Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 528 |
| AarI | CACCTGC | 1 cut(s) | 236 |
| Acc36I | ACCTGC | 1 cut(s) | 236 |
| AccI | GTMKAC | 1 cut(s) | 553 |
| AciI | CCGC | 1 cut(s) | 769 |
| AclI | AACGTT | 1 cut(s) | 15 |
| AcoI | YGGCCR | 1 cut(s) | 672 |
| AcsI | RAATTY | 2 cut(s) | 60, 901 |
| AfaI | GTAC | 1 cut(s) | 706 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 508, 635 |
| AgsI | TTSAA | 5 cut(s) | 7, 256, 569, 611, 886 |
| AjnI | CCWGG | 1 cut(s) | 366 |
| AleI | CACNNNNGTG | 1 cut(s) | 149 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 436, 468 |
| AluBI | AGCT | 2 cut(s) | 212, 305 |
| AluI | AGCT | 2 cut(s) | 212, 305 |
| Alw26I | GTCTC | 1 cut(s) | 812 |
| AoxI | GGCC | 2 cut(s) | 346, 672 |
| ApeKI | GCWGC | 6 cut(s) | 43, 212, 302, 305, 317, 772 |
| ApoI | RAATTY | 2 cut(s) | 60, 901 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 536 |
| AspLEI | GCGC | 1 cut(s) | 43 |
| AspS9I | GGNCC | 2 cut(s) | 26, 290 |
| AsuC2I | CCSGG | 2 cut(s) | 128, 286 |
| AsuHPI | GGTGA | 3 cut(s) | 218, 260, 905 |
| AvaII | GGWCC | 2 cut(s) | 26, 290 |
| BaeGI | GKGCMC | 1 cut(s) | 208 |
| BalI | TGGCCA | 1 cut(s) | 674 |
| BauI | CACGAG | 1 cut(s) | 297 |
| BbsI | GAAGAC | 1 cut(s) | 282 |
| BbvI | GCAGC | 6 cut(s) | 30, 199, 292, 304, 314, 784 |
| BccI | CCATC | 1 cut(s) | 884 |
| BceAI | ACGGC | 1 cut(s) | 25 |
| BciT130I | CCWGG | 1 cut(s) | 368 |
| BcnI | CCSGG | 2 cut(s) | 128, 286 |
| BcoDI | GTCTC | 1 cut(s) | 812 |
| BfaI | CTAG | 3 cut(s) | 20, 209, 870 |
| BfmI | CTRYAG | 2 cut(s) | 213, 630 |
| BfuAI | ACCTGC | 1 cut(s) | 236 |
| BisI | GCNGC | 7 cut(s) | 44, 213, 303, 306, 318, 770, 773 |
| BlsI | GCNGC | 7 cut(s) | 45, 214, 304, 307, 319, 771, 774 |
| Bme1390I | CCNGG | 3 cut(s) | 128, 286, 368 |
| Bme18I | GGWCC | 2 cut(s) | 26, 290 |
| BmgT120I | GGNCC | 2 cut(s) | 26, 290 |
| BmiI | GGNNCC | 3 cut(s) | 27, 291, 292 |
| BmrFI | CCNGG | 3 cut(s) | 128, 286, 368 |
| BpiI | GAAGAC | 1 cut(s) | 282 |
| BpuMI | CCSGG | 2 cut(s) | 128, 286 |
| BsaJI | CCNNGG | 4 cut(s) | 118, 233, 285, 367 |
| BsaWI | WCCGGW | 1 cut(s) | 784 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 795, 825 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 508, 635 |
| Bse1I | ACTGG | 1 cut(s) | 682 |
| Bse3DI | GCAATG | 2 cut(s) | 496, 701 |
| BseBI | CCWGG | 1 cut(s) | 368 |
