ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 514 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 70 |
| AccI | GTMKAC | 1 cut(s) | 362 |
| AcsI | RAATTY | 1 cut(s) | 575 |
| AfaI | GTAC | 3 cut(s) | 48, 140, 347 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 33, 70 |
| AflIII | ACRYGT | 1 cut(s) | 429 |
| AgeI | ACCGGT | 1 cut(s) | 49 |
| AgsI | TTSAA | 2 cut(s) | 238, 581 |
| AhlI | ACTAGT | 1 cut(s) | 659 |
| AjnI | CCWGG | 1 cut(s) | 16 |
| AluBI | AGCT | 2 cut(s) | 394, 641 |
| AluI | AGCT | 2 cut(s) | 394, 641 |
| Alw21I | GWGCWC | 1 cut(s) | 103 |
| Alw26I | GTCTC | 4 cut(s) | 18, 114, 164, 707 |
| Ama87I | CYCGRG | 1 cut(s) | 102 |
| ApeKI | GCWGC | 4 cut(s) | 354, 391, 638, 641 |
| ApoI | RAATTY | 1 cut(s) | 575 |
| AsiGI | ACCGGT | 1 cut(s) | 49 |
| AspS9I | GGNCC | 1 cut(s) | 622 |
| AvaI | CYCGRG | 1 cut(s) | 102 |
| AvaII | GGWCC | 1 cut(s) | 622 |
| BanI | GGYRCC | 1 cut(s) | 514 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 573, 605 |
| Bbv12I | GWGCWC | 1 cut(s) | 103 |
| BbvI | GCAGC | 4 cut(s) | 366, 403, 628, 650 |
| BccI | CCATC | 1 cut(s) | 594 |
| BceAI | ACGGC | 1 cut(s) | 157 |
| BciT130I | CCWGG | 1 cut(s) | 18 |
| BclI | TGATCA | 1 cut(s) | 475 |
| BcoDI | GTCTC | 4 cut(s) | 18, 114, 164, 707 |
| BcuI | ACTAGT | 1 cut(s) | 659 |
| BfaI | CTAG | 3 cut(s) | 465, 609, 660 |
| BfmI | CTRYAG | 1 cut(s) | 414 |
| BisI | GCNGC | 4 cut(s) | 355, 392, 639, 642 |
| BlsI | GCNGC | 4 cut(s) | 356, 393, 640, 643 |
| Bme1390I | CCNGG | 1 cut(s) | 18 |
| Bme18I | GGWCC | 1 cut(s) | 622 |
| BmeT110I | CYCGRG | 1 cut(s) | 102 |
| BmgT120I | GGNCC | 1 cut(s) | 622 |
| BmiI | GGNNCC | 3 cut(s) | 516, 623, 624 |
| BmrFI | CCNGG | 1 cut(s) | 18 |
| BmrI | ACTGGG | 1 cut(s) | 627 |
| BmsI | GCATC | 2 cut(s) | 174, 285 |
| BmuI | ACTGGG | 1 cut(s) | 627 |
| BoxI | GACNNNNGTC | 1 cut(s) | 402 |
| BpmI | CTGGAG | 1 cut(s) | 96 |
| BsaAI | YACGTR | 1 cut(s) | 593 |
| BsaI | GGTCTC | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 2 cut(s) | 215, 384 |
| BsaWI | WCCGGW | 1 cut(s) | 49 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 33, 70 |
| Bse118I | RCCGGY | 1 cut(s) | 49 |
| Bse1I | ACTGG | 2 cut(s) | 518, 622 |
| BseBI | CCWGG | 1 cut(s) | 18 |
| BseDI | CCNNGG | 2 cut(s) | 215, 384 |
| BseGI | GGATG | 5 cut(s) | 42, 141, 460, 568, 605 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 33, 70 |
| BseMII | CTCAG | 2 cut(s) | 305, 731 |
| BseNI | ACTGG | 2 cut(s) | 518, 622 |
| BseRI | GAGGAG | 1 cut(s) | 288 |
| BseXI | GCAGC | 4 cut(s) | 366, 403, 628, 650 |
