ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 488 |
| AclWI | GGATC | 2 cut(s) | 379, 392 |
| AcoI | YGGCCR | 1 cut(s) | 56 |
| AcsI | RAATTY | 3 cut(s) | 18, 209, 368 |
| AfaI | GTAC | 2 cut(s) | 90, 292 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 36, 147, 394, 424 |
| AgsI | TTSAA | 2 cut(s) | 13, 83 |
| AjnI | CCWGG | 1 cut(s) | 140 |
| AleI | CACNNNNGTG | 1 cut(s) | 220 |
| AluBI | AGCT | 1 cut(s) | 77 |
| AluI | AGCT | 1 cut(s) | 77 |
| Alw21I | GWGCWC | 1 cut(s) | 450 |
| Alw26I | GTCTC | 2 cut(s) | 139, 338 |
| AlwI | GGATC | 2 cut(s) | 379, 392 |
| AoxI | GGCC | 1 cut(s) | 56 |
| ApeKI | GCWGC | 2 cut(s) | 62, 405 |
| ApoI | RAATTY | 3 cut(s) | 18, 209, 368 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 78 |
| AsuHPI | GGTGA | 2 cut(s) | 17, 293 |
| BamHI | GGATCC | 1 cut(s) | 384 |
| Bbv12I | GWGCWC | 1 cut(s) | 450 |
| BbvI | GCAGC | 2 cut(s) | 74, 392 |
| BceAI | ACGGC | 2 cut(s) | 422, 466 |
| BciT130I | CCWGG | 1 cut(s) | 142 |
| BclI | TGATCA | 1 cut(s) | 265 |
| BcoDI | GTCTC | 2 cut(s) | 139, 338 |
| BfaI | CTAG | 1 cut(s) | 496 |
| BisI | GCNGC | 2 cut(s) | 63, 406 |
| BlsI | GCNGC | 2 cut(s) | 64, 407 |
| BmcAI | AGTACT | 1 cut(s) | 90 |
| Bme1390I | CCNGG | 1 cut(s) | 142 |
| BmiI | GGNNCC | 1 cut(s) | 386 |
| BmrFI | CCNGG | 1 cut(s) | 142 |
| BpmI | CTGGAG | 1 cut(s) | 163 |
| BsaAI | YACGTR | 1 cut(s) | 351 |
| BsaWI | WCCGGW | 1 cut(s) | 424 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 136, 166 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 36, 147, 394, 424 |
| Bse118I | RCCGGY | 1 cut(s) | 58 |
| BseBI | CCWGG | 1 cut(s) | 142 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 36, 147, 394, 424 |
| BseRI | GAGGAG | 3 cut(s) | 207, 482, 485 |
| BseX3I | CGGCCG | 1 cut(s) | 56 |
| BseXI | GCAGC | 2 cut(s) | 74, 392 |
| Bsh1285I | CGRYCG | 1 cut(s) | 59 |
| BshFI | GGCC | 1 cut(s) | 58 |
| BsiEI | CGRYCG | 1 cut(s) | 59 |
| BsiHKAI | GWGCWC | 1 cut(s) | 450 |
| BsiSI | CCGG | 2 cut(s) | 59, 425 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 36, 147, 394, 424 |
| BsmAI | GTCTC | 2 cut(s) | 139, 338 |
| BsmBI | CGTCTC | 1 cut(s) | 139 |
| BsnI | GGCC | 1 cut(s) | 58 |
| Bsp1286I | GDGCHC | 1 cut(s) | 450 |
| Bsp143I | GATC | 4 cut(s) | 265, 323, 384, 412 |
| BspACI | CCGC | 1 cut(s) | 488 |
| BspANI | GGCC | 1 cut(s) | 58 |
| BspLI | GGNNCC | 1 cut(s) | 386 |
| BspPI | GGATC | 2 cut(s) | 379, 392 |
| BsrFI | RCCGGY | 1 cut(s) | 58 |
