ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 882 |
| AclWI | GGATC | 4 cut(s) | 235, 550, 806, 819 |
| AcuI | CTGAAG | 1 cut(s) | 243 |
| AfaI | GTAC | 1 cut(s) | 769 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 193, 806, 807 |
| AgsI | TTSAA | 4 cut(s) | 13, 152, 427, 782 |
| AluBI | AGCT | 3 cut(s) | 235, 386, 638 |
| AluI | AGCT | 3 cut(s) | 235, 386, 638 |
| Alw21I | GWGCWC | 1 cut(s) | 237 |
| Alw26I | GTCTC | 2 cut(s) | 574, 609 |
| AlwI | GGATC | 4 cut(s) | 235, 550, 806, 819 |
| Ama87I | CYCGRG | 1 cut(s) | 633 |
| AoxI | GGCC | 3 cut(s) | 37, 470, 591 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 82, 114 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 256 |
| AspA2I | CCTAGG | 1 cut(s) | 467 |
| AspLEI | GCGC | 1 cut(s) | 228 |
| AspS9I | GGNCC | 3 cut(s) | 37, 461, 591 |
| AsuHPI | GGTGA | 2 cut(s) | 634, 700 |
| AvaI | CYCGRG | 1 cut(s) | 633 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| AvrII | CCTAGG | 1 cut(s) | 467 |
| AxyI | CCTNAGG | 1 cut(s) | 189 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BamHI | GGATCC | 1 cut(s) | 811 |
| BanII | GRGCYC | 1 cut(s) | 237 |
| Bbv12I | GWGCWC | 1 cut(s) | 237 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BccI | CCATC | 1 cut(s) | 405 |
| BcoDI | GTCTC | 2 cut(s) | 574, 609 |
| BfaI | CTAG | 2 cut(s) | 96, 468 |
| BfmI | CTRYAG | 3 cut(s) | 300, 342, 474 |
| BglII | AGATCT | 1 cut(s) | 133 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlnI | CCTAGG | 1 cut(s) | 467 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmeT110I | CYCGRG | 1 cut(s) | 633 |
| BmgT120I | GGNCC | 3 cut(s) | 37, 461, 591 |
| BmiI | GGNNCC | 2 cut(s) | 38, 813 |
| BmsI | GCATC | 2 cut(s) | 52, 783 |
| BpmI | CTGGAG | 1 cut(s) | 114 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaAI | YACGTR | 1 cut(s) | 555 |
| BsaI | GGTCTC | 1 cut(s) | 609 |
| BsaJI | CCNNGG | 2 cut(s) | 404, 467 |
| BsaWI | WCCGGW | 1 cut(s) | 375 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 734, 764 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 193, 806, 807 |
| Bse1I | ACTGG | 2 cut(s) | 325, 510 |
| Bse21I | CCTNAGG | 1 cut(s) | 189 |
| Bse3DI | GCAATG | 2 cut(s) | 235, 614 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 404, 467 |
| BseGI | GGATG | 2 cut(s) | 202, 798 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 193, 806, 807 |
| BseMI | GCAATG | 2 cut(s) | 235, 614 |
| BseMII | CTCAG | 2 cut(s) | 404, 667 |
| BseNI | ACTGG | 2 cut(s) | 325, 510 |
| BseRI | GAGGAG | 2 cut(s) | 362, 755 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| BshFI | GGCC | 3 cut(s) | 39, 472, 593 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 237 |
