ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 298 |
| AciI | CCGC | 1 cut(s) | 33 |
| AclWI | GGATC | 2 cut(s) | 194, 715 |
| AcuI | CTGAAG | 1 cut(s) | 692 |
| AfaI | GTAC | 2 cut(s) | 126, 159 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 21, 63, 84, 103, 614 |
| AflIII | ACRYGT | 1 cut(s) | 793 |
| AgsI | TTSAA | 4 cut(s) | 407, 494, 547, 632 |
| AjnI | CCWGG | 1 cut(s) | 202 |
| AleI | CACNNNNGTG | 1 cut(s) | 702 |
| AluBI | AGCT | 2 cut(s) | 342, 402 |
| AluI | AGCT | 2 cut(s) | 342, 402 |
| Alw26I | GTCTC | 3 cut(s) | 332, 505, 606 |
| AlwI | GGATC | 2 cut(s) | 194, 715 |
| AoxI | GGCC | 1 cut(s) | 268 |
| ApeKI | GCWGC | 3 cut(s) | 248, 281, 284 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 723, 755 |
| AspS9I | GGNCC | 1 cut(s) | 269 |
| AsuC2I | CCSGG | 1 cut(s) | 86 |
| AsuHPI | GGTGA | 5 cut(s) | 46, 162, 442, 604, 753 |
| BauI | CACGAG | 1 cut(s) | 276 |
| BbvI | GCAGC | 3 cut(s) | 260, 268, 296 |
| BccI | CCATC | 2 cut(s) | 617, 772 |
| BciT130I | CCWGG | 1 cut(s) | 204 |
| BclI | TGATCA | 1 cut(s) | 447 |
| BcnI | CCSGG | 1 cut(s) | 86 |
| BcoDI | GTCTC | 3 cut(s) | 332, 505, 606 |
| BfmI | CTRYAG | 1 cut(s) | 282 |
| BfuAI | ACCTGC | 1 cut(s) | 298 |
| BisI | GCNGC | 4 cut(s) | 33, 249, 282, 285 |
| BlsI | GCNGC | 4 cut(s) | 34, 250, 283, 286 |
| Bme1390I | CCNGG | 2 cut(s) | 86, 204 |
| BmgT120I | GGNCC | 1 cut(s) | 269 |
| BmrFI | CCNGG | 2 cut(s) | 86, 204 |
| BmsI | GCATC | 3 cut(s) | 159, 175, 563 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 95, 127 |
| BpmI | CTGGAG | 3 cut(s) | 57, 225, 252 |
| BpuMI | CCSGG | 1 cut(s) | 86 |
| BsaAI | YACGTR | 1 cut(s) | 363 |
| BsaBI | GATNNNNATC | 1 cut(s) | 477 |
| BsaI | GGTCTC | 2 cut(s) | 332, 606 |
| BsaWI | WCCGGW | 3 cut(s) | 56, 63, 614 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 442, 472, 514, 544 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 21, 63, 84, 103, 614 |
| Bse1I | ACTGG | 3 cut(s) | 235, 602, 839 |
| Bse3DI | GCAATG | 1 cut(s) | 422 |
| Bse8I | GATNNNNATC | 1 cut(s) | 477 |
| BseBI | CCWGG | 1 cut(s) | 204 |
| BseJI | GATNNNNATC | 1 cut(s) | 477 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 21, 63, 84, 103, 614 |
| BseMI | GCAATG | 1 cut(s) | 422 |
| BseMII | CTCAG | 2 cut(s) | 617, 678 |
| BseNI | ACTGG | 3 cut(s) | 235, 602, 839 |
| BseRI | GAGGAG | 6 cut(s) | 264, 518, 523, 535, 581, 791 |
