTGG | 1 cut(s) | 2104 |
| Bse3DI | GCAATG | 2 cut(s) | 491, 1724 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2574 |
| BseAI | TCCGGA | 2 cut(s) | 243, 1513 |
| BseBI | CCWGG | 4 cut(s) | 358, 917, 961, 1458 |
| BseCI | ATCGAT | 3 cut(s) | 378, 1867, 2365 |
| BseDI | CCNNGG | 6 cut(s) | 297, 298, 445, 497, 1326, 1548 |
| BseGI | GGATG | 6 cut(s) | 282, 324, 850, 1476, 1522, 2246 |
| BseJI | GATNNNNATC | 1 cut(s) | 2574 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 315, 457, 2012 |
| BseMI | GCAATG | 2 cut(s) | 491, 1724 |
| BseMII | CTCAG | 6 cut(s) | 213, 587, 1098, 1391, 1617, 2319 |
| BseNI | ACTGG | 1 cut(s) | 2104 |
| BseRI | GAGGAG | 1 cut(s) | 549 |
| BseSI | GKGCMC | 1 cut(s) | 1526 |
| BseXI | GCAGC | 5 cut(s) | 110, 648, 1021, 1829, 2326 |
| BseYI | CCCAGC | 1 cut(s) | 1154 |
| BshFI | GGCC | 5 cut(s) | 450, 479, 1331, 1461, 2592 |
| BshVI | ATCGAT | 3 cut(s) | 378, 1867, 2365 |
| BsiHKAI | GWGCWC | 6 cut(s) | 613, 752, 1392, 1526, 1558, 1572 |
| BsiHKCI | CYCGRG | 3 cut(s) | 298, 745, 1549 |
| BsiSI | CCGG | 9 cut(s) | 244, 299, 332, 472, 1514, 1562, 1663, 1746, 2250 |
| BslFI | GGGAC | 1 cut(s) | 1172 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 315, 457, 2012 |
| BsmAI | GTCTC | 9 cut(s) | 230, 400, 435, 587, 667, 901, 1627, 2043, 2180 |
| BsmFI | GGGAC | 1 cut(s) | 1172 |
| BsnI | GGCC | 5 cut(s) | 450, 479, 1331, 1461, 2592 |
| Bso31I | GGTCTC | 2 cut(s) | 435, 1627 |
| BsoBI | CYCGRG | 3 cut(s) | 298, 745, 1549 |
| Bsp1286I | GDGCHC | 7 cut(s) | 392, 613, 752, 1392, 1526, 1558, 1572 |
| Bsp13I | TCCGGA | 2 cut(s) | 243, 1513 |
| Bsp1407I | TGTACA | 1 cut(s) | 2229 |
| Bsp19I | CCATGG | 1 cut(s) | 1326 |
| BspACI | CCGC | 6 cut(s) | 141, 1129, 1425, 1891, 2475, 2480 |
| BspANI | GGCC | 5 cut(s) | 450, 479, 1331, 1461, 2592 |
| BspCNI | CTCAG | 6 cut(s) | 214, 586, 1099, 1390, 1618, 2320 |
| BspDI | ATCGAT | 3 cut(s) | 378, 1867, 2365 |
| BspEI | TCCGGA | 2 cut(s) | 243, 1513 |
| BspHI | TCATGA | 2 cut(s) | 1384, 1938 |
| BspLI | GGNNCC | 4 cut(s) | 248, 391, 1124, 1462 |
| BspMAI | CTGCAG | 1 cut(s) | 1819 |
| BspPI | GGATC | 9 cut(s) | 174, 241, 254, 1117, 1130, 1604, 1716, 2024, 2117 |
| BspTNI | GGTCTC | 2 cut(s) | 435, 1627 |
| BsrDI | GCAATG | 2 cut(s) | 491, 1724 |
| BsrFI | RCCGGY | 3 cut(s) | 331, 471, 1561 |
| BsrGI | TGTACA | 1 cut(s) | 2229 |
| BsrI | ACTGG | 1 cut(s) | 2104 |
| BssAI | RCCGGY | 3 cut(s) | 331, 471, 1561 |
| BssECI | CCNNGG | 6 cut(s) | 297, 298, 445, 497, 1326, 1548 |
| BssNI | GRCGYC | 3 cut(s) | 151, 281, 1283 |
| BssT1I | CCWWGG | 2 cut(s) | 497, 1326 |
| Bst2UI | CCWGG | 4 cut(s) | 358, 917, 961, 1458 |
