Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 188, 616 |
| AcoI | YGGCCR | 2 cut(s) | 489, 510 |
| AfaI | GTAC | 1 cut(s) | 572 |
| AfeI | AGCGCT | 1 cut(s) | 584 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 222, 364, 408 |
| AgsI | TTSAA | 4 cut(s) | 83, 169, 430, 602 |
| AjnI | CCWGG | 1 cut(s) | 108 |
| Alw26I | GTCTC | 2 cut(s) | 151, 293 |
| Aor51HI | AGCGCT | 1 cut(s) | 584 |
| AoxI | GGCC | 4 cut(s) | 63, 463, 489, 510 |
| ApaI | GGGCCC | 1 cut(s) | 67 |
| ApeKI | GCWGC | 3 cut(s) | 338, 476, 479 |
| AspLEI | GCGC | 1 cut(s) | 585 |
| AspS9I | GGNCC | 3 cut(s) | 63, 64, 464 |
| AsuHPI | GGTGA | 2 cut(s) | 142, 434 |
| AsuII | TTCGAA | 1 cut(s) | 499 |
| BaeGI | GKGCMC | 1 cut(s) | 67 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 225, 225, 258, 258 |
| BalI | TGGCCA | 2 cut(s) | 491, 512 |
| BanII | GRGCYC | 2 cut(s) | 67, 622 |
| BbvI | GCAGC | 3 cut(s) | 350, 488, 491 |
| BciT130I | CCWGG | 1 cut(s) | 110 |
| BcoDI | GTCTC | 2 cut(s) | 151, 293 |
| BfaI | CTAG | 3 cut(s) | 96, 122, 383 |
| BfmI | CTRYAG | 1 cut(s) | 31 |
| BfoI | RGCGCY | 1 cut(s) | 586 |
| BisI | GCNGC | 3 cut(s) | 339, 477, 480 |
| BlsI | GCNGC | 3 cut(s) | 340, 478, 481 |
| Bme1390I | CCNGG | 1 cut(s) | 110 |
| BmgT120I | GGNCC | 3 cut(s) | 63, 64, 464 |
| BmiI | GGNNCC | 2 cut(s) | 65, 466 |
| BmrFI | CCNGG | 1 cut(s) | 110 |
| BmsI | GCATC | 1 cut(s) | 133 |
| BpmI | CTGGAG | 1 cut(s) | 480 |
| Bpu14I | TTCGAA | 1 cut(s) | 499 |
| BsaAI | YACGTR | 1 cut(s) | 558 |
| BsaBI | GATNNNNATC | 1 cut(s) | 256 |
| BsaJI | CCNNGG | 2 cut(s) | 407, 486 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 222, 364, 408 |
| Bse1I | ACTGG | 1 cut(s) | 325 |
| Bse8I | GATNNNNATC | 1 cut(s) | 256 |
| BseBI | CCWGG | 1 cut(s) | 110 |
| BseDI | CCNNGG | 2 cut(s) | 407, 486 |
| BseGI | GGATG | 3 cut(s) | 15, 214, 372 |
| BseJI | GATNNNNATC | 1 cut(s) | 256 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 222, 364, 408 |
| BseMII | CTCAG | 1 cut(s) | 218 |
| BseNI | ACTGG | 1 cut(s) | 325 |
| BseRI | GAGGAG | 1 cut(s) | 311 |
| BseSI | GKGCMC | 1 cut(s) | 67 |
| BseXI | GCAGC | 3 cut(s) | 350, 488, 491 |
| BshFI | GGCC | 4 cut(s) | 65, 465, 491, 512 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 222, 364, 408 |
| BsmAI | GTCTC | 2 cut(s) | 151, 293 |
| BsmI | GAATGC | 1 cut(s) | 232 |
| BsnI | GGCC | 4 cut(s) | 65, 465, 491, 512 |
| Bsp119I | TTCGAA | 1 cut(s) | 499 |
