ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 482 |
| AciI | CCGC | 3 cut(s) | 114, 228, 419 |
| AcsI | RAATTY | 1 cut(s) | 136 |
| AfaI | GTAC | 1 cut(s) | 12 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 120, 174, 482 |
| AgsI | TTSAA | 3 cut(s) | 39, 512, 554 |
| AjnI | CCWGG | 2 cut(s) | 594, 703 |
| AluBI | AGCT | 1 cut(s) | 426 |
| AluI | AGCT | 1 cut(s) | 426 |
| Alw26I | GTCTC | 1 cut(s) | 577 |
| AoxI | GGCC | 2 cut(s) | 63, 622 |
| ApoI | RAATTY | 1 cut(s) | 136 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 389 |
| AspLEI | GCGC | 1 cut(s) | 147 |
| AspS9I | GGNCC | 3 cut(s) | 63, 376, 433 |
| AsuHPI | GGTGA | 1 cut(s) | 469 |
| AvaII | GGWCC | 2 cut(s) | 376, 433 |
| AxyI | CCTNAGG | 1 cut(s) | 380 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 27 |
| BanII | GRGCYC | 1 cut(s) | 317 |
| BbsI | GAAGAC | 1 cut(s) | 247 |
| BccI | CCATC | 1 cut(s) | 403 |
| BceAI | ACGGC | 1 cut(s) | 609 |
| BciT130I | CCWGG | 2 cut(s) | 596, 705 |
| BcoDI | GTCTC | 1 cut(s) | 577 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 62 |
| BisI | GCNGC | 1 cut(s) | 419 |
| BlsI | GCNGC | 1 cut(s) | 420 |
| Bme1390I | CCNGG | 2 cut(s) | 596, 705 |
| Bme18I | GGWCC | 2 cut(s) | 376, 433 |
| BmgT120I | GGNCC | 3 cut(s) | 63, 376, 433 |
| BmiI | GGNNCC | 2 cut(s) | 64, 314 |
| BmrFI | CCNGG | 2 cut(s) | 596, 705 |
| BmrI | ACTGGG | 1 cut(s) | 492 |
| BmsI | GCATC | 6 cut(s) | 83, 97, 132, 164, 243, 496 |
| BmuI | ACTGGG | 1 cut(s) | 492 |
| BoxI | GACNNNNGTC | 1 cut(s) | 438 |
| BpiI | GAAGAC | 1 cut(s) | 247 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 451, 483 |
| BsaJI | CCNNGG | 1 cut(s) | 173 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 120, 174, 482 |
| Bse1I | ACTGG | 3 cut(s) | 14, 148, 487 |
| Bse21I | CCTNAGG | 1 cut(s) | 380 |
| BseBI | CCWGG | 2 cut(s) | 596, 705 |
| BseDI | CCNNGG | 1 cut(s) | 173 |
| BseGI | GGATG | 1 cut(s) | 155 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 120, 174, 482 |
| BseMII | CTCAG | 3 cut(s) | 122, 228, 567 |
| BseNI | ACTGG | 3 cut(s) | 14, 148, 487 |
| BshFI | GGCC | 2 cut(s) | 65, 624 |
| BslFI | GGGAC | 1 cut(s) | 218 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 120, 174, 482 |
| BsmAI | GTCTC | 1 cut(s) | 577 |
| BsmFI | GGGAC | 1 cut(s) | 218 |
| BsnI | GGCC | 2 cut(s) | 65, 624 |
| Bsp1286I | GDGCHC | 1 cut(s) | 317 |
| Bsp143I | GATC | 1 cut(s) | 355 |
| Bsp19I | CCATGG | 1 cut(s) | 173 |
| BspACI | CCGC | 3 cut(s) | 114, 228, 419 |
| BspANI | GGCC | 2 cut(s) | 65, 624 |
| BspCNI | CTCAG | 3 cut(s) | 121, 227, 568 |
| BspLI | GGNNCC | 2 cut(s) | 64, 314 |
| BspQI | GCTCTTC | 1 cut(s) | 433 |
| BsrI | ACTGG | 3 cut(s) | 14, 148, 487 |
| BssECI | CCNNGG | 1 cut(s) | 173 |
| BssMI | GATC | 1 cut(s) | 355 |
| BssT1I | CCWWGG | 1 cut(s) | 173 |
| Bst2UI | CCWGG | 2 cut(s) | 596, 705 |
| Bst4CI | ACNGT | 4 cut(s) | 373, 440, 516, 608 |
| Bst6I | CTCTTC | 1 cut(s) | 433 |