| Bst4CI | ACNGT | 7 cut(s) | 44, 446, 608, 1412, 1957, 2174, 2518 |
| Bst6I | CTCTTC | 1 cut(s) | 2267 |
| BstACI | GRCGYC | 3 cut(s) | 151, 281, 1283 |
| BstAUI | TGTACA | 1 cut(s) | 2229 |
| BstC8I | GCNNGC | 5 cut(s) | 473, 477, 582, 2120, 2590 |
| BstDEI | CTNAG | 7 cut(s) | 222, 573, 1107, 1377, 1393, 1626, 2328 |
| BstDSI | CCRYGG | 2 cut(s) | 445, 1326 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2010 |
| BstF5I | GGATG | 6 cut(s) | 282, 324, 850, 1476, 1522, 2246 |
| BstH2I | RGCGCY | 1 cut(s) | 558 |
| BstHHI | GCGC | 4 cut(s) | 385, 471, 557, 1645 |
| BstMAI | GTCTC | 9 cut(s) | 230, 400, 435, 587, 667, 901, 1627, 2043, 2180 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 129, 138, 956, 1562, 2135 |
| BstNI | CCWGG | 4 cut(s) | 358, 917, 961, 1458 |
| BstNSI | RCATGY | 2 cut(s) | 1505, 2122 |
| BstSCI | CCNGG | 7 cut(s) | 297, 298, 356, 915, 959, 1456, 1744 |
| BstSFI | CTRYAG | 2 cut(s) | 1815, 2594 |
| BstSLI | GKGCMC | 1 cut(s) | 1526 |
| BstV1I | GCAGC | 5 cut(s) | 110, 648, 1021, 1829, 2326 |
| BstV2I | GAAGAC | 1 cut(s) | 1467 |
| BstX2I | RGATCY | 5 cut(s) | 166, 246, 722, 1122, 1708 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 402, 923 |
| BstYI | RGATCY | 5 cut(s) | 166, 246, 722, 1122, 1708 |
| Bsu15I | ATCGAT | 3 cut(s) | 378, 1867, 2365 |
| BsuI | GTATCC | 1 cut(s) | 1729 |
| BsuRI | GGCC | 5 cut(s) | 450, 479, 1331, 1461, 2592 |
| BsuTUI | ATCGAT | 3 cut(s) | 378, 1867, 2365 |
| BtgI | CCRYGG | 2 cut(s) | 445, 1326 |
| BtsCI | GGATG | 6 cut(s) | 282, 324, 850, 1476, 1522, 2246 |
| BtsIMutI | CAGTG | 2 cut(s) | 1953, 2111 |
| Cac8I | GCNNGC | 5 cut(s) | 473, 477, 582, 2120, 2590 |
| CciI | TCATGA | 2 cut(s) | 1384, 1938 |
| CfoI | GCGC | 4 cut(s) | 385, 471, 557, 1645 |
| Cfr10I | RCCGGY | 3 cut(s) | 331, 471, 1561 |
| Cfr13I | GGNCC | 3 cut(s) | 1330, 1460, 1511 |
| Cfr9I | CCCGGG | 1 cut(s) | 298 |
| ClaI | ATCGAT | 3 cut(s) | 378, 1867, 2365 |
| CseI | GACGC | 4 cut(s) | 159, 270, 742, 1179 |
| Csp6I | GTAC | 5 cut(s) | 144, 427, 453, 2096, 2230 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1767, 1802 |
| CviQI | GTAC | 5 cut(s) | 144, 427, 453, 2096, 2230 |
| DdeI | CTNAG | 7 cut(s) | 222, 573, 1107, 1377, 1393, 1626, 2328 |
| DraI | TTTAAA | 3 cut(s) | 985, 1950, 2001 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1270 |
| EaeI | YGGCCR | 2 cut(s) | 448, 477 |
| Eam1104I | CTCTTC | 1 cut(s) | 2267 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1270 |
| EarI | CTCTTC | 1 cut(s) | 2267 |
| Ecl136II | GAGCTC | 2 cut(s) | 1390, 1570 |
| Eco130I | CCWWGG | 2 cut(s) | 497, 1326 |
| Eco24I | GRGCYC | 3 cut(s) | 392, 1392, 1572 |
| Eco31I | GGTCTC | 2 cut(s) | 435, 1627 |