| Bsp120I | GGGCCC | 1 cut(s) | 63 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 622 |
| Bsp143I | GATC | 4 cut(s) | 219, 251, 257, 520 |
| Bsp19I | CCATGG | 2 cut(s) | 407, 486 |
| BspACI | CCGC | 2 cut(s) | 188, 616 |
| BspANI | GGCC | 4 cut(s) | 65, 465, 491, 512 |
| BspCNI | CTCAG | 1 cut(s) | 217 |
| BspLI | GGNNCC | 2 cut(s) | 65, 466 |
| BspMAI | CTGCAG | 1 cut(s) | 35 |
| BspQI | GCTCTTC | 1 cut(s) | 466 |
| BspT104I | TTCGAA | 1 cut(s) | 499 |
| BsrI | ACTGG | 1 cut(s) | 325 |
| BssECI | CCNNGG | 2 cut(s) | 407, 486 |
| BssMI | GATC | 4 cut(s) | 219, 251, 257, 520 |
| BssT1I | CCWWGG | 2 cut(s) | 407, 486 |
| Bst2UI | CCWGG | 1 cut(s) | 110 |
| Bst4CI | ACNGT | 2 cut(s) | 518, 635 |
| Bst6I | CTCTTC | 1 cut(s) | 466 |
| BstBAI | YACGTR | 1 cut(s) | 558 |
| BstBI | TTCGAA | 1 cut(s) | 499 |
| BstC8I | GCNNGC | 2 cut(s) | 397, 618 |
| BstDEI | CTNAG | 1 cut(s) | 204 |
| BstDSI | CCRYGG | 2 cut(s) | 407, 486 |
| BstF5I | GGATG | 3 cut(s) | 15, 214, 372 |
| BstH2I | RGCGCY | 1 cut(s) | 586 |
| BstHHI | GCGC | 1 cut(s) | 585 |
| BstKTI | GATC | 4 cut(s) | 222, 254, 260, 523 |
| BstMAI | GTCTC | 2 cut(s) | 151, 293 |
| BstMBI | GATC | 4 cut(s) | 219, 251, 257, 520 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 392, 488 |
| BstNI | CCWGG | 1 cut(s) | 110 |
| BstNSI | RCATGY | 1 cut(s) | 399 |
| BstSCI | CCNGG | 1 cut(s) | 108 |
| BstSFI | CTRYAG | 1 cut(s) | 31 |
| BstSLI | GKGCMC | 1 cut(s) | 67 |
| BstV1I | GCAGC | 3 cut(s) | 350, 488, 491 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 161 |
| BsuRI | GGCC | 4 cut(s) | 65, 465, 491, 512 |
| BtgI | CCRYGG | 2 cut(s) | 407, 486 |
| BtsCI | GGATG | 3 cut(s) | 15, 214, 372 |
| Cac8I | GCNNGC | 2 cut(s) | 397, 618 |
| CfoI | GCGC | 1 cut(s) | 585 |
| Cfr13I | GGNCC | 3 cut(s) | 63, 64, 464 |
| Csp6I | GTAC | 1 cut(s) | 571 |
| CviAII | CATG | 6 cut(s) | 8, 239, 396, 408, 439, 487 |
| CviQI | GTAC | 1 cut(s) | 571 |
| DdeI | CTNAG | 1 cut(s) | 204 |
| DpnI | GATC | 4 cut(s) | 221, 253, 259, 522 |
| DpnII | GATC | 4 cut(s) | 219, 251, 257, 520 |
| EaeI | YGGCCR | 2 cut(s) | 489, 510 |
| Eam1104I | CTCTTC | 1 cut(s) | 466 |
| EarI | CTCTTC | 1 cut(s) | 466 |
| Eco130I | CCWWGG | 2 cut(s) | 407, 486 |
| Eco24I | GRGCYC | 2 cut(s) | 67, 622 |
| Eco47III | AGCGCT | 1 cut(s) | 584 |
| EcoO109I | RGGNCCY | 3 cut(s) | 63, 64, 464 |
| EcoRII | CCWGG | 1 cut(s) | 108 |
| EcoT14I | CCWWGG | 2 cut(s) | 407, 486 |