| BstDEI | CTNAG | 5 cut(s) | 108, 214, 380, 576, 693 |
| BstDSI | CCRYGG | 1 cut(s) | 173 |
| BstF5I | GGATG | 1 cut(s) | 155 |
| BstHHI | GCGC | 1 cut(s) | 147 |
| BstKTI | GATC | 1 cut(s) | 358 |
| BstMAI | GTCTC | 1 cut(s) | 577 |
| BstMBI | GATC | 1 cut(s) | 355 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 62, 71, 113, 600 |
| BstNI | CCWGG | 2 cut(s) | 596, 705 |
| BstNSI | RCATGY | 2 cut(s) | 47, 250 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 438 |
| BstSCI | CCNGG | 2 cut(s) | 594, 703 |
| BstV2I | GAAGAC | 1 cut(s) | 247 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 402 |
| Bsu36I | CCTNAGG | 1 cut(s) | 380 |
| BsuRI | GGCC | 2 cut(s) | 65, 624 |
| BtgI | CCRYGG | 1 cut(s) | 173 |
| BtsCI | GGATG | 1 cut(s) | 155 |
| BtsI | GCAGTG | 1 cut(s) | 572 |
| BtsIMutI | CAGTG | 1 cut(s) | 572 |
| CfoI | GCGC | 1 cut(s) | 147 |
| Cfr13I | GGNCC | 3 cut(s) | 63, 376, 433 |
| Csp6I | GTAC | 1 cut(s) | 11 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 27, 62 |
| CviAII | CATG | 7 cut(s) | 44, 125, 174, 247, 324, 402, 589 |
| CviJI | RGCY | 8 cut(s) | 56, 65, 178, 315, 426, 594, 624, 703 |
| CviKI_1 | RGCY | 8 cut(s) | 56, 65, 178, 315, 426, 594, 624, 703 |
| CviQI | GTAC | 1 cut(s) | 11 |
| DdeI | CTNAG | 5 cut(s) | 108, 214, 380, 576, 693 |
| DpnI | GATC | 1 cut(s) | 357 |
| DpnII | GATC | 1 cut(s) | 355 |
| Eam1104I | CTCTTC | 1 cut(s) | 433 |
| EarI | CTCTTC | 1 cut(s) | 433 |
| EciI | GGCGGA | 1 cut(s) | 243 |
| Eco130I | CCWWGG | 1 cut(s) | 173 |
| Eco24I | GRGCYC | 1 cut(s) | 317 |
| Eco47I | GGWCC | 2 cut(s) | 376, 433 |
| Eco81I | CCTNAGG | 1 cut(s) | 380 |
| EcoRII | CCWGG | 2 cut(s) | 594, 703 |
| EcoT14I | CCWWGG | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 1 cut(s) | 317 |
| ErhI | CCWWGG | 1 cut(s) | 173 |
| FaeI | CATG | 7 cut(s) | 47, 128, 177, 250, 327, 405, 592 |
| FaqI | GGGAC | 1 cut(s) | 218 |
| FatI | CATG | 7 cut(s) | 43, 124, 173, 246, 323, 401, 588 |
| Fnu4HI | GCNGC | 1 cut(s) | 419 |
| FokI | GGATG | 1 cut(s) | 142 |
| FriOI | GRGCYC | 1 cut(s) | 317 |
| Fsp4HI | GCNGC | 1 cut(s) | 419 |
| GlaI | GCGC | 1 cut(s) | 146 |
| GluI | GCNGC | 1 cut(s) | 419 |
| HaeIII | GGCC | 2 cut(s) | 65, 624 |
| HhaI | GCGC | 1 cut(s) | 147 |
| Hin1II | CATG | 7 cut(s) | 47, 128, 177, 250, 327, 405, 592 |
| Hin6I | GCGC | 1 cut(s) | 145 |
| HinP1I | GCGC | 1 cut(s) | 145 |
| HincII | GTYRAC | 1 cut(s) | 208 |
| HindII | GTYRAC | 1 cut(s) | 208 |
| HinfI | GANTC | 4 cut(s) | 231, 385, 550, 583 |
| HpaI | GTTAAC | 1 cut(s) | 208 |
| HphI | GGTGA | 1 cut(s) | 469 |
| Hpy166II | GTNNAC | 4 cut(s) | 49, 208, 376, 629 |
| Hpy188I | TCNGA | 8 cut(s) | 79, 111, 217, 331, 339, 360, 433, 577 |
| Hpy188III | TCNNGA | 1 cut(s) | 533 |
| Hpy8I | GTNNAC | 4 cut(s) | 49, 208, 376, 629 |
| HpyAV | CCTTC | 3 cut(s) | 271, 337, 673 |
| HpyCH4III | ACNGT | 4 cut(s) | 373, 440, 516, 608 |
| HpyCH4IV | ACGT | 1 cut(s) | 51 |