| BseDI | CCNNGG | 4 cut(s) | 118, 233, 285, 367 |
| BseGI | GGATG | 2 cut(s) | 880, 895 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 508, 635 |
| BseMI | GCAATG | 2 cut(s) | 496, 701 |
| BseMII | CTCAG | 2 cut(s) | 504, 509 |
| BseNI | ACTGG | 1 cut(s) | 682 |
| BseRI | GAGGAG | 3 cut(s) | 78, 800, 812 |
| BseSI | GKGCMC | 1 cut(s) | 208 |
| BseXI | GCAGC | 6 cut(s) | 30, 199, 292, 304, 314, 784 |
| BseYI | CCCAGC | 1 cut(s) | 840 |
| BsgI | GTGCAG | 1 cut(s) | 321 |
| BshFI | GGCC | 2 cut(s) | 348, 674 |
| BsiSI | CCGG | 4 cut(s) | 128, 285, 325, 785 |
| BslFI | GGGAC | 3 cut(s) | 39, 48, 303 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 508, 635 |
| BsmAI | GTCTC | 1 cut(s) | 812 |
| BsmBI | CGTCTC | 1 cut(s) | 812 |
| BsmFI | GGGAC | 3 cut(s) | 39, 48, 303 |
| BsnI | GGCC | 2 cut(s) | 348, 674 |
| Bsp1286I | GDGCHC | 1 cut(s) | 208 |
| Bsp143I | GATC | 2 cut(s) | 70, 866 |
| BspACI | CCGC | 1 cut(s) | 769 |
| BspANI | GGCC | 2 cut(s) | 348, 674 |
| BspCNI | CTCAG | 2 cut(s) | 503, 510 |
| BspLI | GGNNCC | 3 cut(s) | 27, 291, 292 |
| BspMAI | CTGCAG | 1 cut(s) | 217 |
| BspMI | ACCTGC | 1 cut(s) | 236 |
| BsrDI | GCAATG | 2 cut(s) | 496, 701 |
| BsrI | ACTGG | 1 cut(s) | 682 |
| BssECI | CCNNGG | 4 cut(s) | 118, 233, 285, 367 |
| BssMI | GATC | 2 cut(s) | 70, 866 |
| BssSI | CACGAG | 1 cut(s) | 297 |
| BssT1I | CCWWGG | 1 cut(s) | 233 |
| Bst2BI | CACGAG | 1 cut(s) | 297 |
| Bst2UI | CCWGG | 1 cut(s) | 368 |
| Bst4CI | ACNGT | 4 cut(s) | 56, 469, 634, 704 |
| Bst6I | CTCTTC | 1 cut(s) | 564 |
| BstC8I | GCNNGC | 1 cut(s) | 330 |
| BstDEI | CTNAG | 4 cut(s) | 74, 402, 490, 518 |
| BstEII | GGTNACC | 1 cut(s) | 122 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 633 |
| BstF5I | GGATG | 2 cut(s) | 880, 895 |
| BstHHI | GCGC | 1 cut(s) | 43 |
| BstKTI | GATC | 2 cut(s) | 73, 869 |
| BstMAI | GTCTC | 1 cut(s) | 812 |
| BstMBI | GATC | 2 cut(s) | 70, 866 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 156, 212, 314, 841 |
| BstNI | CCWGG | 1 cut(s) | 368 |
| BstPI | GGTNACC | 1 cut(s) | 122 |
| BstSCI | CCNGG | 3 cut(s) | 126, 284, 366 |
| BstSFI | CTRYAG | 2 cut(s) | 213, 630 |
| BstSLI | GKGCMC | 1 cut(s) | 208 |
| BstV1I | GCAGC | 6 cut(s) | 30, 199, 292, 304, 314, 784 |
| BstV2I | GAAGAC | 1 cut(s) | 282 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 511 |