| EcoT38I | GRGCYC | 2 cut(s) | 67, 622 |
| ErhI | CCWWGG | 2 cut(s) | 407, 486 |
| FaeI | CATG | 6 cut(s) | 11, 242, 399, 411, 442, 490 |
| FatI | CATG | 6 cut(s) | 7, 238, 395, 407, 438, 486 |
| FauI | CCCGC | 1 cut(s) | 609 |
| Fnu4HI | GCNGC | 3 cut(s) | 339, 477, 480 |
| FokI | GGATG | 3 cut(s) | 2, 221, 359 |
| FriOI | GRGCYC | 2 cut(s) | 67, 622 |
| Fsp4HI | GCNGC | 3 cut(s) | 339, 477, 480 |
| FspBI | CTAG | 3 cut(s) | 96, 122, 383 |
| GlaI | GCGC | 1 cut(s) | 584 |
| GluI | GCNGC | 3 cut(s) | 339, 477, 480 |
| GsuI | CTGGAG | 1 cut(s) | 480 |
| HaeII | RGCGCY | 1 cut(s) | 586 |
| HaeIII | GGCC | 4 cut(s) | 65, 465, 491, 512 |
| HhaI | GCGC | 1 cut(s) | 585 |
| Hin1II | CATG | 6 cut(s) | 11, 242, 399, 411, 442, 490 |
| Hin6I | GCGC | 1 cut(s) | 583 |
| HinP1I | GCGC | 1 cut(s) | 583 |
| HinfI | GANTC | 3 cut(s) | 53, 200, 301 |
| HphI | GGTGA | 2 cut(s) | 142, 434 |
| Hpy166II | GTNNAC | 3 cut(s) | 46, 92, 573 |
| Hpy188I | TCNGA | 1 cut(s) | 525 |
| Hpy188III | TCNNGA | 5 cut(s) | 25, 206, 223, 255, 459 |
| Hpy8I | GTNNAC | 3 cut(s) | 46, 92, 573 |
| HpyCH4III | ACNGT | 2 cut(s) | 518, 635 |
| HpyCH4IV | ACGT | 2 cut(s) | 362, 557 |
| HpyCH4V | TGCA | 4 cut(s) | 33, 146, 338, 399 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 392, 488 |
| HpyF3I | CTNAG | 1 cut(s) | 204 |
| HpySE526I | ACGT | 2 cut(s) | 362, 557 |
| Hsp92II | CATG | 6 cut(s) | 11, 242, 399, 411, 442, 490 |
| HspAI | GCGC | 1 cut(s) | 583 |
| Kzo9I | GATC | 4 cut(s) | 219, 251, 257, 520 |
| LguI | GCTCTTC | 1 cut(s) | 466 |
| LmnI | GCTCC | 1 cut(s) | 561 |
| Lsp1109I | GCAGC | 3 cut(s) | 350, 488, 491 |
| LweI | GCATC | 1 cut(s) | 133 |
| MaeI | CTAG | 3 cut(s) | 96, 122, 383 |
| MaeII | ACGT | 2 cut(s) | 362, 557 |
| MaeIII | GTNAC | 1 cut(s) | 54 |
| MalI | GATC | 4 cut(s) | 221, 253, 259, 522 |
| MboI | GATC | 4 cut(s) | 219, 251, 257, 520 |
| MboII | GAAGA | 3 cut(s) | 97, 483, 513 |
| MhlI | GDGCHC | 2 cut(s) | 67, 622 |
| MlsI | TGGCCA | 2 cut(s) | 491, 512 |
| MluCI | AATT | 1 cut(s) | 39 |
| MluNI | TGGCCA | 2 cut(s) | 491, 512 |
| MlyI | GAGTC | 2 cut(s) | 62, 295 |
| MnlI | CCTC | 3 cut(s) | 77, 289, 455 |
| Mox20I | TGGCCA | 2 cut(s) | 491, 512 |
| MscI | TGGCCA | 2 cut(s) | 491, 512 |
| MseI | TTAA | 1 cut(s) | 649 |
| MslI | CAYNNNNRTG | 2 cut(s) | 141, 273 |
| Msp20I | TGGCCA | 2 cut(s) | 491, 512 |
| MspR9I | CCNGG | 1 cut(s) | 110 |
| Mva1269I | GAATGC | 1 cut(s) | 232 |
