ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 197 | 1.9e-13 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 462 |
| AciI | CCGC | 3 cut(s) | 361, 475, 485 |
| AclWI | GGATC | 6 cut(s) | 33, 672, 761, 1103, 1171, 1184 |
| AcsI | RAATTY | 3 cut(s) | 146, 154, 217 |
| AfaI | GTAC | 3 cut(s) | 166, 1189, 1309 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 72, 524, 748 |
| AgsI | TTSAA | 3 cut(s) | 154, 566, 1329 |
| AjnI | CCWGG | 2 cut(s) | 347, 770 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 911, 943 |
| AluBI | AGCT | 3 cut(s) | 35, 355, 1131 |
| AluI | AGCT | 3 cut(s) | 35, 355, 1131 |
| Alw21I | GWGCWC | 1 cut(s) | 1133 |
| Alw26I | GTCTC | 5 cut(s) | 101, 983, 1027, 1062, 1106 |
| AlwI | GGATC | 6 cut(s) | 33, 672, 761, 1103, 1171, 1184 |
| Ama87I | CYCGRG | 1 cut(s) | 42 |
| AoxI | GGCC | 2 cut(s) | 936, 1222 |
| ApeKI | GCWGC | 2 cut(s) | 472, 803 |
| ApoI | RAATTY | 3 cut(s) | 146, 154, 217 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspS9I | GGNCC | 1 cut(s) | 936 |
| AsuC2I | CCSGG | 3 cut(s) | 26, 43, 44 |
| AsuHPI | GGTGA | 2 cut(s) | 721, 928 |
| AvaI | CYCGRG | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 1 cut(s) | 49 |
| BamHI | GGATCC | 1 cut(s) | 1176 |
| BanII | GRGCYC | 3 cut(s) | 58, 79, 1133 |
| Bbv12I | GWGCWC | 1 cut(s) | 1133 |
| BbvI | GCAGC | 2 cut(s) | 459, 790 |
| BccI | CCATC | 4 cut(s) | 97, 260, 1167, 1214 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 254, 278, 288, 312 |
| BciT130I | CCWGG | 2 cut(s) | 349, 772 |
| BciVI | GTATCC | 1 cut(s) | 540 |
| BcnI | CCSGG | 3 cut(s) | 26, 43, 44 |
| BcoDI | GTCTC | 5 cut(s) | 101, 983, 1027, 1062, 1106 |
| BfaI | CTAG | 1 cut(s) | 32 |
| BfmI | CTRYAG | 1 cut(s) | 375 |
| BfuI | GTATCC | 1 cut(s) | 540 |
| BisI | GCNGC | 2 cut(s) | 473, 804 |
| BlsI | GCNGC | 2 cut(s) | 474, 805 |
| BmcAI | AGTACT | 1 cut(s) | 1309 |
| Bme1390I | CCNGG | 5 cut(s) | 26, 43, 44, 349, 772 |
| BmeT110I | CYCGRG | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 1 cut(s) | 936 |
| BmiI | GGNNCC | 4 cut(s) | 64, 740, 937, 1178 |
| BmrFI | CCNGG | 5 cut(s) | 26, 43, 44, 349, 772 |
| BmrI | ACTGGG | 2 cut(s) | 450, 808 |
| BmsI | GCATC | 2 cut(s) | 847, 949 |
| BmuI | ACTGGG | 2 cut(s) | 450, 808 |
| BpmI | CTGGAG | 1 cut(s) | 210 |
| BpuEI | CTTGAG | 1 cut(s) | 765 |
| BpuMI | CCSGG | 3 cut(s) | 26, 43, 44 |
| Bsa29I | ATCGAT | 2 cut(s) | 264, 1201 |
| BsaAI | YACGTR | 1 cut(s) | 1187 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1166 |
