ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 196 | 1.1e-11 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 115, 286 |
| AatII | GACGTC | 1 cut(s) | 370 |
| Acc36I | ACCTGC | 3 cut(s) | 115, 286, 834 |
| AccI | GTMKAC | 1 cut(s) | 694 |
| AccII | CGCG | 2 cut(s) | 27, 823 |
| AccIII | TCCGGA | 1 cut(s) | 325 |
| AciI | CCGC | 1 cut(s) | 603 |
| AclWI | GGATC | 3 cut(s) | 77, 418, 585 |
| AcoI | YGGCCR | 1 cut(s) | 600 |
| AcsI | RAATTY | 2 cut(s) | 524, 858 |
| AcvI | CACGTG | 1 cut(s) | 546 |
| AcyI | GRCGYC | 2 cut(s) | 343, 367 |
| AfaI | GTAC | 1 cut(s) | 564 |
| AfeI | AGCGCT | 1 cut(s) | 360 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 332, 640 |
| AflII | CTTAAG | 1 cut(s) | 59 |
| AgsI | TTSAA | 4 cut(s) | 52, 287, 418, 473 |
| AluBI | AGCT | 6 cut(s) | 15, 31, 173, 278, 467, 623 |
| AluI | AGCT | 6 cut(s) | 15, 31, 173, 278, 467, 623 |
| Alw21I | GWGCWC | 1 cut(s) | 625 |
| Alw26I | GTCTC | 4 cut(s) | 101, 374, 680, 712 |
| AlwI | GGATC | 3 cut(s) | 77, 418, 585 |
| Ama87I | CYCGRG | 1 cut(s) | 618 |
| Aor13HI | TCCGGA | 1 cut(s) | 325 |
| Aor51HI | AGCGCT | 1 cut(s) | 360 |
| AoxI | GGCC | 2 cut(s) | 75, 600 |
| ApaI | GGGCCC | 1 cut(s) | 79 |
| ApoI | RAATTY | 2 cut(s) | 524, 858 |
| AspLEI | GCGC | 3 cut(s) | 27, 361, 823 |
| AspS9I | GGNCC | 2 cut(s) | 75, 76 |
| AsuHPI | GGTGA | 3 cut(s) | 139, 310, 505 |
| AvaI | CYCGRG | 1 cut(s) | 618 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BanII | GRGCYC | 2 cut(s) | 79, 625 |
| BbrPI | CACGTG | 1 cut(s) | 546 |
| Bbv12I | GWGCWC | 1 cut(s) | 625 |
| BccI | CCATC | 1 cut(s) | 124 |
| BclI | TGATCA | 2 cut(s) | 9, 495 |
| BcoDI | GTCTC | 4 cut(s) | 101, 374, 680, 712 |
| BfaI | CTAG | 1 cut(s) | 531 |
| BfmI | CTRYAG | 1 cut(s) | 166 |
| BfoI | RGCGCY | 1 cut(s) | 362 |
| BfrI | CTTAAG | 1 cut(s) | 59 |
| BfuAI | ACCTGC | 3 cut(s) | 115, 286, 834 |
| BisI | GCNGC | 1 cut(s) | 603 |
| BlsI | GCNGC | 1 cut(s) | 604 |
| BmeT110I | CYCGRG | 1 cut(s) | 618 |
| BmgT120I | GGNCC | 2 cut(s) | 75, 76 |
| BmiI | GGNNCC | 2 cut(s) | 38, 77 |
| BmrI | ACTGGG | 3 cut(s) | 161, 195, 318 |
| BmsI | GCATC | 1 cut(s) | 238 |
| BmuI | ACTGGG | 3 cut(s) | 161, 195, 318 |
| BpmI | CTGGAG | 1 cut(s) | 354 |
| BsaAI | YACGTR | 1 cut(s) | 546 |
| BsaHI | GRCGYC | 2 cut(s) | 343, 367 |
| BsaWI | WCCGGW | 2 cut(s) | 325, 535 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 743, 773 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 332, 640 |
| Bse1I | ACTGG | 6 cut(s) | 156, 190, 313, 337, 579, 694 |
| BseAI | TCCGGA | 1 cut(s) | 325 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 332, 640 |