| BsuRI | GGCC | 2 cut(s) | 348, 674 |
| BtgZI | GCGATG | 1 cut(s) | 347 |
| BtsCI | GGATG | 2 cut(s) | 880, 895 |
| BtsIMutI | CAGTG | 3 cut(s) | 61, 675, 700 |
| BveI | ACCTGC | 1 cut(s) | 236 |
| Cac8I | GCNNGC | 1 cut(s) | 330 |
| CfoI | GCGC | 1 cut(s) | 43 |
| Cfr13I | GGNCC | 2 cut(s) | 26, 290 |
| Csp6I | GTAC | 1 cut(s) | 705 |
| CviAII | CATG | 7 cut(s) | 65, 241, 265, 358, 448, 766, 815 |
| CviQI | GTAC | 1 cut(s) | 705 |
| DdeI | CTNAG | 4 cut(s) | 74, 402, 490, 518 |
| DpnI | GATC | 2 cut(s) | 72, 868 |
| DpnII | GATC | 2 cut(s) | 70, 866 |
| EaeI | YGGCCR | 1 cut(s) | 672 |
| Eam1104I | CTCTTC | 1 cut(s) | 564 |
| EarI | CTCTTC | 1 cut(s) | 564 |
| Eco130I | CCWWGG | 1 cut(s) | 233 |
| Eco32I | GATATC | 1 cut(s) | 763 |
| Eco47I | GGWCC | 2 cut(s) | 26, 290 |
| Eco91I | GGTNACC | 1 cut(s) | 122 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 633 |
| EcoO109I | RGGNCCY | 1 cut(s) | 290 |
| EcoO65I | GGTNACC | 1 cut(s) | 122 |
| EcoRII | CCWGG | 1 cut(s) | 366 |
| EcoRV | GATATC | 1 cut(s) | 763 |
| EcoT14I | CCWWGG | 1 cut(s) | 233 |
| ErhI | CCWWGG | 1 cut(s) | 233 |
| Esp3I | CGTCTC | 1 cut(s) | 812 |
| FaeI | CATG | 7 cut(s) | 68, 244, 268, 361, 451, 769, 818 |
| FaqI | GGGAC | 3 cut(s) | 39, 48, 303 |
| FatI | CATG | 7 cut(s) | 64, 240, 264, 357, 447, 765, 814 |
| FblI | GTMKAC | 1 cut(s) | 553 |
| Fnu4HI | GCNGC | 7 cut(s) | 44, 213, 303, 306, 318, 770, 773 |
| FokI | GGATG | 2 cut(s) | 887, 902 |
| Fsp4HI | GCNGC | 7 cut(s) | 44, 213, 303, 306, 318, 770, 773 |
| FspBI | CTAG | 3 cut(s) | 20, 209, 870 |
| GlaI | GCGC | 1 cut(s) | 42 |
| GluI | GCNGC | 7 cut(s) | 44, 213, 303, 306, 318, 770, 773 |
| GsaI | CCCAGC | 1 cut(s) | 844 |
| HaeIII | GGCC | 2 cut(s) | 348, 674 |
| HapII | CCGG | 4 cut(s) | 128, 285, 325, 785 |
| HhaI | GCGC | 1 cut(s) | 43 |
| Hin1II | CATG | 7 cut(s) | 68, 244, 268, 361, 451, 769, 818 |
| Hin6I | GCGC | 1 cut(s) | 41 |
| HinP1I | GCGC | 1 cut(s) | 41 |
| HincII | GTYRAC | 1 cut(s) | 554 |
| HindII | GTYRAC | 1 cut(s) | 554 |
| HinfI | GANTC | 2 cut(s) | 488, 558 |
| HpaII | CCGG | 4 cut(s) | 128, 285, 325, 785 |
| HphI | GGTGA | 3 cut(s) | 218, 260, 905 |
| Hpy166II | GTNNAC | 5 cut(s) | 176, 355, 381, 399, 554 |
| Hpy188I | TCNGA | 4 cut(s) | 443, 493, 542, 563 |
| Hpy188III | TCNNGA | 1 cut(s) | 20 |
| Hpy8I | GTNNAC | 5 cut(s) | 176, 355, 381, 399, 554 |