| BshNI | GGYRCC | 1 cut(s) | 514 |
| BshTI | ACCGGT | 1 cut(s) | 49 |
| BsiHKAI | GWGCWC | 1 cut(s) | 103 |
| BsiHKCI | CYCGRG | 1 cut(s) | 102 |
| BsiSI | CCGG | 2 cut(s) | 50, 512 |
| BslFI | GGGAC | 2 cut(s) | 440, 635 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 33, 70 |
| BsmAI | GTCTC | 4 cut(s) | 18, 114, 164, 707 |
| BsmFI | GGGAC | 2 cut(s) | 440, 635 |
| Bso31I | GGTCTC | 1 cut(s) | 114 |
| BsoBI | CYCGRG | 1 cut(s) | 102 |
| Bsp1286I | GDGCHC | 1 cut(s) | 103 |
| Bsp143I | GATC | 1 cut(s) | 475 |
| BspCNI | CTCAG | 2 cut(s) | 304, 730 |
| BspLI | GGNNCC | 3 cut(s) | 516, 623, 624 |
| BspMAI | CTGCAG | 1 cut(s) | 418 |
| BspT107I | GGYRCC | 1 cut(s) | 514 |
| BspTNI | GGTCTC | 1 cut(s) | 114 |
| BsrFI | RCCGGY | 1 cut(s) | 49 |
| BsrI | ACTGG | 2 cut(s) | 518, 622 |
| BssAI | RCCGGY | 1 cut(s) | 49 |
| BssECI | CCNNGG | 2 cut(s) | 215, 384 |
| BssMI | GATC | 1 cut(s) | 475 |
| BssNAI | GTATAC | 1 cut(s) | 363 |
| BssT1I | CCWWGG | 2 cut(s) | 215, 384 |
| Bst1107I | GTATAC | 1 cut(s) | 363 |
| Bst2UI | CCWGG | 1 cut(s) | 18 |
| Bst4CI | ACNGT | 2 cut(s) | 482, 538 |
| Bst6I | CTCTTC | 2 cut(s) | 442, 524 |
| BstBAI | YACGTR | 1 cut(s) | 593 |
| BstDEI | CTNAG | 2 cut(s) | 291, 717 |
| BstF5I | GGATG | 5 cut(s) | 42, 141, 460, 568, 605 |
| BstKTI | GATC | 1 cut(s) | 478 |
| BstMAI | GTCTC | 4 cut(s) | 18, 114, 164, 707 |
| BstMBI | GATC | 1 cut(s) | 475 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 674 |
| BstNI | CCWGG | 1 cut(s) | 18 |
| BstNSI | RCATGY | 2 cut(s) | 83, 433 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 402 |
| BstSCI | CCNGG | 1 cut(s) | 16 |
| BstSFI | CTRYAG | 1 cut(s) | 414 |
| BstV1I | GCAGC | 4 cut(s) | 366, 403, 628, 650 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 120 |
| BstZ17I | GTATAC | 1 cut(s) | 363 |
| BtsCI | GGATG | 5 cut(s) | 42, 141, 460, 568, 605 |
| BtsIMutI | CAGTG | 1 cut(s) | 543 |
| Cfr10I | RCCGGY | 1 cut(s) | 49 |
| Cfr13I | GGNCC | 1 cut(s) | 622 |
| Csp6I | GTAC | 3 cut(s) | 47, 139, 346 |
| CspAI | ACCGGT | 1 cut(s) | 49 |
| CviAII | CATG | 5 cut(s) | 80, 366, 430, 678, 697 |
| CviJI | RGCY | 8 cut(s) | 144, 290, 357, 394, 563, 641, 688, 722 |
| CviKI_1 | RGCY | 8 cut(s) | 144, 290, 357, 394, 563, 641, 688, 722 |
| CviQI | GTAC | 3 cut(s) | 47, 139, 346 |
| DdeI | CTNAG | 2 cut(s) | 291, 717 |
| DpnI | GATC | 1 cut(s) | 477 |
| DpnII | GATC | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 2 cut(s) | 442, 524 |
| EarI | CTCTTC | 2 cut(s) | 442, 524 |
| Eco130I | CCWWGG | 2 cut(s) | 215, 384 |