| BsiHKCI | CYCGRG | 1 cut(s) | 633 |
| BsiSI | CCGG | 1 cut(s) | 376 |
| BslFI | GGGAC | 3 cut(s) | 368, 379, 864 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 193, 806, 807 |
| BsmAI | GTCTC | 2 cut(s) | 574, 609 |
| BsmFI | GGGAC | 3 cut(s) | 368, 379, 864 |
| BsnI | GGCC | 3 cut(s) | 39, 472, 593 |
| Bso31I | GGTCTC | 1 cut(s) | 609 |
| BsoBI | CYCGRG | 1 cut(s) | 633 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 237 |
| Bsp143I | GATC | 7 cut(s) | 133, 240, 522, 542, 586, 811, 837 |
| BspANI | GGCC | 3 cut(s) | 39, 472, 593 |
| BspCNI | CTCAG | 2 cut(s) | 403, 666 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 861 |
| BspLI | GGNNCC | 2 cut(s) | 38, 813 |
| BspMAI | CTGCAG | 1 cut(s) | 304 |
| BspPI | GGATC | 4 cut(s) | 235, 550, 806, 819 |
| BspTNI | GGTCTC | 1 cut(s) | 609 |
| BsrDI | GCAATG | 2 cut(s) | 235, 614 |
| BsrI | ACTGG | 2 cut(s) | 325, 510 |
| BssECI | CCNNGG | 2 cut(s) | 404, 467 |
| BssMI | GATC | 7 cut(s) | 133, 240, 522, 542, 586, 811, 837 |
| BssT1I | CCWWGG | 2 cut(s) | 404, 467 |
| Bst4CI | ACNGT | 1 cut(s) | 604 |
| Bst6I | CTCTTC | 2 cut(s) | 224, 262 |
| BstBAI | YACGTR | 1 cut(s) | 555 |
| BstC8I | GCNNGC | 1 cut(s) | 595 |
| BstDEI | CTNAG | 4 cut(s) | 189, 390, 573, 653 |
| BstF5I | GGATG | 2 cut(s) | 202, 798 |
| BstHHI | GCGC | 1 cut(s) | 228 |
| BstKTI | GATC | 7 cut(s) | 136, 243, 525, 545, 589, 814, 840 |
| BstMAI | GTCTC | 2 cut(s) | 574, 609 |
| BstMBI | GATC | 7 cut(s) | 133, 240, 522, 542, 586, 811, 837 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 232, 344 |
| BstSFI | CTRYAG | 3 cut(s) | 300, 342, 474 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| BstX2I | RGATCY | 2 cut(s) | 133, 811 |
| BstYI | RGATCY | 2 cut(s) | 133, 811 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| Bsu36I | CCTNAGG | 1 cut(s) | 189 |
| BsuRI | GGCC | 3 cut(s) | 39, 472, 593 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtsCI | GGATG | 2 cut(s) | 202, 798 |
| BtsI | GCAGTG | 1 cut(s) | 667 |
| BtsIMutI | CAGTG | 4 cut(s) | 318, 503, 609, 667 |
| Cac8I | GCNNGC | 1 cut(s) | 595 |
| CciI | TCATGA | 1 cut(s) | 861 |
| CfoI | GCGC | 1 cut(s) | 228 |
| Cfr13I | GGNCC | 3 cut(s) | 37, 461, 591 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 768 |
| CviAII | CATG | 6 cut(s) | 363, 443, 758, 817, 847, 862 |
| CviQI | GTAC | 1 cut(s) | 768 |
| DdeI | CTNAG | 4 cut(s) | 189, 390, 573, 653 |
| DpnI | GATC | 7 cut(s) | 135, 242, 524, 544, 588, 813, 839 |
| DpnII | GATC | 7 cut(s) | 133, 240, 522, 542, 586, 811, 837 |
| Eam1104I | CTCTTC | 2 cut(s) | 224, 262 |
| EarI | CTCTTC | 2 cut(s) | 224, 262 |
| Ecl136II | GAGCTC | 1 cut(s) | 235 |
| Eco130I | CCWWGG | 2 cut(s) | 404, 467 |