| BseXI | GCAGC | 3 cut(s) | 260, 268, 296 |
| BshFI | GGCC | 1 cut(s) | 270 |
| BsiSI | CCGG | 6 cut(s) | 15, 57, 64, 78, 85, 615 |
| BsiWI | CGTACG | 1 cut(s) | 157 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 21, 63, 84, 103, 614 |
| BsmAI | GTCTC | 3 cut(s) | 332, 505, 606 |
| BsmI | GAATGC | 1 cut(s) | 429 |
| BsnI | GGCC | 1 cut(s) | 270 |
| Bso31I | GGTCTC | 2 cut(s) | 332, 606 |
| Bsp143I | GATC | 5 cut(s) | 199, 394, 447, 472, 720 |
| BspACI | CCGC | 1 cut(s) | 33 |
| BspANI | GGCC | 1 cut(s) | 270 |
| BspCNI | CTCAG | 2 cut(s) | 616, 679 |
| BspHI | TCATGA | 1 cut(s) | 378 |
| BspMAI | CTGCAG | 1 cut(s) | 286 |
| BspMI | ACCTGC | 1 cut(s) | 298 |
| BspPI | GGATC | 2 cut(s) | 194, 715 |
| BspTNI | GGTCTC | 2 cut(s) | 332, 606 |
| BsrDI | GCAATG | 1 cut(s) | 422 |
| BsrI | ACTGG | 3 cut(s) | 235, 602, 839 |
| BssMI | GATC | 5 cut(s) | 199, 394, 447, 472, 720 |
| BssSI | CACGAG | 1 cut(s) | 276 |
| Bst2BI | CACGAG | 1 cut(s) | 276 |
| Bst2UI | CCWGG | 1 cut(s) | 204 |
| Bst4CI | ACNGT | 3 cut(s) | 52, 224, 300 |
| BstBAI | YACGTR | 1 cut(s) | 363 |
| BstC8I | GCNNGC | 1 cut(s) | 253 |
| BstDEI | CTNAG | 2 cut(s) | 603, 687 |
| BstKTI | GATC | 5 cut(s) | 202, 397, 450, 475, 723 |
| BstMAI | GTCTC | 3 cut(s) | 332, 505, 606 |
| BstMBI | GATC | 5 cut(s) | 199, 394, 447, 472, 720 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 293 |
| BstNI | CCWGG | 1 cut(s) | 204 |
| BstNSI | RCATGY | 1 cut(s) | 797 |
| BstSCI | CCNGG | 2 cut(s) | 84, 202 |
| BstSFI | CTRYAG | 1 cut(s) | 282 |
| BstV1I | GCAGC | 3 cut(s) | 260, 268, 296 |
| BstX2I | RGATCY | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 199 |
| BsuRI | GGCC | 1 cut(s) | 270 |
| BtsI | GCAGTG | 2 cut(s) | 576, 651 |
| BtsIMutI | CAGTG | 3 cut(s) | 576, 595, 651 |
| BveI | ACCTGC | 1 cut(s) | 298 |
| Cac8I | GCNNGC | 1 cut(s) | 253 |
| CciI | TCATGA | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 1 cut(s) | 269 |
| Csp6I | GTAC | 2 cut(s) | 125, 158 |
| CviAII | CATG | 5 cut(s) | 43, 101, 379, 745, 794 |
| CviJI | RGCY | 7 cut(s) | 89, 215, 270, 342, 402, 607, 728 |
| CviKI_1 | RGCY | 7 cut(s) | 89, 215, 270, 342, 402, 607, 728 |
| CviQI | GTAC | 2 cut(s) | 125, 158 |
| DdeI | CTNAG | 2 cut(s) | 603, 687 |
| DpnI | GATC | 5 cut(s) | 201, 396, 449, 474, 722 |
| DpnII | GATC | 5 cut(s) | 199, 394, 447, 472, 720 |
| Eco31I | GGTCTC | 2 cut(s) | 332, 606 |