| Hpy99I | CGWCG | 1 cut(s) | 558 |
| HpyAV | CCTTC | 3 cut(s) | 239, 880, 919 |
| HpyCH4III | ACNGT | 4 cut(s) | 56, 469, 634, 704 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 178, 805 |
| HpyCH4V | TGCA | 5 cut(s) | 215, 302, 694, 782, 951 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 156, 212, 314, 841 |
| HpyF3I | CTNAG | 4 cut(s) | 74, 402, 490, 518 |
| HpySE526I | ACGT | 3 cut(s) | 15, 178, 805 |
| Hsp92II | CATG | 7 cut(s) | 68, 244, 268, 361, 451, 769, 818 |
| HspAI | GCGC | 1 cut(s) | 41 |
| KflI | GGGWCCC | 1 cut(s) | 290 |
| Kzo9I | GATC | 2 cut(s) | 70, 866 |
| LmnI | GCTCC | 2 cut(s) | 313, 799 |
| Lsp1109I | GCAGC | 6 cut(s) | 30, 199, 292, 304, 314, 784 |
| MaeI | CTAG | 3 cut(s) | 20, 209, 870 |
| MaeII | ACGT | 3 cut(s) | 15, 178, 805 |
| MaeIII | GTNAC | 3 cut(s) | 122, 224, 248 |
| MalI | GATC | 2 cut(s) | 72, 868 |
| MboI | GATC | 2 cut(s) | 70, 866 |
| MboII | GAAGA | 3 cut(s) | 230, 287, 581 |
| MfeI | CAATTG | 1 cut(s) | 830 |
| MhlI | GDGCHC | 1 cut(s) | 208 |
| MlsI | TGGCCA | 1 cut(s) | 674 |
| MluCI | AATT | 7 cut(s) | 60, 616, 731, 752, 830, 901, 946 |
| MluNI | TGGCCA | 1 cut(s) | 674 |
| MlyI | GAGTC | 1 cut(s) | 482 |
| MnlI | CCTC | 9 cut(s) | 16, 99, 128, 164, 306, 449, 729, 790, 821 |
| Mox20I | TGGCCA | 1 cut(s) | 674 |
| MroXI | GAANNNNTTC | 1 cut(s) | 536 |
| MscI | TGGCCA | 1 cut(s) | 674 |
| MseI | TTAA | 1 cut(s) | 111 |
| MslI | CAYNNNNRTG | 4 cut(s) | 99, 149, 509, 585 |
| Msp20I | TGGCCA | 1 cut(s) | 674 |
| MspA1I | CMGCKG | 1 cut(s) | 305 |
| MspI | CCGG | 4 cut(s) | 128, 285, 325, 785 |
| MspR9I | CCNGG | 3 cut(s) | 128, 286, 368 |
| MunI | CAATTG | 1 cut(s) | 830 |
| MvaI | CCWGG | 1 cut(s) | 368 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 156, 212, 314, 841 |
| NciI | CCSGG | 2 cut(s) | 128, 286 |
| NdeII | GATC | 2 cut(s) | 70, 866 |
| NlaIII | CATG | 7 cut(s) | 68, 244, 268, 361, 451, 769, 818 |
| NlaIV | GGNNCC | 3 cut(s) | 27, 291, 292 |
| NmuCI | GTSAC | 2 cut(s) | 224, 248 |
| OliI | CACNNNNGTG | 1 cut(s) | 149 |
| PaqCI | CACCTGC | 1 cut(s) | 236 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 559 |
| PdmI | GAANNNNTTC | 1 cut(s) | 536 |
| PfeI | GAWTC | 1 cut(s) | 558 |
| PflFI | GACNNNGTC | 1 cut(s) | 825 |
| PkrI | GCNGC | 7 cut(s) | 45, 214, 304, 307, 319, 771, 774 |
| PleI | GAGTC | 1 cut(s) | 482 |