| Eco31I | GGTCTC | 1 cut(s) | 114 |
| Eco32I | GATATC | 1 cut(s) | 207 |
| Eco47I | GGWCC | 1 cut(s) | 622 |
| Eco88I | CYCGRG | 1 cut(s) | 102 |
| EcoO109I | RGGNCCY | 1 cut(s) | 622 |
| EcoRII | CCWGG | 1 cut(s) | 16 |
| EcoRV | GATATC | 1 cut(s) | 207 |
| EcoT14I | CCWWGG | 2 cut(s) | 215, 384 |
| ErhI | CCWWGG | 2 cut(s) | 215, 384 |
| FaeI | CATG | 5 cut(s) | 83, 369, 433, 681, 700 |
| FaqI | GGGAC | 2 cut(s) | 440, 635 |
| FatI | CATG | 5 cut(s) | 79, 365, 429, 677, 696 |
| FbaI | TGATCA | 1 cut(s) | 475 |
| FblI | GTMKAC | 1 cut(s) | 362 |
| Fnu4HI | GCNGC | 4 cut(s) | 355, 392, 639, 642 |
| FokI | GGATG | 5 cut(s) | 49, 148, 447, 555, 612 |
| Fsp4HI | GCNGC | 4 cut(s) | 355, 392, 639, 642 |
| FspBI | CTAG | 3 cut(s) | 465, 609, 660 |
| GluI | GCNGC | 4 cut(s) | 355, 392, 639, 642 |
| GsuI | CTGGAG | 1 cut(s) | 96 |
| HapII | CCGG | 2 cut(s) | 50, 512 |
| Hin1II | CATG | 5 cut(s) | 83, 369, 433, 681, 700 |
| HinfI | GANTC | 3 cut(s) | 11, 403, 715 |
| HpaII | CCGG | 2 cut(s) | 50, 512 |
| Hpy166II | GTNNAC | 1 cut(s) | 363 |
| Hpy188I | TCNGA | 5 cut(s) | 294, 373, 475, 545, 704 |
| Hpy188III | TCNNGA | 3 cut(s) | 113, 572, 732 |
| Hpy8I | GTNNAC | 1 cut(s) | 363 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 1 cut(s) | 313 |
| HpyCH4III | ACNGT | 2 cut(s) | 482, 538 |
| HpyCH4IV | ACGT | 1 cut(s) | 592 |
| HpyCH4V | TGCA | 3 cut(s) | 298, 416, 644 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 674 |
| HpyF3I | CTNAG | 2 cut(s) | 291, 717 |
| HpySE526I | ACGT | 1 cut(s) | 592 |
| Hsp92II | CATG | 5 cut(s) | 83, 369, 433, 681, 700 |
| KflI | GGGWCCC | 1 cut(s) | 622 |
| Ksp22I | TGATCA | 1 cut(s) | 475 |
| Kzo9I | GATC | 1 cut(s) | 475 |
| LmnI | GCTCC | 2 cut(s) | 216, 388 |
| Lsp1109I | GCAGC | 4 cut(s) | 366, 403, 628, 650 |
| LweI | GCATC | 2 cut(s) | 174, 285 |
| MaeI | CTAG | 3 cut(s) | 465, 609, 660 |
| MaeII | ACGT | 1 cut(s) | 592 |
| MaeIII | GTNAC | 1 cut(s) | 613 |
| MalI | GATC | 1 cut(s) | 477 |
| MboI | GATC | 1 cut(s) | 475 |
| MboII | GAAGA | 4 cut(s) | 128, 429, 541, 593 |
| MhlI | GDGCHC | 1 cut(s) | 103 |
| MluCI | AATT | 4 cut(s) | 419, 554, 575, 691 |
| MlyI | GAGTC | 3 cut(s) | 20, 412, 709 |
| MnlI | CCTC | 6 cut(s) | 266, 304, 451, 519, 525, 590 |
| MseI | TTAA | 3 cut(s) | 54, 422, 651 |
| MslI | CAYNNNNRTG | 1 cut(s) | 84 |
| MspA1I | CMGCKG | 1 cut(s) | 641 |
| MspI | CCGG | 2 cut(s) | 50, 512 |
| MspR9I | CCNGG | 1 cut(s) | 18 |
| MvaI | CCWGG | 1 cut(s) | 18 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 674 |
| NdeII | GATC | 1 cut(s) | 475 |