| BssAI | RCCGGY | 1 cut(s) | 58 |
| BssMI | GATC | 4 cut(s) | 265, 323, 384, 412 |
| Bst2UI | CCWGG | 1 cut(s) | 142 |
| Bst4CI | ACNGT | 2 cut(s) | 101, 259 |
| BstBAI | YACGTR | 1 cut(s) | 351 |
| BstC8I | GCNNGC | 1 cut(s) | 60 |
| BstKTI | GATC | 4 cut(s) | 268, 326, 387, 415 |
| BstMAI | GTCTC | 2 cut(s) | 139, 338 |
| BstMBI | GATC | 4 cut(s) | 265, 323, 384, 412 |
| BstMCI | CGRYCG | 1 cut(s) | 59 |
| BstNI | CCWGG | 1 cut(s) | 142 |
| BstSCI | CCNGG | 1 cut(s) | 140 |
| BstV1I | GCAGC | 2 cut(s) | 74, 392 |
| BstX2I | RGATCY | 1 cut(s) | 384 |
| BstYI | RGATCY | 1 cut(s) | 384 |
| BstZI | CGGCCG | 1 cut(s) | 56 |
| BsuRI | GGCC | 1 cut(s) | 58 |
| Cac8I | GCNNGC | 1 cut(s) | 60 |
| Cfr10I | RCCGGY | 1 cut(s) | 58 |
| CseI | GACGC | 1 cut(s) | 170 |
| Csp6I | GTAC | 2 cut(s) | 89, 291 |
| CviAII | CATG | 1 cut(s) | 245 |
| CviJI | RGCY | 6 cut(s) | 58, 77, 129, 405, 431, 481 |
| CviKI_1 | RGCY | 6 cut(s) | 58, 77, 129, 405, 431, 481 |
| CviQI | GTAC | 2 cut(s) | 89, 291 |
| DpnI | GATC | 4 cut(s) | 267, 325, 386, 414 |
| DpnII | GATC | 4 cut(s) | 265, 323, 384, 412 |
| EaeI | YGGCCR | 1 cut(s) | 56 |
| EagI | CGGCCG | 1 cut(s) | 56 |
| EclXI | CGGCCG | 1 cut(s) | 56 |
| Eco52I | CGGCCG | 1 cut(s) | 56 |
| EcoRII | CCWGG | 1 cut(s) | 140 |
| Esp3I | CGTCTC | 1 cut(s) | 139 |
| FaeI | CATG | 1 cut(s) | 248 |
| FaiI | YATR | 4 cut(s) | 138, 239, 246, 400 |
| FatI | CATG | 1 cut(s) | 244 |
| FbaI | TGATCA | 1 cut(s) | 265 |
| Fnu4HI | GCNGC | 2 cut(s) | 63, 406 |
| Fsp4HI | GCNGC | 2 cut(s) | 63, 406 |
| FspBI | CTAG | 1 cut(s) | 496 |
| GluI | GCNGC | 2 cut(s) | 63, 406 |
| GsuI | CTGGAG | 1 cut(s) | 163 |
| HaeIII | GGCC | 1 cut(s) | 58 |
| HapII | CCGG | 2 cut(s) | 59, 425 |
| HgaI | GACGC | 1 cut(s) | 170 |
| Hin1II | CATG | 1 cut(s) | 248 |
| HindIII | AAGCTT | 1 cut(s) | 75 |
| HpaII | CCGG | 2 cut(s) | 59, 425 |
| HphI | GGTGA | 2 cut(s) | 17, 293 |
| Hpy166II | GTNNAC | 2 cut(s) | 118, 293 |
| Hpy188I | TCNGA | 3 cut(s) | 97, 265, 412 |
| Hpy188III | TCNNGA | 1 cut(s) | 185 |
| Hpy8I | GTNNAC | 2 cut(s) | 118, 293 |
| HpyAV | CCTTC | 1 cut(s) | 152 |
| HpyCH4III | ACNGT | 2 cut(s) | 101, 259 |
| HpyCH4IV | ACGT | 1 cut(s) | 350 |
| HpyCH4V | TGCA | 1 cut(s) | 215 |
| HpySE526I | ACGT | 1 cut(s) | 350 |
| Hsp92II | CATG | 1 cut(s) | 248 |
| KroI | GCCGGC | 1 cut(s) | 58 |
| KroNI | GCCGGC | 1 cut(s) | 60 |
| Ksp22I | TGATCA | 1 cut(s) | 265 |