| BsaJI | CCNNGG | 5 cut(s) | 25, 42, 252, 348, 770 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 261, 291, 544, 574, 980, 1010 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 72, 524, 748 |
| Bse1I | ACTGG | 5 cut(s) | 193, 310, 445, 803, 904 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1166 |
| BseBI | CCWGG | 2 cut(s) | 349, 772 |
| BseCI | ATCGAT | 2 cut(s) | 264, 1201 |
| BseDI | CCNNGG | 5 cut(s) | 25, 42, 252, 348, 770 |
| BseGI | GGATG | 2 cut(s) | 248, 1178 |
| BseJI | GATNNNNATC | 1 cut(s) | 1166 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 72, 524, 748 |
| BseMII | CTCAG | 1 cut(s) | 520 |
| BseNI | ACTGG | 5 cut(s) | 193, 310, 445, 803, 904 |
| BseRI | GAGGAG | 2 cut(s) | 361, 1034 |
| BseSI | GKGCMC | 1 cut(s) | 49 |
| BseXI | GCAGC | 2 cut(s) | 459, 790 |
| BseYI | CCCAGC | 1 cut(s) | 1122 |
| BsgI | GTGCAG | 1 cut(s) | 813 |
| BshFI | GGCC | 2 cut(s) | 938, 1224 |
| BshVI | ATCGAT | 2 cut(s) | 264, 1201 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1133 |
| BsiHKCI | CYCGRG | 1 cut(s) | 42 |
| BsiSI | CCGG | 2 cut(s) | 25, 43 |
| BslFI | GGGAC | 1 cut(s) | 1105 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 72, 524, 748 |
| BsmAI | GTCTC | 5 cut(s) | 101, 983, 1027, 1062, 1106 |
| BsmFI | GGGAC | 1 cut(s) | 1105 |
| BsmI | GAATGC | 1 cut(s) | 286 |
| BsnI | GGCC | 2 cut(s) | 938, 1224 |
| BsoBI | CYCGRG | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 4 cut(s) | 49, 58, 79, 1133 |
| Bsp1407I | TGTACA | 1 cut(s) | 164 |
| Bsp143I | GATC | 9 cut(s) | 38, 502, 586, 664, 766, 1040, 1095, 1176, 1202 |
| BspACI | CCGC | 3 cut(s) | 361, 475, 485 |
| BspANI | GGCC | 2 cut(s) | 938, 1224 |
| BspCNI | CTCAG | 1 cut(s) | 519 |
| BspDI | ATCGAT | 2 cut(s) | 264, 1201 |
| BspLI | GGNNCC | 4 cut(s) | 64, 740, 937, 1178 |
| BspPI | GGATC | 6 cut(s) | 33, 672, 761, 1103, 1171, 1184 |
| BsrGI | TGTACA | 1 cut(s) | 164 |
| BsrI | ACTGG | 5 cut(s) | 193, 310, 445, 803, 904 |
| BssECI | CCNNGG | 5 cut(s) | 25, 42, 252, 348, 770 |
| BssMI | GATC | 9 cut(s) | 38, 502, 586, 664, 766, 1040, 1095, 1176, 1202 |
| Bst2UI | CCWGG | 2 cut(s) | 349, 772 |
| Bst4CI | ACNGT | 6 cut(s) | 169, 379, 607, 705, 996, 1312 |
| Bst6I | CTCTTC | 1 cut(s) | 1236 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 907 |
| BstAUI | TGTACA | 1 cut(s) | 164 |
| BstBAI | YACGTR | 1 cut(s) | 1187 |
| BstDEI | CTNAG | 2 cut(s) | 71, 506 |
| BstDSI | CCRYGG | 1 cut(s) | 252 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 70 |