| BseNI | ACTGG | 6 cut(s) | 156, 190, 313, 337, 579, 694 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| Bsh1236I | CGCG | 2 cut(s) | 27, 823 |
| BshFI | GGCC | 2 cut(s) | 77, 602 |
| BsiHKAI | GWGCWC | 1 cut(s) | 625 |
| BsiHKCI | CYCGRG | 1 cut(s) | 618 |
| BsiSI | CCGG | 2 cut(s) | 326, 536 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 332, 640 |
| BsmAI | GTCTC | 4 cut(s) | 101, 374, 680, 712 |
| BsmBI | CGTCTC | 2 cut(s) | 374, 712 |
| BsnI | GGCC | 2 cut(s) | 77, 602 |
| BsoBI | CYCGRG | 1 cut(s) | 618 |
| Bsp120I | GGGCCC | 1 cut(s) | 75 |
| Bsp1286I | GDGCHC | 2 cut(s) | 79, 625 |
| Bsp13I | TCCGGA | 1 cut(s) | 325 |
| Bsp143I | GATC | 5 cut(s) | 9, 82, 423, 495, 577 |
| BspACI | CCGC | 1 cut(s) | 603 |
| BspANI | GGCC | 2 cut(s) | 77, 602 |
| BspEI | TCCGGA | 1 cut(s) | 325 |
| BspFNI | CGCG | 2 cut(s) | 27, 823 |
| BspHI | TCATGA | 1 cut(s) | 625 |
| BspLI | GGNNCC | 2 cut(s) | 38, 77 |
| BspMI | ACCTGC | 3 cut(s) | 115, 286, 834 |
| BspPI | GGATC | 3 cut(s) | 77, 418, 585 |
| BspTI | CTTAAG | 1 cut(s) | 59 |
| BsrI | ACTGG | 6 cut(s) | 156, 190, 313, 337, 579, 694 |
| BssMI | GATC | 5 cut(s) | 9, 82, 423, 495, 577 |
| BssNI | GRCGYC | 2 cut(s) | 343, 367 |
| Bst4CI | ACNGT | 1 cut(s) | 167 |
| Bst6I | CTCTTC | 1 cut(s) | 678 |
| BstACI | GRCGYC | 2 cut(s) | 343, 367 |
| BstAFI | CTTAAG | 1 cut(s) | 59 |
| BstBAI | YACGTR | 1 cut(s) | 546 |
| BstC8I | GCNNGC | 2 cut(s) | 29, 293 |
| BstFNI | CGCG | 2 cut(s) | 27, 823 |
| BstH2I | RGCGCY | 1 cut(s) | 362 |
| BstHHI | GCGC | 3 cut(s) | 27, 361, 823 |
| BstKTI | GATC | 5 cut(s) | 12, 85, 426, 498, 580 |
| BstMAI | GTCTC | 4 cut(s) | 101, 374, 680, 712 |
| BstMBI | GATC | 5 cut(s) | 9, 82, 423, 495, 577 |
| BstSFI | CTRYAG | 1 cut(s) | 166 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstUI | CGCG | 2 cut(s) | 27, 823 |
| BstX2I | RGATCY | 2 cut(s) | 82, 423 |
| BstYI | RGATCY | 2 cut(s) | 82, 423 |
| BsuRI | GGCC | 2 cut(s) | 77, 602 |
| BveI | ACCTGC | 3 cut(s) | 115, 286, 834 |
| Cac8I | GCNNGC | 2 cut(s) | 29, 293 |
| CciI | TCATGA | 1 cut(s) | 625 |
| CfoI | GCGC | 3 cut(s) | 27, 361, 823 |
| Cfr13I | GGNCC | 2 cut(s) | 75, 76 |
| CseI | GACGC | 1 cut(s) | 332 |
| Csp6I | GTAC | 1 cut(s) | 563 |
| CviAII | CATG | 7 cut(s) | 351, 389, 396, 511, 566, 626, 635 |
| CviJI | RGCY | 9 cut(s) | 15, 31, 77, 173, 261, 278, 467, 602, 623 |
| CviKI_1 | RGCY | 9 cut(s) | 15, 31, 77, 173, 261, 278, 467, 602, 623 |
| CviQI | GTAC | 1 cut(s) | 563 |
| DpnI | GATC | 5 cut(s) | 11, 84, 425, 497, 579 |
| DpnII | GATC | 5 cut(s) | 9, 82, 423, 495, 577 |
| EaeI | YGGCCR | 1 cut(s) | 600 |
| Eam1104I | CTCTTC | 1 cut(s) | 678 |
| EarI | CTCTTC | 1 cut(s) | 678 |
| Ecl136II | GAGCTC | 1 cut(s) | 623 |
| Eco24I | GRGCYC | 2 cut(s) | 79, 625 |