| Kzo9I | GATC | 4 cut(s) | 265, 323, 384, 412 |
| LmnI | GCTCC | 2 cut(s) | 178, 413 |
| LpnPI | CCDG | 8 cut(s) | 27, 72, 110, 127, 154, 170, 318, 438 |
| Lsp1109I | GCAGC | 2 cut(s) | 74, 392 |
| MaeI | CTAG | 1 cut(s) | 496 |
| MaeII | ACGT | 1 cut(s) | 350 |
| MalI | GATC | 4 cut(s) | 267, 325, 386, 414 |
| MboI | GATC | 4 cut(s) | 265, 323, 384, 412 |
| MboII | GAAGA | 2 cut(s) | 374, 467 |
| MfeI | CAATTG | 1 cut(s) | 218 |
| MflI | RGATCY | 1 cut(s) | 384 |
| MhlI | GDGCHC | 1 cut(s) | 450 |
| MluCI | AATT | 4 cut(s) | 18, 209, 218, 368 |
| MmeI | TCCRAC | 1 cut(s) | 264 |
| MnlI | CCTC | 6 cut(s) | 185, 324, 370, 460, 463, 466 |
| MroNI | GCCGGC | 1 cut(s) | 58 |
| MroXI | GAANNNNTTC | 1 cut(s) | 78 |
| MslI | CAYNNNNRTG | 1 cut(s) | 220 |
| MspI | CCGG | 2 cut(s) | 59, 425 |
| MspR9I | CCNGG | 1 cut(s) | 142 |
| MunI | CAATTG | 1 cut(s) | 218 |
| MvaI | CCWGG | 1 cut(s) | 142 |
| NaeI | GCCGGC | 1 cut(s) | 60 |
| NdeII | GATC | 4 cut(s) | 265, 323, 384, 412 |
| NgoMIV | GCCGGC | 1 cut(s) | 58 |
| NlaIII | CATG | 1 cut(s) | 248 |
| NlaIV | GGNNCC | 1 cut(s) | 386 |
| OliI | CACNNNNGTG | 1 cut(s) | 220 |
| PdiI | GCCGGC | 1 cut(s) | 60 |
| PdmI | GAANNNNTTC | 1 cut(s) | 78 |
| PkrI | GCNGC | 2 cut(s) | 64, 407 |
| Ppu21I | YACGTR | 1 cut(s) | 351 |
| Psp6I | CCWGG | 1 cut(s) | 140 |
| PspGI | CCWGG | 1 cut(s) | 140 |
| PspN4I | GGNNCC | 1 cut(s) | 386 |
| PsuI | RGATCY | 1 cut(s) | 384 |
| RsaI | GTAC | 2 cut(s) | 90, 292 |
| RsaNI | GTAC | 2 cut(s) | 89, 291 |
| RseI | CAYNNNNRTG | 1 cut(s) | 220 |
| SatI | GCNGC | 2 cut(s) | 63, 406 |
| Sau3AI | GATC | 4 cut(s) | 265, 323, 384, 412 |
| ScaI | AGTACT | 1 cut(s) | 90 |
| ScrFI | CCNGG | 1 cut(s) | 142 |
| SduI | GDGCHC | 1 cut(s) | 450 |
| SetI | ASST | 5 cut(s) | 79, 143, 335, 353, 381 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 220 |
| Sse9I | AATT | 4 cut(s) | 18, 209, 218, 368 |
| SsiI | CCGC | 1 cut(s) | 488 |
| SspI | AATATT | 1 cut(s) | 166 |
| SspMI | CTAG | 1 cut(s) | 496 |
| StyD4I | CCNGG | 1 cut(s) | 140 |
| TaaI | ACNGT | 2 cut(s) | 101, 259 |
| TaiI | ACGT | 1 cut(s) | 353 |
| TasI | AATT | 4 cut(s) | 18, 209, 218, 368 |
| TatI | WGTACW | 2 cut(s) | 88, 290 |
| TseI | GCWGC | 2 cut(s) | 62, 405 |
| TspDTI | ATGAA | 4 cut(s) | 30, 48, 215, 326 |
| TspGWI | ACGGA | 1 cut(s) | 377 |
| XapI | RAATTY | 3 cut(s) | 18, 209, 368 |
| XmnI | GAANNNNTTC | 1 cut(s) | 78 |
| XspI | CTAG | 1 cut(s) | 496 |
| ZrmI | AGTACT | 1 cut(s) | 90 |