| BstF5I | GGATG | 2 cut(s) | 248, 1178 |
| BstKTI | GATC | 9 cut(s) | 41, 505, 589, 667, 769, 1043, 1098, 1179, 1205 |
| BstMAI | GTCTC | 5 cut(s) | 101, 983, 1027, 1062, 1106 |
| BstMBI | GATC | 9 cut(s) | 38, 502, 586, 664, 766, 1040, 1095, 1176, 1202 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 53, 281, 306, 812, 907, 968 |
| BstNI | CCWGG | 2 cut(s) | 349, 772 |
| BstSCI | CCNGG | 5 cut(s) | 24, 41, 42, 347, 770 |
| BstSFI | CTRYAG | 1 cut(s) | 375 |
| BstSLI | GKGCMC | 1 cut(s) | 49 |
| BstV1I | GCAGC | 2 cut(s) | 459, 790 |
| BstX2I | RGATCY | 1 cut(s) | 1176 |
| BstYI | RGATCY | 1 cut(s) | 1176 |
| Bsu15I | ATCGAT | 2 cut(s) | 264, 1201 |
| BsuI | GTATCC | 1 cut(s) | 540 |
| BsuRI | GGCC | 2 cut(s) | 938, 1224 |
| BsuTUI | ATCGAT | 2 cut(s) | 264, 1201 |
| BtgI | CCRYGG | 1 cut(s) | 252 |
| BtsCI | GGATG | 2 cut(s) | 248, 1178 |
| BtsI | GCAGTG | 1 cut(s) | 432 |
| BtsIMutI | CAGTG | 3 cut(s) | 186, 432, 693 |
| Cfr13I | GGNCC | 1 cut(s) | 936 |
| Cfr9I | CCCGGG | 1 cut(s) | 42 |
| ClaI | ATCGAT | 2 cut(s) | 264, 1201 |
| Csp6I | GTAC | 3 cut(s) | 165, 1188, 1308 |
| CviAII | CATG | 2 cut(s) | 1181, 1238 |
| CviQI | GTAC | 3 cut(s) | 165, 1188, 1308 |
| DdeI | CTNAG | 2 cut(s) | 71, 506 |
| DpnI | GATC | 9 cut(s) | 40, 504, 588, 666, 768, 1042, 1097, 1178, 1204 |
| DpnII | GATC | 9 cut(s) | 38, 502, 586, 664, 766, 1040, 1095, 1176, 1202 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 462 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 462 |
| Eam1104I | CTCTTC | 1 cut(s) | 1236 |
| EarI | CTCTTC | 1 cut(s) | 1236 |
| EciI | GGCGGA | 1 cut(s) | 350 |
| Ecl136II | GAGCTC | 1 cut(s) | 1131 |
| Eco24I | GRGCYC | 3 cut(s) | 58, 79, 1133 |
| Eco32I | GATATC | 1 cut(s) | 714 |
| Eco53kI | GAGCTC | 1 cut(s) | 1131 |
| Eco88I | CYCGRG | 1 cut(s) | 42 |
| EcoICRI | GAGCTC | 1 cut(s) | 1131 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 70 |
| EcoO109I | RGGNCCY | 1 cut(s) | 936 |
| EcoRI | GAATTC | 1 cut(s) | 217 |
| EcoRII | CCWGG | 2 cut(s) | 347, 770 |
| EcoRV | GATATC | 1 cut(s) | 714 |
| EcoT38I | GRGCYC | 3 cut(s) | 58, 79, 1133 |
| FaeI | CATG | 2 cut(s) | 1184, 1241 |
| FaqI | GGGAC | 1 cut(s) | 1105 |
| FatI | CATG | 2 cut(s) | 1180, 1237 |
| Fnu4HI | GCNGC | 2 cut(s) | 473, 804 |
| FokI | GGATG | 2 cut(s) | 235, 1185 |
| FriOI | GRGCYC | 3 cut(s) | 58, 79, 1133 |
| Fsp4HI | GCNGC | 2 cut(s) | 473, 804 |
| FspBI | CTAG | 1 cut(s) | 32 |
| GluI | GCNGC | 2 cut(s) | 473, 804 |
| GsaI | CCCAGC | 1 cut(s) | 1126 |
| GsuI | CTGGAG | 1 cut(s) | 210 |