| Eco47III | AGCGCT | 1 cut(s) | 360 |
| Eco53kI | GAGCTC | 1 cut(s) | 623 |
| Eco72I | CACGTG | 1 cut(s) | 546 |
| Eco88I | CYCGRG | 1 cut(s) | 618 |
| EcoICRI | GAGCTC | 1 cut(s) | 623 |
| EcoO109I | RGGNCCY | 1 cut(s) | 75 |
| EcoRI | GAATTC | 1 cut(s) | 524 |
| EcoT38I | GRGCYC | 2 cut(s) | 79, 625 |
| Esp3I | CGTCTC | 2 cut(s) | 374, 712 |
| FaeI | CATG | 7 cut(s) | 354, 392, 399, 514, 569, 629, 638 |
| FatI | CATG | 7 cut(s) | 350, 388, 395, 510, 565, 625, 634 |
| FbaI | TGATCA | 2 cut(s) | 9, 495 |
| FblI | GTMKAC | 1 cut(s) | 694 |
| Fnu4HI | GCNGC | 1 cut(s) | 603 |
| FriOI | GRGCYC | 2 cut(s) | 79, 625 |
| Fsp4HI | GCNGC | 1 cut(s) | 603 |
| FspBI | CTAG | 1 cut(s) | 531 |
| GlaI | GCGC | 3 cut(s) | 26, 360, 822 |
| GluI | GCNGC | 1 cut(s) | 603 |
| GsuI | CTGGAG | 1 cut(s) | 354 |
| HaeII | RGCGCY | 1 cut(s) | 362 |
| HaeIII | GGCC | 2 cut(s) | 77, 602 |
| HapII | CCGG | 2 cut(s) | 326, 536 |
| HgaI | GACGC | 1 cut(s) | 332 |
| HhaI | GCGC | 3 cut(s) | 27, 361, 823 |
| Hin1I | GRCGYC | 2 cut(s) | 343, 367 |
| Hin1II | CATG | 7 cut(s) | 354, 392, 399, 514, 569, 629, 638 |
| Hin6I | GCGC | 3 cut(s) | 25, 359, 821 |
| HinP1I | GCGC | 3 cut(s) | 25, 359, 821 |
| HinfI | GANTC | 2 cut(s) | 4, 790 |
| HpaII | CCGG | 2 cut(s) | 326, 536 |
| HphI | GGTGA | 3 cut(s) | 139, 310, 505 |
| Hpy166II | GTNNAC | 5 cut(s) | 45, 149, 543, 695, 805 |
| Hpy188I | TCNGA | 3 cut(s) | 9, 282, 365 |
| Hpy188III | TCNNGA | 3 cut(s) | 86, 326, 626 |
| Hpy8I | GTNNAC | 5 cut(s) | 45, 149, 543, 695, 805 |
| Hpy99I | CGWCG | 1 cut(s) | 369 |
| HpyAV | CCTTC | 3 cut(s) | 214, 281, 769 |
| HpyCH4III | ACNGT | 1 cut(s) | 167 |
| HpyCH4IV | ACGT | 3 cut(s) | 367, 545, 721 |
| HpyCH4V | TGCA | 3 cut(s) | 395, 514, 843 |
| HpySE526I | ACGT | 3 cut(s) | 367, 545, 721 |
| Hsp92I | GRCGYC | 2 cut(s) | 343, 367 |
| Hsp92II | CATG | 7 cut(s) | 354, 392, 399, 514, 569, 629, 638 |
| HspAI | GCGC | 3 cut(s) | 25, 359, 821 |
| Kpn2I | TCCGGA | 1 cut(s) | 325 |
| Ksp22I | TGATCA | 2 cut(s) | 9, 495 |
| Kzo9I | GATC | 5 cut(s) | 9, 82, 423, 495, 577 |
| LmnI | GCTCC | 4 cut(s) | 190, 366, 647, 751 |
| LweI | GCATC | 1 cut(s) | 238 |
| MaeI | CTAG | 1 cut(s) | 531 |
| MaeII | ACGT | 3 cut(s) | 367, 545, 721 |
| MaeIII | GTNAC | 2 cut(s) | 551, 653 |
| MalI | GATC | 5 cut(s) | 11, 84, 425, 497, 579 |
| MboI | GATC | 5 cut(s) | 9, 82, 423, 495, 577 |
| MboII | GAAGA | 3 cut(s) | 127, 130, 695 |
| MflI | RGATCY | 2 cut(s) | 82, 423 |
| MhlI | GDGCHC | 2 cut(s) | 79, 625 |
| MluCI | AATT | 4 cut(s) | 65, 243, 524, 858 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| MmeI | TCCRAC | 1 cut(s) | 388 |
| MroI | TCCGGA | 1 cut(s) | 325 |
| MseI | TTAA | 4 cut(s) | 60, 71, 429, 747 |