| MvaI | CCWGG | 1 cut(s) | 110 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 392, 488 |
| NcoI | CCATGG | 2 cut(s) | 407, 486 |
| NdeII | GATC | 4 cut(s) | 219, 251, 257, 520 |
| NlaIII | CATG | 6 cut(s) | 11, 242, 399, 411, 442, 490 |
| NlaIV | GGNNCC | 2 cut(s) | 65, 466 |
| NmuCI | GTSAC | 1 cut(s) | 54 |
| NspI | RCATGY | 1 cut(s) | 399 |
| NspV | TTCGAA | 1 cut(s) | 499 |
| PaeI | GCATGC | 1 cut(s) | 399 |
| PciSI | GCTCTTC | 1 cut(s) | 466 |
| PctI | GAATGC | 1 cut(s) | 232 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| PkrI | GCNGC | 3 cut(s) | 340, 478, 481 |
| PleI | GAGTC | 2 cut(s) | 61, 295 |
| PpsI | GAGTC | 2 cut(s) | 61, 295 |
| Ppu21I | YACGTR | 1 cut(s) | 558 |
| Psp6I | CCWGG | 1 cut(s) | 108 |
| PspGI | CCWGG | 1 cut(s) | 108 |
| PspN4I | GGNNCC | 2 cut(s) | 65, 466 |
| PspOMI | GGGCCC | 1 cut(s) | 63 |
| PspPI | GGNCC | 3 cut(s) | 63, 64, 464 |
| PstI | CTGCAG | 1 cut(s) | 35 |
| RsaI | GTAC | 1 cut(s) | 572 |
| RsaNI | GTAC | 1 cut(s) | 571 |
| RseI | CAYNNNNRTG | 2 cut(s) | 141, 273 |
| SapI | GCTCTTC | 1 cut(s) | 466 |
| SaqAI | TTAA | 1 cut(s) | 649 |
| SatI | GCNGC | 3 cut(s) | 339, 477, 480 |
| Sau3AI | GATC | 4 cut(s) | 219, 251, 257, 520 |
| Sau96I | GGNCC | 3 cut(s) | 63, 64, 464 |
| SchI | GAGTC | 2 cut(s) | 62, 295 |
| ScrFI | CCNGG | 1 cut(s) | 110 |
| SduI | GDGCHC | 2 cut(s) | 67, 622 |
| SetI | ASST | 4 cut(s) | 97, 365, 404, 560 |
| SfaNI | GCATC | 1 cut(s) | 133 |
| SfcI | CTRYAG | 1 cut(s) | 31 |
| SfuI | TTCGAA | 1 cut(s) | 499 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 141, 273 |
| SphI | GCATGC | 1 cut(s) | 399 |
| Sse9I | AATT | 1 cut(s) | 39 |
| SsiI | CCGC | 2 cut(s) | 188, 616 |
| SspMI | CTAG | 3 cut(s) | 96, 122, 383 |
| StyD4I | CCNGG | 1 cut(s) | 108 |
| StyI | CCWWGG | 2 cut(s) | 407, 486 |
| TaaI | ACNGT | 2 cut(s) | 518, 635 |
| TaiI | ACGT | 2 cut(s) | 365, 560 |
| TaqI | TCGA | 4 cut(s) | 256, 390, 443, 499 |
| TasI | AATT | 1 cut(s) | 39 |
| TatI | WGTACW | 1 cut(s) | 570 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| Tru1I | TTAA | 1 cut(s) | 649 |
| Tru9I | TTAA | 1 cut(s) | 649 |
| TseFI | GTSAC | 1 cut(s) | 54 |
| TseI | GCWGC | 3 cut(s) | 338, 476, 479 |
| Tsp45I | GTSAC | 1 cut(s) | 54 |
| TspDTI | ATGAA | 2 cut(s) | 147, 447 |
| TspGWI | ACGGA | 1 cut(s) | 308 |
| XceI | RCATGY | 1 cut(s) | 399 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 583 |
| XspI | CTAG | 3 cut(s) | 96, 122, 383 |