| Eco32I | GATATC | 1 cut(s) | 145 |
| Eco57I | CTGAAG | 1 cut(s) | 692 |
| EcoRII | CCWGG | 1 cut(s) | 202 |
| EcoRV | GATATC | 1 cut(s) | 145 |
| EcoT22I | ATGCAT | 1 cut(s) | 717 |
| FaeI | CATG | 5 cut(s) | 46, 104, 382, 748, 797 |
| FatI | CATG | 5 cut(s) | 42, 100, 378, 744, 793 |
| FauNDI | CATATG | 1 cut(s) | 717 |
| FbaI | TGATCA | 1 cut(s) | 447 |
| Fnu4HI | GCNGC | 4 cut(s) | 33, 249, 282, 285 |
| Fsp4HI | GCNGC | 4 cut(s) | 33, 249, 282, 285 |
| GluI | GCNGC | 4 cut(s) | 33, 249, 282, 285 |
| GsuI | CTGGAG | 3 cut(s) | 57, 225, 252 |
| HaeIII | GGCC | 1 cut(s) | 270 |
| HapII | CCGG | 6 cut(s) | 15, 57, 64, 78, 85, 615 |
| Hin1II | CATG | 5 cut(s) | 46, 104, 382, 748, 797 |
| HincII | GTYRAC | 1 cut(s) | 48 |
| HindII | GTYRAC | 1 cut(s) | 48 |
| HindIII | AAGCTT | 1 cut(s) | 400 |
| HinfI | GANTC | 6 cut(s) | 39, 60, 81, 110, 467, 537 |
| HpaII | CCGG | 6 cut(s) | 15, 57, 64, 78, 85, 615 |
| HphI | GGTGA | 5 cut(s) | 46, 162, 442, 604, 753 |
| Hpy166II | GTNNAC | 2 cut(s) | 48, 360 |
| Hpy188I | TCNGA | 4 cut(s) | 24, 472, 591, 672 |
| Hpy188III | TCNNGA | 3 cut(s) | 379, 392, 662 |
| Hpy8I | GTNNAC | 2 cut(s) | 48, 360 |
| HpyAV | CCTTC | 2 cut(s) | 376, 766 |
| HpyCH4III | ACNGT | 3 cut(s) | 52, 224, 300 |
| HpyCH4IV | ACGT | 3 cut(s) | 362, 388, 703 |
| HpyCH4V | TGCA | 6 cut(s) | 188, 248, 284, 415, 576, 715 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 293 |
| HpyF3I | CTNAG | 2 cut(s) | 603, 687 |
| HpySE526I | ACGT | 3 cut(s) | 362, 388, 703 |
| Hsp92II | CATG | 5 cut(s) | 46, 104, 382, 748, 797 |
| Ksp22I | TGATCA | 1 cut(s) | 447 |
| Kzo9I | GATC | 5 cut(s) | 199, 394, 447, 472, 720 |
| LmnI | GCTCC | 1 cut(s) | 778 |
| Lsp1109I | GCAGC | 3 cut(s) | 260, 268, 296 |
| LweI | GCATC | 3 cut(s) | 159, 175, 563 |
| MaeII | ACGT | 3 cut(s) | 362, 388, 703 |
| MaeIII | GTNAC | 2 cut(s) | 52, 92 |
| MalI | GATC | 5 cut(s) | 201, 396, 449, 474, 722 |
| MboI | GATC | 5 cut(s) | 199, 394, 447, 472, 720 |
| MboII | GAAGA | 1 cut(s) | 329 |
| MflI | RGATCY | 1 cut(s) | 199 |
| MluCI | AATT | 4 cut(s) | 192, 633, 732, 809 |
| MlyI | GAGTC | 3 cut(s) | 48, 69, 104 |
| MmeI | TCCRAC | 1 cut(s) | 718 |
| Mph1103I | ATGCAT | 1 cut(s) | 717 |
| MslI | CAYNNNNRTG | 2 cut(s) | 183, 702 |
| MspA1I | CMGCKG | 1 cut(s) | 35 |
| MspI | CCGG | 6 cut(s) | 15, 57, 64, 78, 85, 615 |
| MspR9I | CCNGG | 2 cut(s) | 86, 204 |
