ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 39 - 142 | 8.1e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 157 |
| AciI | CCGC | 1 cut(s) | 199 |
| AclWI | GGATC | 1 cut(s) | 236 |
| AcsI | RAATTY | 1 cut(s) | 303 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 164, 465 |
| AluBI | AGCT | 3 cut(s) | 61, 264, 434 |
| AluI | AGCT | 3 cut(s) | 61, 264, 434 |
| Alw26I | GTCTC | 2 cut(s) | 155, 361 |
| AlwI | GGATC | 1 cut(s) | 236 |
| Aor13HI | TCCGGA | 1 cut(s) | 157 |
| AoxI | GGCC | 1 cut(s) | 221 |
| ApeKI | GCWGC | 1 cut(s) | 431 |
| ApoI | RAATTY | 1 cut(s) | 303 |
| AseI | ATTAAT | 1 cut(s) | 54 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 111 |
| AspS9I | GGNCC | 4 cut(s) | 187, 221, 362, 386 |
| AsuHPI | GGTGA | 2 cut(s) | 251, 296 |
| AvaII | GGWCC | 3 cut(s) | 187, 362, 386 |
| BbsI | GAAGAC | 1 cut(s) | 75 |
| BbvI | GCAGC | 1 cut(s) | 443 |
| BceAI | ACGGC | 2 cut(s) | 208, 212 |
| BclI | TGATCA | 1 cut(s) | 16 |
| BcoDI | GTCTC | 2 cut(s) | 155, 361 |
| BfmI | CTRYAG | 1 cut(s) | 341 |
| BisI | GCNGC | 1 cut(s) | 432 |
| BlsI | GCNGC | 1 cut(s) | 433 |
| Bme18I | GGWCC | 3 cut(s) | 187, 362, 386 |
| BmgT120I | GGNCC | 4 cut(s) | 187, 221, 362, 386 |
| BmiI | GGNNCC | 1 cut(s) | 188 |
| BmsI | GCATC | 2 cut(s) | 286, 457 |
| BpiI | GAAGAC | 1 cut(s) | 75 |
| BsaI | GGTCTC | 1 cut(s) | 361 |
| BsaJI | CCNNGG | 1 cut(s) | 224 |
| BsaWI | WCCGGW | 1 cut(s) | 157 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 164, 465 |
| Bse1I | ACTGG | 1 cut(s) | 145 |
| BseAI | TCCGGA | 1 cut(s) | 157 |
| BseDI | CCNNGG | 1 cut(s) | 224 |
| BseGI | GGATG | 1 cut(s) | 301 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 164, 465 |
| BseMII | CTCAG | 2 cut(s) | 161, 279 |
| BseNI | ACTGG | 1 cut(s) | 145 |
| BseXI | GCAGC | 1 cut(s) | 443 |
| BshFI | GGCC | 1 cut(s) | 223 |
| BsiSI | CCGG | 1 cut(s) | 158 |
| BslFI | GGGAC | 1 cut(s) | 200 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 164, 465 |
| BsmAI | GTCTC | 2 cut(s) | 155, 361 |
| BsmFI | GGGAC | 1 cut(s) | 200 |
| BsnI | GGCC | 1 cut(s) | 223 |
| Bso31I | GGTCTC | 1 cut(s) | 361 |
| Bsp13I | TCCGGA | 1 cut(s) | 157 |
| Bsp143I | GATC | 4 cut(s) | 3, 16, 228, 290 |
| BspACI | CCGC | 1 cut(s) | 199 |
| BspANI | GGCC | 1 cut(s) | 223 |
| BspCNI | CTCAG | 2 cut(s) | 162, 278 |
| BspEI | TCCGGA | 1 cut(s) | 157 |
| BspLI | GGNNCC | 1 cut(s) | 188 |
| BspPI | GGATC | 1 cut(s) | 236 |