| MslI | CAYNNNNRTG | 2 cut(s) | 269, 491 |
| MspA1I | CMGCKG | 3 cut(s) | 15, 467, 605 |
| MspCI | CTTAAG | 1 cut(s) | 59 |
| MspI | CCGG | 2 cut(s) | 326, 536 |
| MvnI | CGCG | 2 cut(s) | 27, 823 |
| NdeII | GATC | 5 cut(s) | 9, 82, 423, 495, 577 |
| NlaIII | CATG | 7 cut(s) | 354, 392, 399, 514, 569, 629, 638 |
| NlaIV | GGNNCC | 2 cut(s) | 38, 77 |
| NmuCI | GTSAC | 1 cut(s) | 653 |
| PaeR7I | CTCGAG | 1 cut(s) | 618 |
| PagI | TCATGA | 1 cut(s) | 625 |
| PaqCI | CACCTGC | 2 cut(s) | 115, 286 |
| PfeI | GAWTC | 1 cut(s) | 790 |
| PkrI | GCNGC | 1 cut(s) | 604 |
| PleI | GAGTC | 1 cut(s) | 12 |
| PmaCI | CACGTG | 1 cut(s) | 546 |
| PmlI | CACGTG | 1 cut(s) | 546 |
| PpsI | GAGTC | 1 cut(s) | 12 |
| Ppu21I | YACGTR | 1 cut(s) | 546 |
| Psp124BI | GAGCTC | 1 cut(s) | 625 |
| PspCI | CACGTG | 1 cut(s) | 546 |
| PspN4I | GGNNCC | 2 cut(s) | 38, 77 |
| PspOMI | GGGCCC | 1 cut(s) | 75 |
| PspPI | GGNCC | 2 cut(s) | 75, 76 |
| PspXI | VCTCGAGB | 1 cut(s) | 618 |
| PsuI | RGATCY | 2 cut(s) | 82, 423 |
| PvuII | CAGCTG | 2 cut(s) | 15, 467 |
| RsaI | GTAC | 1 cut(s) | 564 |
| RsaNI | GTAC | 1 cut(s) | 563 |
| RseI | CAYNNNNRTG | 2 cut(s) | 269, 491 |
| SacI | GAGCTC | 1 cut(s) | 625 |
| SaqAI | TTAA | 4 cut(s) | 60, 71, 429, 747 |
| SatI | GCNGC | 1 cut(s) | 603 |
| Sau3AI | GATC | 5 cut(s) | 9, 82, 423, 495, 577 |
| Sau96I | GGNCC | 2 cut(s) | 75, 76 |
| SchI | GAGTC | 1 cut(s) | 13 |
| SduI | GDGCHC | 2 cut(s) | 79, 625 |
| SfaNI | GCATC | 1 cut(s) | 238 |
| SfcI | CTRYAG | 1 cut(s) | 166 |
| Sfr274I | CTCGAG | 1 cut(s) | 618 |
| SlaI | CTCGAG | 1 cut(s) | 618 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 269, 491 |
| SmlI | CTYRAG | 2 cut(s) | 59, 618 |
| SmoI | CTYRAG | 2 cut(s) | 59, 618 |
| Sse9I | AATT | 4 cut(s) | 65, 243, 524, 858 |
| SsiI | CCGC | 1 cut(s) | 603 |
| SspMI | CTAG | 1 cut(s) | 531 |
| SstI | GAGCTC | 1 cut(s) | 625 |
| TaaI | ACNGT | 1 cut(s) | 167 |
| TaiI | ACGT | 3 cut(s) | 370, 548, 724 |
| TaqI | TCGA | 1 cut(s) | 619 |
| TasI | AATT | 4 cut(s) | 65, 243, 524, 858 |
| TatI | WGTACW | 1 cut(s) | 562 |
| TauI | GCSGC | 1 cut(s) | 605 |
| TfiI | GAWTC | 1 cut(s) | 790 |
| Tru1I | TTAA | 4 cut(s) | 60, 71, 429, 747 |
| Tru9I | TTAA | 4 cut(s) | 60, 71, 429, 747 |
| TseFI | GTSAC | 1 cut(s) | 653 |
| Tsp45I | GTSAC | 1 cut(s) | 653 |
| TspDTI | ATGAA | 6 cut(s) | 245, 253, 339, 475, 582, 605 |
| TspGWI | ACGGA | 1 cut(s) | 570 |
| Vha464I | CTTAAG | 1 cut(s) | 59 |
| XapI | RAATTY | 2 cut(s) | 524, 858 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 517 |
| XhoI | CTCGAG | 1 cut(s) | 618 |
| XmiI | GTMKAC | 1 cut(s) | 694 |
| XspI | CTAG | 1 cut(s) | 531 |
| ZraI | GACGTC | 1 cut(s) | 368 |