| Mva1269I | GAATGC | 1 cut(s) | 429 |
| MvaI | CCWGG | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 293 |
| NciI | CCSGG | 1 cut(s) | 86 |
| NdeI | CATATG | 1 cut(s) | 717 |
| NdeII | GATC | 5 cut(s) | 199, 394, 447, 472, 720 |
| NlaIII | CATG | 5 cut(s) | 46, 104, 382, 748, 797 |
| NmuCI | GTSAC | 1 cut(s) | 52 |
| NsiI | ATGCAT | 1 cut(s) | 717 |
| NspI | RCATGY | 1 cut(s) | 797 |
| OliI | CACNNNNGTG | 1 cut(s) | 702 |
| PagI | TCATGA | 1 cut(s) | 378 |
| PciI | ACATGT | 1 cut(s) | 793 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 394 |
| PctI | GAATGC | 1 cut(s) | 429 |
| PfeI | GAWTC | 3 cut(s) | 81, 467, 537 |
| Pfl23II | CGTACG | 1 cut(s) | 157 |
| PfoI | TCCNGGA | 1 cut(s) | 202 |
| PkrI | GCNGC | 4 cut(s) | 34, 250, 283, 286 |
| PleI | GAGTC | 3 cut(s) | 47, 68, 104 |
| PpsI | GAGTC | 3 cut(s) | 47, 68, 104 |
| Ppu21I | YACGTR | 1 cut(s) | 363 |
| PscI | ACATGT | 1 cut(s) | 793 |
| Psp6I | CCWGG | 1 cut(s) | 202 |
| PspGI | CCWGG | 1 cut(s) | 202 |
| PspLI | CGTACG | 1 cut(s) | 157 |
| PspPI | GGNCC | 1 cut(s) | 269 |
| PstI | CTGCAG | 1 cut(s) | 286 |
| PsuI | RGATCY | 1 cut(s) | 199 |
| RsaI | GTAC | 2 cut(s) | 126, 159 |
| RsaNI | GTAC | 2 cut(s) | 125, 158 |
| RseI | CAYNNNNRTG | 2 cut(s) | 183, 702 |
| SatI | GCNGC | 4 cut(s) | 33, 249, 282, 285 |
| Sau3AI | GATC | 5 cut(s) | 199, 394, 447, 472, 720 |
| Sau96I | GGNCC | 1 cut(s) | 269 |
| SchI | GAGTC | 3 cut(s) | 48, 69, 104 |
| ScrFI | CCNGG | 2 cut(s) | 86, 204 |
| SfaNI | GCATC | 3 cut(s) | 159, 175, 563 |
| SfcI | CTRYAG | 1 cut(s) | 282 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 183, 702 |
| Sse9I | AATT | 4 cut(s) | 192, 633, 732, 809 |
| SsiI | CCGC | 1 cut(s) | 33 |
| StyD4I | CCNGG | 2 cut(s) | 84, 202 |
| TaaI | ACNGT | 3 cut(s) | 52, 224, 300 |
| TaiI | ACGT | 3 cut(s) | 365, 391, 706 |
| TaqI | TCGA | 3 cut(s) | 71, 217, 397 |
| TasI | AATT | 4 cut(s) | 192, 633, 732, 809 |
| TatI | WGTACW | 1 cut(s) | 124 |
| TauI | GCSGC | 1 cut(s) | 35 |
| TfiI | GAWTC | 3 cut(s) | 81, 467, 537 |
| TscAI | CASTG | 3 cut(s) | 583, 602, 658 |
| TseFI | GTSAC | 1 cut(s) | 52 |
| TseI | GCWGC | 3 cut(s) | 248, 281, 284 |
| Tsp45I | GTSAC | 1 cut(s) | 52 |
| TspDTI | ATGAA | 2 cut(s) | 367, 395 |
| TspGWI | ACGGA | 1 cut(s) | 788 |
| TspRI | CASTG | 3 cut(s) | 583, 602, 658 |
| XceI | RCATGY | 1 cut(s) | 797 |
| Zsp2I | ATGCAT | 1 cut(s) | 717 |