| BspTNI | GGTCTC | 1 cut(s) | 361 |
| BsrI | ACTGG | 1 cut(s) | 145 |
| BssECI | CCNNGG | 1 cut(s) | 224 |
| BssMI | GATC | 4 cut(s) | 3, 16, 228, 290 |
| Bst4CI | ACNGT | 1 cut(s) | 476 |
| BstDEI | CTNAG | 3 cut(s) | 170, 265, 435 |
| BstDSI | CCRYGG | 1 cut(s) | 224 |
| BstF5I | GGATG | 1 cut(s) | 301 |
| BstKTI | GATC | 4 cut(s) | 6, 19, 231, 293 |
| BstMAI | GTCTC | 2 cut(s) | 155, 361 |
| BstMBI | GATC | 4 cut(s) | 3, 16, 228, 290 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 67 |
| BstSFI | CTRYAG | 1 cut(s) | 341 |
| BstV1I | GCAGC | 1 cut(s) | 443 |
| BstV2I | GAAGAC | 1 cut(s) | 75 |
| BsuRI | GGCC | 1 cut(s) | 223 |
| BtgI | CCRYGG | 1 cut(s) | 224 |
| BtsCI | GGATG | 1 cut(s) | 301 |
| Cfr13I | GGNCC | 4 cut(s) | 187, 221, 362, 386 |
| CviAII | CATG | 1 cut(s) | 8 |
| CviJI | RGCY | 5 cut(s) | 61, 223, 264, 323, 434 |
| CviKI_1 | RGCY | 5 cut(s) | 61, 223, 264, 323, 434 |
| DdeI | CTNAG | 3 cut(s) | 170, 265, 435 |
| DpnI | GATC | 4 cut(s) | 5, 18, 230, 292 |
| DpnII | GATC | 4 cut(s) | 3, 16, 228, 290 |
| EciI | GGCGGA | 1 cut(s) | 214 |
| Eco31I | GGTCTC | 1 cut(s) | 361 |
| Eco47I | GGWCC | 3 cut(s) | 187, 362, 386 |
| EcoO109I | RGGNCCY | 2 cut(s) | 187, 386 |
| FaeI | CATG | 1 cut(s) | 11 |
| FaiI | YATR | 8 cut(s) | 9, 30, 45, 50, 96, 98, 117, 150 |
| FaqI | GGGAC | 1 cut(s) | 200 |
| FatI | CATG | 1 cut(s) | 7 |
| FbaI | TGATCA | 1 cut(s) | 16 |
| Fnu4HI | GCNGC | 1 cut(s) | 432 |
| FokI | GGATG | 1 cut(s) | 308 |
| Fsp4HI | GCNGC | 1 cut(s) | 432 |
| GluI | GCNGC | 1 cut(s) | 432 |
| HaeIII | GGCC | 1 cut(s) | 223 |
| HapII | CCGG | 1 cut(s) | 158 |
| Hin1II | CATG | 1 cut(s) | 11 |
| HinfI | GANTC | 2 cut(s) | 154, 402 |
| HpaII | CCGG | 1 cut(s) | 158 |
| HphI | GGTGA | 2 cut(s) | 251, 296 |
| Hpy166II | GTNNAC | 2 cut(s) | 338, 372 |
| Hpy188I | TCNGA | 6 cut(s) | 134, 171, 268, 295, 309, 453 |
| Hpy188III | TCNNGA | 2 cut(s) | 158, 317 |
| Hpy8I | GTNNAC | 2 cut(s) | 338, 372 |
| HpyAV | CCTTC | 1 cut(s) | 469 |
| HpyCH4III | ACNGT | 1 cut(s) | 476 |
| HpyCH4V | TGCA | 1 cut(s) | 299 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 67 |
| HpyF3I | CTNAG | 3 cut(s) | 170, 265, 435 |
| Hsp92II | CATG | 1 cut(s) | 11 |
| Kpn2I | TCCGGA | 1 cut(s) | 157 |
| Ksp22I | TGATCA | 1 cut(s) | 16 |
| Kzo9I | GATC | 4 cut(s) | 3, 16, 228, 290 |
| LmnI | GCTCC | 1 cut(s) | 397 |
| LpnPI | CCDG | 7 cut(s) | 47, 126, 150, 171, 203, 329, 345 |