| HaeIII | GGCC | 2 cut(s) | 938, 1224 |
| HapII | CCGG | 2 cut(s) | 25, 43 |
| Hin1II | CATG | 2 cut(s) | 1184, 1241 |
| HinfI | GANTC | 4 cut(s) | 109, 366, 947, 1258 |
| HpaII | CCGG | 2 cut(s) | 25, 43 |
| HphI | GGTGA | 2 cut(s) | 721, 928 |
| Hpy166II | GTNNAC | 2 cut(s) | 684, 1235 |
| Hpy188I | TCNGA | 9 cut(s) | 102, 223, 385, 664, 766, 946, 956, 1095, 1172 |
| Hpy188III | TCNNGA | 2 cut(s) | 717, 1044 |
| Hpy8I | GTNNAC | 2 cut(s) | 684, 1235 |
| Hpy99I | CGWCG | 2 cut(s) | 54, 331 |
| HpyAV | CCTTC | 2 cut(s) | 333, 729 |
| HpyCH4III | ACNGT | 6 cut(s) | 169, 379, 607, 705, 996, 1312 |
| HpyCH4IV | ACGT | 2 cut(s) | 922, 1186 |
| HpyCH4V | TGCA | 7 cut(s) | 284, 425, 599, 639, 830, 1009, 1184 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 53, 281, 306, 812, 907, 968 |
| HpyF3I | CTNAG | 2 cut(s) | 71, 506 |
| HpySE526I | ACGT | 2 cut(s) | 922, 1186 |
| Hsp92II | CATG | 2 cut(s) | 1184, 1241 |
| Kzo9I | GATC | 9 cut(s) | 38, 502, 586, 664, 766, 1040, 1095, 1176, 1202 |
| LmnI | GCTCC | 2 cut(s) | 352, 1136 |
| Lsp1109I | GCAGC | 2 cut(s) | 459, 790 |
| LweI | GCATC | 2 cut(s) | 847, 949 |
| MaeI | CTAG | 1 cut(s) | 32 |
| MaeII | ACGT | 2 cut(s) | 922, 1186 |
| MaeIII | GTNAC | 1 cut(s) | 182 |
| MalI | GATC | 9 cut(s) | 40, 504, 588, 666, 768, 1042, 1097, 1178, 1204 |
| MboI | GATC | 9 cut(s) | 38, 502, 586, 664, 766, 1040, 1095, 1176, 1202 |
| MboII | GAAGA | 9 cut(s) | 16, 131, 134, 237, 506, 738, 837, 1253, 1259 |
| MfeI | CAATTG | 1 cut(s) | 113 |
| MflI | RGATCY | 1 cut(s) | 1176 |
| MhlI | GDGCHC | 4 cut(s) | 49, 58, 79, 1133 |
| MluCI | AATT | 9 cut(s) | 113, 146, 154, 217, 566, 964, 983, 1110, 1330 |
| MlyI | GAGTC | 2 cut(s) | 103, 956 |
| MmeI | TCCRAC | 2 cut(s) | 471, 909 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 5 cut(s) | 203, 234, 411, 446, 611 |
| MslI | CAYNNNNRTG | 1 cut(s) | 264 |
| MspI | CCGG | 2 cut(s) | 25, 43 |
| MspR9I | CCNGG | 5 cut(s) | 26, 43, 44, 349, 772 |
| MunI | CAATTG | 1 cut(s) | 113 |
| Mva1269I | GAATGC | 1 cut(s) | 286 |
| MvaI | CCWGG | 2 cut(s) | 349, 772 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 53, 281, 306, 812, 907, 968 |
| NciI | CCSGG | 3 cut(s) | 26, 43, 44 |
| NdeII | GATC | 9 cut(s) | 38, 502, 586, 664, 766, 1040, 1095, 1176, 1202 |
| NlaIII | CATG | 2 cut(s) | 1184, 1241 |
| NlaIV | GGNNCC | 4 cut(s) | 64, 740, 937, 1178 |
| NmuCI | GTSAC | 1 cut(s) | 182 |
| PctI | GAATGC | 1 cut(s) | 286 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 2 cut(s) | 366, 1258 |