| Eco32I | GATATC | 1 cut(s) | 1849 |
| Eco47I | GGWCC | 1 cut(s) | 1511 |
| Eco53kI | GAGCTC | 2 cut(s) | 1390, 1570 |
| Eco57I | CTGAAG | 2 cut(s) | 738, 2217 |
| Eco88I | CYCGRG | 3 cut(s) | 298, 745, 1549 |
| EcoICRI | GAGCTC | 2 cut(s) | 1390, 1570 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2010 |
| EcoRII | CCWGG | 4 cut(s) | 356, 915, 959, 1456 |
| EcoRV | GATATC | 1 cut(s) | 1849 |
| EcoT14I | CCWWGG | 2 cut(s) | 497, 1326 |
| EcoT22I | ATGCAT | 1 cut(s) | 134 |
| EcoT38I | GRGCYC | 3 cut(s) | 392, 1392, 1572 |
| ErhI | CCWWGG | 2 cut(s) | 497, 1326 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1083, 1115, 2418, 2450 |
| FaqI | GGGAC | 1 cut(s) | 1172 |
| FauI | CCCGC | 1 cut(s) | 2473 |
| FauNDI | CATATG | 4 cut(s) | 1584, 1861, 2236, 2298 |
| FbaI | TGATCA | 1 cut(s) | 1935 |
| Fnu4HI | GCNGC | 7 cut(s) | 124, 637, 1035, 1425, 1818, 1891, 2315 |
| FokI | GGATG | 6 cut(s) | 289, 331, 837, 1483, 1529, 2233 |
| FriOI | GRGCYC | 3 cut(s) | 392, 1392, 1572 |
| Fsp4HI | GCNGC | 7 cut(s) | 124, 637, 1035, 1425, 1818, 1891, 2315 |
| FspI | TGCGCA | 1 cut(s) | 384 |
| GlaI | GCGC | 4 cut(s) | 384, 470, 556, 1644 |
| GluI | GCNGC | 7 cut(s) | 124, 637, 1035, 1425, 1818, 1891, 2315 |
| GsaI | CCCAGC | 1 cut(s) | 1158 |
| GsuI | CTGGAG | 2 cut(s) | 254, 1356 |
| HaeII | RGCGCY | 1 cut(s) | 558 |
| HaeIII | GGCC | 5 cut(s) | 450, 479, 1331, 1461, 2592 |
| HapII | CCGG | 9 cut(s) | 244, 299, 332, 472, 1514, 1562, 1663, 1746, 2250 |
| HgaI | GACGC | 4 cut(s) | 159, 270, 742, 1179 |
| HhaI | GCGC | 4 cut(s) | 385, 471, 557, 1645 |
| Hin1I | GRCGYC | 3 cut(s) | 151, 281, 1283 |
| Hin6I | GCGC | 4 cut(s) | 383, 469, 555, 1643 |
| HinP1I | GCGC | 4 cut(s) | 383, 469, 555, 1643 |
| HincII | GTYRAC | 2 cut(s) | 913, 2255 |
| HindII | GTYRAC | 2 cut(s) | 913, 2255 |
| HindIII | AAGCTT | 2 cut(s) | 582, 2432 |
| HinfI | GANTC | 9 cut(s) | 238, 290, 303, 904, 1271, 1336, 1369, 1381, 1930 |
| HpaII | CCGG | 9 cut(s) | 244, 299, 332, 472, 1514, 1562, 1663, 1746, 2250 |
| HphI | GGTGA | 8 cut(s) | 346, 524, 1253, 1570, 1642, 1939, 1987, 1994 |
| Hpy166II | GTNNAC | 8 cut(s) | 146, 790, 913, 1244, 1524, 2232, 2255, 2263 |
| Hpy8I | GTNNAC | 8 cut(s) | 146, 790, 913, 1244, 1524, 2232, 2255, 2263 |
| Hpy99I | CGWCG | 2 cut(s) | 153, 736 |
| HpyAV | CCTTC | 3 cut(s) | 53, 1594, 2060 |
| HpyCH4III | ACNGT | 7 cut(s) | 44, 446, 608, 1412, 1957, 2174, 2518 |
| HpyCH4IV | ACGT | 2 cut(s) | 1233, 1283 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 129, 138, 956, 1562, 2135 |
| HpyF3I | CTNAG | 7 cut(s) | 222, 573, 1107, 1377, 1393, 1626, 2328 |
| HpySE526I | ACGT | 2 cut(s) | 1233, 1283 |
| Hsp92I | GRCGYC | 3 cut(s) | 151, 281, 1283 |