| PpsI | GAGTC | 1 cut(s) | 482 |
| PpuMI | RGGWCCY | 1 cut(s) | 290 |
| PsiI | TTATAA | 1 cut(s) | 528 |
| Psp1406I | AACGTT | 1 cut(s) | 15 |
| Psp5II | RGGWCCY | 1 cut(s) | 290 |
| Psp6I | CCWGG | 1 cut(s) | 366 |
| PspEI | GGTNACC | 1 cut(s) | 122 |
| PspFI | CCCAGC | 1 cut(s) | 840 |
| PspGI | CCWGG | 1 cut(s) | 366 |
| PspN4I | GGNNCC | 3 cut(s) | 27, 291, 292 |
| PspPI | GGNCC | 2 cut(s) | 26, 290 |
| PspPPI | RGGWCCY | 1 cut(s) | 290 |
| PstI | CTGCAG | 1 cut(s) | 217 |
| PsyI | GACNNNGTC | 1 cut(s) | 825 |
| PvuII | CAGCTG | 1 cut(s) | 305 |
| RsaI | GTAC | 1 cut(s) | 706 |
| RsaNI | GTAC | 1 cut(s) | 705 |
| RseI | CAYNNNNRTG | 4 cut(s) | 99, 149, 509, 585 |
| SalI | GTCGAC | 1 cut(s) | 552 |
| SaqAI | TTAA | 1 cut(s) | 111 |
| SatI | GCNGC | 7 cut(s) | 44, 213, 303, 306, 318, 770, 773 |
| Sau3AI | GATC | 2 cut(s) | 70, 866 |
| Sau96I | GGNCC | 2 cut(s) | 26, 290 |
| SchI | GAGTC | 1 cut(s) | 482 |
| ScrFI | CCNGG | 3 cut(s) | 128, 286, 368 |
| SduI | GDGCHC | 1 cut(s) | 208 |
| SfcI | CTRYAG | 2 cut(s) | 213, 630 |
| SinI | GGWCC | 2 cut(s) | 26, 290 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 99, 149, 509, 585 |
| Sse9I | AATT | 7 cut(s) | 60, 616, 731, 752, 830, 901, 946 |
| SsiI | CCGC | 1 cut(s) | 769 |
| SspMI | CTAG | 3 cut(s) | 20, 209, 870 |
| StyD4I | CCNGG | 3 cut(s) | 126, 284, 366 |
| StyI | CCWWGG | 1 cut(s) | 233 |
| TaaI | ACNGT | 4 cut(s) | 56, 469, 634, 704 |
| TaiI | ACGT | 3 cut(s) | 18, 181, 808 |
| TaqI | TCGA | 2 cut(s) | 553, 919 |
| TasI | AATT | 7 cut(s) | 60, 616, 731, 752, 830, 901, 946 |
| TatI | WGTACW | 1 cut(s) | 704 |
| TauI | GCSGC | 1 cut(s) | 772 |
| TfiI | GAWTC | 1 cut(s) | 558 |
| Tru1I | TTAA | 1 cut(s) | 111 |
| Tru9I | TTAA | 1 cut(s) | 111 |
| TscAI | CASTG | 3 cut(s) | 61, 682, 707 |
| TseFI | GTSAC | 2 cut(s) | 224, 248 |
| TseI | GCWGC | 6 cut(s) | 43, 212, 302, 305, 317, 772 |
| Tsp45I | GTSAC | 2 cut(s) | 224, 248 |
| TspDTI | ATGAA | 4 cut(s) | 53, 273, 603, 905 |
| TspRI | CASTG | 3 cut(s) | 61, 682, 707 |
| Tth111I | GACNNNGTC | 1 cut(s) | 825 |
| VpaK11BI | GGWCC | 2 cut(s) | 26, 290 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 633 |
| XapI | RAATTY | 2 cut(s) | 60, 901 |
| XbaI | TCTAGA | 1 cut(s) | 19 |
| XmiI | GTMKAC | 1 cut(s) | 553 |
| XmnI | GAANNNNTTC | 1 cut(s) | 536 |
| XspI | CTAG | 3 cut(s) | 20, 209, 870 |