| NlaIII | CATG | 5 cut(s) | 83, 369, 433, 681, 700 |
| NlaIV | GGNNCC | 3 cut(s) | 516, 623, 624 |
| NspI | RCATGY | 2 cut(s) | 83, 433 |
| PciI | ACATGT | 1 cut(s) | 429 |
| PflFI | GACNNNGTC | 1 cut(s) | 175 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 70 |
| PinAI | ACCGGT | 1 cut(s) | 49 |
| PkrI | GCNGC | 4 cut(s) | 356, 393, 640, 643 |
| PleI | GAGTC | 3 cut(s) | 19, 411, 709 |
| PpsI | GAGTC | 3 cut(s) | 19, 411, 709 |
| Ppu21I | YACGTR | 1 cut(s) | 593 |
| PpuMI | RGGWCCY | 1 cut(s) | 622 |
| PscI | ACATGT | 1 cut(s) | 429 |
| PshAI | GACNNNNGTC | 1 cut(s) | 402 |
| Psp5II | RGGWCCY | 1 cut(s) | 622 |
| Psp6I | CCWGG | 1 cut(s) | 16 |
| PspGI | CCWGG | 1 cut(s) | 16 |
| PspN4I | GGNNCC | 3 cut(s) | 516, 623, 624 |
| PspPI | GGNCC | 1 cut(s) | 622 |
| PspPPI | RGGWCCY | 1 cut(s) | 622 |
| PstI | CTGCAG | 1 cut(s) | 418 |
| PsyI | GACNNNGTC | 1 cut(s) | 175 |
| PvuII | CAGCTG | 1 cut(s) | 641 |
| RsaI | GTAC | 3 cut(s) | 48, 140, 347 |
| RsaNI | GTAC | 3 cut(s) | 47, 139, 346 |
| RseI | CAYNNNNRTG | 1 cut(s) | 84 |
| SaqAI | TTAA | 3 cut(s) | 54, 422, 651 |
| SatI | GCNGC | 4 cut(s) | 355, 392, 639, 642 |
| Sau3AI | GATC | 1 cut(s) | 475 |
| Sau96I | GGNCC | 1 cut(s) | 622 |
| SchI | GAGTC | 3 cut(s) | 20, 412, 709 |
| ScrFI | CCNGG | 1 cut(s) | 18 |
| SduI | GDGCHC | 1 cut(s) | 103 |
| SetI | ASST | 7 cut(s) | 22, 305, 396, 595, 643, 711, 731 |
| SfaNI | GCATC | 2 cut(s) | 174, 285 |
| SfcI | CTRYAG | 1 cut(s) | 414 |
| SinI | GGWCC | 1 cut(s) | 622 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 84 |
| SpeI | ACTAGT | 1 cut(s) | 659 |
| Sse9I | AATT | 4 cut(s) | 419, 554, 575, 691 |
| SspI | AATATT | 1 cut(s) | 246 |
| SspMI | CTAG | 3 cut(s) | 465, 609, 660 |
| StyD4I | CCNGG | 1 cut(s) | 16 |
| StyI | CCWWGG | 2 cut(s) | 215, 384 |
| TaaI | ACNGT | 2 cut(s) | 482, 538 |
| TaiI | ACGT | 1 cut(s) | 595 |
| TaqI | TCGA | 1 cut(s) | 151 |
| TasI | AATT | 4 cut(s) | 419, 554, 575, 691 |
| Tru1I | TTAA | 3 cut(s) | 54, 422, 651 |
| Tru9I | TTAA | 3 cut(s) | 54, 422, 651 |
| TscAI | CASTG | 1 cut(s) | 543 |
| TseI | GCWGC | 4 cut(s) | 354, 391, 638, 641 |
| TspDTI | ATGAA | 4 cut(s) | 53, 255, 449, 685 |
| TspGWI | ACGGA | 3 cut(s) | 178, 215, 296 |
| TspRI | CASTG | 1 cut(s) | 543 |
| Tth111I | GACNNNGTC | 1 cut(s) | 175 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 70 |
| VpaK11BI | GGWCC | 1 cut(s) | 622 |
| XapI | RAATTY | 1 cut(s) | 575 |
| XceI | RCATGY | 2 cut(s) | 83, 433 |
| XmiI | GTMKAC | 1 cut(s) | 362 |
| XspI | CTAG | 3 cut(s) | 465, 609, 660 |