| HspAI | GCGC | 4 cut(s) | 383, 469, 555, 1643 |
| Kpn2I | TCCGGA | 2 cut(s) | 243, 1513 |
| KroI | GCCGGC | 1 cut(s) | 471 |
| KroNI | GCCGGC | 1 cut(s) | 473 |
| Ksp22I | TGATCA | 1 cut(s) | 1935 |
| LmnI | GCTCC | 6 cut(s) | 395, 562, 1042, 1402, 1459, 2134 |
| Lsp1109I | GCAGC | 5 cut(s) | 110, 648, 1021, 1829, 2326 |
| MaeII | ACGT | 2 cut(s) | 1233, 1283 |
| MaeIII | GTNAC | 9 cut(s) | 79, 107, 370, 501, 1229, 1249, 1279, 1366, 1961 |
| MfeI | CAATTG | 1 cut(s) | 1917 |
| MflI | RGATCY | 5 cut(s) | 166, 246, 722, 1122, 1708 |
| MhlI | GDGCHC | 7 cut(s) | 392, 613, 752, 1392, 1526, 1558, 1572 |
| MlsI | TGGCCA | 1 cut(s) | 479 |
| MluNI | TGGCCA | 1 cut(s) | 479 |
| MlyI | GAGTC | 5 cut(s) | 232, 299, 312, 1280, 1363 |
| MmeI | TCCRAC | 2 cut(s) | 1218, 2435 |
| Mox20I | TGGCCA | 1 cut(s) | 479 |
| Mph1103I | ATGCAT | 1 cut(s) | 134 |
| MroI | TCCGGA | 2 cut(s) | 243, 1513 |
| MroNI | GCCGGC | 1 cut(s) | 471 |
| MroXI | GAANNNNTTC | 1 cut(s) | 713 |
| MscI | TGGCCA | 1 cut(s) | 479 |
| MseI | TTAA | 5 cut(s) | 933, 984, 1949, 2000, 2471 |
| MslI | CAYNNNNRTG | 4 cut(s) | 366, 1583, 1772, 2117 |
| Msp20I | TGGCCA | 1 cut(s) | 479 |
| MspA1I | CMGCKG | 4 cut(s) | 232, 1106, 1129, 2581 |
| MspI | CCGG | 9 cut(s) | 244, 299, 332, 472, 1514, 1562, 1663, 1746, 2250 |
| MspR9I | CCNGG | 7 cut(s) | 299, 300, 358, 917, 961, 1458, 1746 |
| MssI | GTTTAAAC | 1 cut(s) | 985 |
| MunI | CAATTG | 1 cut(s) | 1917 |
| MvaI | CCWGG | 4 cut(s) | 358, 917, 961, 1458 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 129, 138, 956, 1562, 2135 |
| NaeI | GCCGGC | 1 cut(s) | 473 |
| NciI | CCSGG | 3 cut(s) | 299, 300, 1746 |
| NcoI | CCATGG | 1 cut(s) | 1326 |
| NdeI | CATATG | 4 cut(s) | 1584, 1861, 2236, 2298 |
| NgoMIV | GCCGGC | 1 cut(s) | 471 |
| NlaIV | GGNNCC | 4 cut(s) | 248, 391, 1124, 1462 |
| NmeAIII | GCCGAG | 1 cut(s) | 179 |
| NmuCI | GTSAC | 3 cut(s) | 79, 1279, 1366 |
| NsbI | TGCGCA | 1 cut(s) | 384 |
| NsiI | ATGCAT | 1 cut(s) | 134 |
| NspI | RCATGY | 2 cut(s) | 1505, 2122 |
| OliI | CACNNNNGTG | 1 cut(s) | 1772 |
| PaeI | GCATGC | 1 cut(s) | 2122 |
| PagI | TCATGA | 2 cut(s) | 1384, 1938 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1280 |
| PdiI | GCCGGC | 1 cut(s) | 473 |
| PdmI | GAANNNNTTC | 1 cut(s) | 713 |
| PfeI | GAWTC | 4 cut(s) | 904, 1336, 1381, 1930 |
| PkrI | GCNGC | 7 cut(s) | 125, 638, 1036, 1426, 1819, 1892, 2316 |
| PleI | GAGTC | 5 cut(s) | 232, 298, 311, 1279, 1363 |
| PmeI | GTTTAAAC | 1 cut(s) | 985 |
| PpsI | GAGTC | 5 cut(s) | 232, 298, 311, 1279, 1363 |
| Psp124BI | GAGCTC | 2 cut(s) | 1392, 1572 |
| Psp6I | CCWGG | 4 cut(s) | 356, 915, 959, 1456 |