| PkrI | GCNGC | 2 cut(s) | 474, 805 |
| PleI | GAGTC | 2 cut(s) | 103, 955 |
| PpsI | GAGTC | 2 cut(s) | 103, 955 |
| Ppu21I | YACGTR | 1 cut(s) | 1187 |
| Psp124BI | GAGCTC | 1 cut(s) | 1133 |
| Psp6I | CCWGG | 2 cut(s) | 347, 770 |
| PspFI | CCCAGC | 1 cut(s) | 1122 |
| PspGI | CCWGG | 2 cut(s) | 347, 770 |
| PspN4I | GGNNCC | 4 cut(s) | 64, 740, 937, 1178 |
| PspPI | GGNCC | 1 cut(s) | 936 |
| PsuI | RGATCY | 1 cut(s) | 1176 |
| RsaI | GTAC | 3 cut(s) | 166, 1189, 1309 |
| RsaNI | GTAC | 3 cut(s) | 165, 1188, 1308 |
| RseI | CAYNNNNRTG | 1 cut(s) | 264 |
| SacI | GAGCTC | 1 cut(s) | 1133 |
| SaqAI | TTAA | 5 cut(s) | 203, 234, 411, 446, 611 |
| SatI | GCNGC | 2 cut(s) | 473, 804 |
| Sau3AI | GATC | 9 cut(s) | 38, 502, 586, 664, 766, 1040, 1095, 1176, 1202 |
| Sau96I | GGNCC | 1 cut(s) | 936 |
| ScaI | AGTACT | 1 cut(s) | 1309 |
| SchI | GAGTC | 2 cut(s) | 103, 956 |
| ScrFI | CCNGG | 5 cut(s) | 26, 43, 44, 349, 772 |
| SduI | GDGCHC | 4 cut(s) | 49, 58, 79, 1133 |
| SfaNI | GCATC | 2 cut(s) | 847, 949 |
| SfcI | CTRYAG | 1 cut(s) | 375 |
| SmaI | CCCGGG | 1 cut(s) | 44 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 264 |
| SmlI | CTYRAG | 1 cut(s) | 780 |
| SmoI | CTYRAG | 1 cut(s) | 780 |
| Sse9I | AATT | 9 cut(s) | 113, 146, 154, 217, 566, 964, 983, 1110, 1330 |
| SsiI | CCGC | 3 cut(s) | 361, 475, 485 |
| SspI | AATATT | 1 cut(s) | 895 |
| SspMI | CTAG | 1 cut(s) | 32 |
| SstI | GAGCTC | 1 cut(s) | 1133 |
| StyD4I | CCNGG | 5 cut(s) | 24, 41, 42, 347, 770 |
| TaaI | ACNGT | 6 cut(s) | 169, 379, 607, 705, 996, 1312 |
| TaiI | ACGT | 2 cut(s) | 925, 1189 |
| TaqI | TCGA | 5 cut(s) | 37, 264, 326, 670, 1201 |
| TasI | AATT | 9 cut(s) | 113, 146, 154, 217, 566, 964, 983, 1110, 1330 |
| TatI | WGTACW | 2 cut(s) | 164, 1307 |
| TfiI | GAWTC | 2 cut(s) | 366, 1258 |
| Tru1I | TTAA | 5 cut(s) | 203, 234, 411, 446, 611 |
| Tru9I | TTAA | 5 cut(s) | 203, 234, 411, 446, 611 |
| TscAI | CASTG | 3 cut(s) | 193, 432, 700 |
| TseFI | GTSAC | 1 cut(s) | 182 |
| TseI | GCWGC | 2 cut(s) | 472, 803 |
| Tsp45I | GTSAC | 1 cut(s) | 182 |
| TspDTI | ATGAA | 8 cut(s) | 17, 237, 332, 402, 857, 1155, 1254, 1259 |
| TspGWI | ACGGA | 2 cut(s) | 241, 1220 |
| TspMI | CCCGGG | 1 cut(s) | 42 |
| TspRI | CASTG | 3 cut(s) | 193, 432, 700 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 70 |
| XapI | RAATTY | 3 cut(s) | 146, 154, 217 |
| XmaI | CCCGGG | 1 cut(s) | 42 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 1 cut(s) | 32 |
| ZrmI | AGTACT | 1 cut(s) | 1309 |