| Lsp1109I | GCAGC | 1 cut(s) | 443 |
| LweI | GCATC | 2 cut(s) | 286, 457 |
| MaeIII | GTNAC | 3 cut(s) | 136, 192, 239 |
| MalI | GATC | 4 cut(s) | 5, 18, 230, 292 |
| MboI | GATC | 4 cut(s) | 3, 16, 228, 290 |
| MboII | GAAGA | 1 cut(s) | 75 |
| MluCI | AATT | 3 cut(s) | 251, 303, 421 |
| MlyI | GAGTC | 1 cut(s) | 396 |
| MmeI | TCCRAC | 1 cut(s) | 375 |
| MnlI | CCTC | 9 cut(s) | 84, 165, 201, 212, 313, 340, 346, 377, 421 |
| MroI | TCCGGA | 1 cut(s) | 157 |
| MroXI | GAANNNNTTC | 1 cut(s) | 111 |
| MseI | TTAA | 2 cut(s) | 54, 246 |
| MslI | CAYNNNNRTG | 1 cut(s) | 99 |
| MspA1I | CMGCKG | 1 cut(s) | 61 |
| MspI | CCGG | 1 cut(s) | 158 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 67 |
| NdeII | GATC | 4 cut(s) | 3, 16, 228, 290 |
| NlaIII | CATG | 1 cut(s) | 11 |
| NlaIV | GGNNCC | 1 cut(s) | 188 |
| NmuCI | GTSAC | 1 cut(s) | 239 |
| PdmI | GAANNNNTTC | 1 cut(s) | 111 |
| PfeI | GAWTC | 1 cut(s) | 154 |
| PkrI | GCNGC | 1 cut(s) | 433 |
| PleI | GAGTC | 1 cut(s) | 396 |
| PpsI | GAGTC | 1 cut(s) | 396 |
| PpuMI | RGGWCCY | 2 cut(s) | 187, 386 |
| PshBI | ATTAAT | 1 cut(s) | 54 |
| Psp5II | RGGWCCY | 2 cut(s) | 187, 386 |
| PspN4I | GGNNCC | 1 cut(s) | 188 |
| PspPI | GGNCC | 4 cut(s) | 187, 221, 362, 386 |
| PspPPI | RGGWCCY | 2 cut(s) | 187, 386 |
| PvuII | CAGCTG | 1 cut(s) | 61 |
| RseI | CAYNNNNRTG | 1 cut(s) | 99 |
| SaqAI | TTAA | 2 cut(s) | 54, 246 |
| SatI | GCNGC | 1 cut(s) | 432 |
| Sau3AI | GATC | 4 cut(s) | 3, 16, 228, 290 |
| Sau96I | GGNCC | 4 cut(s) | 187, 221, 362, 386 |
| SchI | GAGTC | 1 cut(s) | 396 |
| SfaNI | GCATC | 2 cut(s) | 286, 457 |
| SfcI | CTRYAG | 1 cut(s) | 341 |
| SinI | GGWCC | 3 cut(s) | 187, 362, 386 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 99 |
| Sse9I | AATT | 3 cut(s) | 251, 303, 421 |
| SsiI | CCGC | 1 cut(s) | 199 |
| TaaI | ACNGT | 1 cut(s) | 476 |
| TaqI | TCGA | 1 cut(s) | 405 |
| TasI | AATT | 3 cut(s) | 251, 303, 421 |
| TfiI | GAWTC | 1 cut(s) | 154 |
| Tru1I | TTAA | 2 cut(s) | 54, 246 |
| Tru9I | TTAA | 2 cut(s) | 54, 246 |
| TseFI | GTSAC | 1 cut(s) | 239 |
| TseI | GCWGC | 1 cut(s) | 431 |
| Tsp45I | GTSAC | 1 cut(s) | 239 |
| TspDTI | ATGAA | 4 cut(s) | 17, 104, 264, 406 |
| VpaK11BI | GGWCC | 3 cut(s) | 187, 362, 386 |
| VspI | ATTAAT | 1 cut(s) | 54 |
| XapI | RAATTY | 1 cut(s) | 303 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 372 |
| XmnI | GAANNNNTTC | 1 cut(s) | 111 |