| Eco147I | AGGCCT | 1 cut(s) | 472 |
| Eco24I | GRGCYC | 1 cut(s) | 237 |
| Eco31I | GGTCTC | 1 cut(s) | 609 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco53kI | GAGCTC | 1 cut(s) | 235 |
| Eco57I | CTGAAG | 1 cut(s) | 243 |
| Eco81I | CCTNAGG | 1 cut(s) | 189 |
| Eco88I | CYCGRG | 1 cut(s) | 633 |
| EcoICRI | GAGCTC | 1 cut(s) | 235 |
| EcoO109I | RGGNCCY | 2 cut(s) | 37, 461 |
| EcoT14I | CCWWGG | 2 cut(s) | 404, 467 |
| EcoT38I | GRGCYC | 1 cut(s) | 237 |
| ErhI | CCWWGG | 2 cut(s) | 404, 467 |
| FaeI | CATG | 6 cut(s) | 366, 446, 761, 820, 850, 865 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 51, 83 |
| FaqI | GGGAC | 3 cut(s) | 368, 379, 864 |
| FatI | CATG | 6 cut(s) | 362, 442, 757, 816, 846, 861 |
| FblI | GTMKAC | 1 cut(s) | 882 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| FokI | GGATG | 2 cut(s) | 209, 805 |
| FriOI | GRGCYC | 1 cut(s) | 237 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| FspBI | CTAG | 2 cut(s) | 96, 468 |
| GlaI | GCGC | 1 cut(s) | 227 |
| GluI | GCNGC | 1 cut(s) | 5 |
| GsuI | CTGGAG | 1 cut(s) | 114 |
| HaeIII | GGCC | 3 cut(s) | 39, 472, 593 |
| HapII | CCGG | 1 cut(s) | 376 |
| HhaI | GCGC | 1 cut(s) | 228 |
| Hin1II | CATG | 6 cut(s) | 366, 446, 761, 820, 850, 865 |
| Hin6I | GCGC | 1 cut(s) | 226 |
| HinP1I | GCGC | 1 cut(s) | 226 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HinfI | GANTC | 6 cut(s) | 9, 306, 315, 367, 691, 879 |
| HpaII | CCGG | 1 cut(s) | 376 |
| HphI | GGTGA | 2 cut(s) | 634, 700 |
| Hpy166II | GTNNAC | 2 cut(s) | 141, 883 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 251, 419 |
| Hpy188III | TCNNGA | 6 cut(s) | 131, 238, 456, 633, 695, 862 |
| Hpy8I | GTNNAC | 2 cut(s) | 141, 883 |
| HpyAV | CCTTC | 1 cut(s) | 656 |
| HpyCH4III | ACNGT | 1 cut(s) | 604 |
| HpyCH4IV | ACGT | 2 cut(s) | 547, 554 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 302, 446, 607, 761 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 232, 344 |
| HpyF3I | CTNAG | 4 cut(s) | 189, 390, 573, 653 |
| HpySE526I | ACGT | 2 cut(s) | 547, 554 |
| Hsp92II | CATG | 6 cut(s) | 366, 446, 761, 820, 850, 865 |
| HspAI | GCGC | 1 cut(s) | 226 |
| Kzo9I | GATC | 7 cut(s) | 133, 240, 522, 542, 586, 811, 837 |
| LmnI | GCTCC | 2 cut(s) | 801, 825 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| LweI | GCATC | 2 cut(s) | 52, 783 |
| MaeI | CTAG | 2 cut(s) | 96, 468 |
| MaeII | ACGT | 2 cut(s) | 547, 554 |
| MalI | GATC | 7 cut(s) | 135, 242, 524, 544, 588, 813, 839 |
| MboI | GATC | 7 cut(s) | 133, 240, 522, 542, 586, 811, 837 |
| MboII | GAAGA | 3 cut(s) | 211, 249, 847 |
| MflI | RGATCY | 2 cut(s) | 133, 811 |
| MhlI | GDGCHC | 2 cut(s) | 187, 237 |