| PspFI | CCCAGC | 1 cut(s) | 1154 |
| PspGI | CCWGG | 4 cut(s) | 356, 915, 959, 1456 |
| PspN4I | GGNNCC | 4 cut(s) | 248, 391, 1124, 1462 |
| PspPI | GGNCC | 3 cut(s) | 1330, 1460, 1511 |
| PstI | CTGCAG | 1 cut(s) | 1819 |
| PsuI | RGATCY | 5 cut(s) | 166, 246, 722, 1122, 1708 |
| PvuII | CAGCTG | 3 cut(s) | 232, 1106, 2581 |
| RsaI | GTAC | 5 cut(s) | 145, 428, 454, 2097, 2231 |
| RsaNI | GTAC | 5 cut(s) | 144, 427, 453, 2096, 2230 |
| RseI | CAYNNNNRTG | 4 cut(s) | 366, 1583, 1772, 2117 |
| SacI | GAGCTC | 2 cut(s) | 1392, 1572 |
| SaqAI | TTAA | 5 cut(s) | 933, 984, 1949, 2000, 2471 |
| SatI | GCNGC | 7 cut(s) | 124, 637, 1035, 1425, 1818, 1891, 2315 |
| Sau96I | GGNCC | 3 cut(s) | 1330, 1460, 1511 |
| SchI | GAGTC | 5 cut(s) | 232, 299, 312, 1280, 1363 |
| ScrFI | CCNGG | 7 cut(s) | 299, 300, 358, 917, 961, 1458, 1746 |
| SduI | GDGCHC | 7 cut(s) | 392, 613, 752, 1392, 1526, 1558, 1572 |
| SfcI | CTRYAG | 2 cut(s) | 1815, 2594 |
| SinI | GGWCC | 1 cut(s) | 1511 |
| SmaI | CCCGGG | 1 cut(s) | 300 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 366, 1583, 1772, 2117 |
| SmlI | CTYRAG | 1 cut(s) | 1901 |
| SmoI | CTYRAG | 1 cut(s) | 1901 |
| SpeI | ACTAGT | 1 cut(s) | 505 |
| SphI | GCATGC | 1 cut(s) | 2122 |
| SsiI | CCGC | 6 cut(s) | 141, 1129, 1425, 1891, 2475, 2480 |
| SspI | AATATT | 1 cut(s) | 2224 |
| SstI | GAGCTC | 2 cut(s) | 1392, 1572 |
| StyD4I | CCNGG | 7 cut(s) | 297, 298, 356, 915, 959, 1456, 1744 |
| StyI | CCWWGG | 2 cut(s) | 497, 1326 |
| TaaI | ACNGT | 7 cut(s) | 44, 446, 608, 1412, 1957, 2174, 2518 |
| TaiI | ACGT | 2 cut(s) | 1236, 1286 |
| TaqI | TCGA | 6 cut(s) | 378, 562, 682, 1044, 1867, 2365 |
| TatI | WGTACW | 1 cut(s) | 2229 |
| TauI | GCSGC | 2 cut(s) | 1427, 1893 |
| TfiI | GAWTC | 4 cut(s) | 904, 1336, 1381, 1930 |
| Tru1I | TTAA | 5 cut(s) | 933, 984, 1949, 2000, 2471 |
| Tru9I | TTAA | 5 cut(s) | 933, 984, 1949, 2000, 2471 |
| TscAI | CASTG | 2 cut(s) | 1960, 2111 |
| TseFI | GTSAC | 3 cut(s) | 79, 1279, 1366 |
| TseI | GCWGC | 5 cut(s) | 123, 636, 1034, 1817, 2314 |
| Tsp45I | GTSAC | 3 cut(s) | 79, 1279, 1366 |
| TspDTI | ATGAA | 7 cut(s) | 335, 1038, 2064, 2138, 2315, 2549, 2564 |
| TspMI | CCCGGG | 1 cut(s) | 298 |
| TspRI | CASTG | 2 cut(s) | 1960, 2111 |
| VneI | GTGCAC | 1 cut(s) | 1522 |
| VpaK11BI | GGWCC | 1 cut(s) | 1511 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2010 |
| XapI | RAATTY | 6 cut(s) | 417, 535, 709, 780, 819, 2490 |
| XbaI | TCTAGA | 1 cut(s) | 1345 |
| XceI | RCATGY | 2 cut(s) | 1505, 2122 |
| XmaI | CCCGGG | 1 cut(s) | 298 |
| XmnI | GAANNNNTTC | 1 cut(s) | 713 |
| ZraI | GACGTC | 1 cut(s) | 1284 |
| Zsp2I | ATGCAT | 1 cut(s) | 134 |