| MluCI | AATT | 2 cut(s) | 28, 681 |
| MlyI | GAGTC | 2 cut(s) | 315, 888 |
| MmeI | TCCRAC | 3 cut(s) | 397, 520, 770 |
| MroXI | GAANNNNTTC | 1 cut(s) | 256 |
| MseI | TTAA | 2 cut(s) | 168, 680 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspI | CCGG | 1 cut(s) | 376 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 232, 344 |
| NdeII | GATC | 7 cut(s) | 133, 240, 522, 542, 586, 811, 837 |
| NlaIII | CATG | 6 cut(s) | 366, 446, 761, 820, 850, 865 |
| NlaIV | GGNNCC | 2 cut(s) | 38, 813 |
| PagI | TCATGA | 1 cut(s) | 861 |
| PceI | AGGCCT | 1 cut(s) | 472 |
| PdmI | GAANNNNTTC | 1 cut(s) | 256 |
| PfeI | GAWTC | 4 cut(s) | 9, 315, 367, 691 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| PleI | GAGTC | 2 cut(s) | 314, 887 |
| PpsI | GAGTC | 2 cut(s) | 314, 887 |
| Ppu21I | YACGTR | 1 cut(s) | 555 |
| PpuMI | RGGWCCY | 1 cut(s) | 461 |
| Psp124BI | GAGCTC | 1 cut(s) | 237 |
| Psp5II | RGGWCCY | 1 cut(s) | 461 |
| PspN4I | GGNNCC | 2 cut(s) | 38, 813 |
| PspPI | GGNCC | 3 cut(s) | 37, 461, 591 |
| PspPPI | RGGWCCY | 1 cut(s) | 461 |
| PstI | CTGCAG | 1 cut(s) | 304 |
| PsuI | RGATCY | 2 cut(s) | 133, 811 |
| RsaI | GTAC | 1 cut(s) | 769 |
| RsaNI | GTAC | 1 cut(s) | 768 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SacI | GAGCTC | 1 cut(s) | 237 |
| SaqAI | TTAA | 2 cut(s) | 168, 680 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 7 cut(s) | 133, 240, 522, 542, 586, 811, 837 |
| Sau96I | GGNCC | 3 cut(s) | 37, 461, 591 |
| SchI | GAGTC | 2 cut(s) | 315, 888 |
| SduI | GDGCHC | 2 cut(s) | 187, 237 |
| SfaNI | GCATC | 2 cut(s) | 52, 783 |
| SfcI | CTRYAG | 3 cut(s) | 300, 342, 474 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| Sse9I | AATT | 2 cut(s) | 28, 681 |
| SseBI | AGGCCT | 1 cut(s) | 472 |
| SspI | AATATT | 1 cut(s) | 76 |
| SspMI | CTAG | 2 cut(s) | 96, 468 |
| SstI | GAGCTC | 1 cut(s) | 237 |
| StuI | AGGCCT | 1 cut(s) | 472 |
| StyI | CCWWGG | 2 cut(s) | 404, 467 |
| TaaI | ACNGT | 1 cut(s) | 604 |
| TaiI | ACGT | 2 cut(s) | 550, 557 |
| TaqI | TCGA | 5 cut(s) | 82, 239, 313, 525, 715 |
| TasI | AATT | 2 cut(s) | 28, 681 |
| TatI | WGTACW | 1 cut(s) | 767 |
| TfiI | GAWTC | 4 cut(s) | 9, 315, 367, 691 |
| Tru1I | TTAA | 2 cut(s) | 168, 680 |
| Tru9I | TTAA | 2 cut(s) | 168, 680 |
| TscAI | CASTG | 4 cut(s) | 325, 510, 609, 674 |
| TseI | GCWGC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 2 cut(s) | 850, 878 |
| TspGWI | ACGGA | 1 cut(s) | 233 |
| TspRI | CASTG | 4 cut(s) | 325, 510, 609, 674 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XmaJI | CCTAGG | 1 cut(s) | 467 |
| XmiI | GTMKAC | 1 cut(s) | 882 |
| XmnI | GAANNNNTTC | 1 cut(s) | 256 |
| XspI | CTAG | 2 cut(s) | 96, 468 |