| HpyCH4V | TGCA | 3 cut(s) | 250, 256, 643 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 62, 71, 113, 600 |
| HpyF3I | CTNAG | 5 cut(s) | 108, 214, 380, 576, 693 |
| HpySE526I | ACGT | 1 cut(s) | 51 |
| Hsp92II | CATG | 7 cut(s) | 47, 128, 177, 250, 327, 405, 592 |
| HspAI | GCGC | 1 cut(s) | 145 |
| KspAI | GTTAAC | 1 cut(s) | 208 |
| Kzo9I | GATC | 1 cut(s) | 355 |
| LguI | GCTCTTC | 1 cut(s) | 433 |
| LmnI | GCTCC | 2 cut(s) | 71, 312 |
| LweI | GCATC | 6 cut(s) | 83, 97, 132, 164, 243, 496 |
| MaeII | ACGT | 1 cut(s) | 51 |
| MaeIII | GTNAC | 2 cut(s) | 461, 523 |
| MalI | GATC | 1 cut(s) | 357 |
| MboI | GATC | 1 cut(s) | 355 |
| MboII | GAAGA | 4 cut(s) | 27, 252, 390, 420 |
| MfeI | CAATTG | 1 cut(s) | 497 |
| MhlI | GDGCHC | 1 cut(s) | 317 |
| MluCI | AATT | 4 cut(s) | 28, 136, 201, 497 |
| MlyI | GAGTC | 1 cut(s) | 240 |
| MnlI | CCTC | 7 cut(s) | 175, 246, 262, 448, 453, 551, 571 |
| MroXI | GAANNNNTTC | 1 cut(s) | 389 |
| MseI | TTAA | 3 cut(s) | 195, 207, 612 |
| MslI | CAYNNNNRTG | 2 cut(s) | 251, 400 |
| MspA1I | CMGCKG | 1 cut(s) | 116 |
| MspR9I | CCNGG | 2 cut(s) | 596, 705 |
| MunI | CAATTG | 1 cut(s) | 497 |
| MvaI | CCWGG | 2 cut(s) | 596, 705 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 62, 71, 113, 600 |
| NcoI | CCATGG | 1 cut(s) | 173 |
| NdeII | GATC | 1 cut(s) | 355 |
| NlaIII | CATG | 7 cut(s) | 47, 128, 177, 250, 327, 405, 592 |
| NlaIV | GGNNCC | 2 cut(s) | 64, 314 |
| NmuCI | GTSAC | 1 cut(s) | 461 |
| NspI | RCATGY | 2 cut(s) | 47, 250 |
| PciSI | GCTCTTC | 1 cut(s) | 433 |
| PdmI | GAANNNNTTC | 1 cut(s) | 389 |
| PfeI | GAWTC | 3 cut(s) | 385, 550, 583 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 482 |
| PkrI | GCNGC | 1 cut(s) | 420 |
| PleI | GAGTC | 1 cut(s) | 239 |
| PpsI | GAGTC | 1 cut(s) | 239 |
| PshAI | GACNNNNGTC | 1 cut(s) | 438 |
| Psp6I | CCWGG | 2 cut(s) | 594, 703 |
| PspGI | CCWGG | 2 cut(s) | 594, 703 |
| PspN4I | GGNNCC | 2 cut(s) | 64, 314 |
| PspPI | GGNCC | 3 cut(s) | 63, 376, 433 |
| RsaI | GTAC | 1 cut(s) | 12 |
| RsaNI | GTAC | 1 cut(s) | 11 |
| RseI | CAYNNNNRTG | 2 cut(s) | 251, 400 |
| SapI | GCTCTTC | 1 cut(s) | 433 |
| SaqAI | TTAA | 3 cut(s) | 195, 207, 612 |
| SatI | GCNGC | 1 cut(s) | 419 |
| Sau3AI | GATC | 1 cut(s) | 355 |
| Sau96I | GGNCC | 3 cut(s) | 63, 376, 433 |
| SchI | GAGTC | 1 cut(s) | 240 |
| ScrFI | CCNGG | 2 cut(s) | 596, 705 |
| SduI | GDGCHC | 1 cut(s) | 317 |
| SfaNI | GCATC | 6 cut(s) | 83, 97, 132, 164, 243, 496 |
| SinI | GGWCC | 2 cut(s) | 376, 433 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 251, 400 |
| Sse9I | AATT | 4 cut(s) | 28, 136, 201, 497 |
| SsiI | CCGC | 3 cut(s) | 114, 228, 419 |
| StyD4I | CCNGG | 2 cut(s) | 594, 703 |
| StyI | CCWWGG | 1 cut(s) | 173 |
| TaaI | ACNGT | 4 cut(s) | 373, 440, 516, 608 |
| TaiI | ACGT | 1 cut(s) | 54 |
| TaqI | TCGA | 3 cut(s) | 238, 453, 490 |
| TaqII | GACCGA | 1 cut(s) | 20 |
| TasI | AATT | 4 cut(s) | 28, 136, 201, 497 |
| TauI | GCSGC | 1 cut(s) | 421 |
| TfiI | GAWTC | 3 cut(s) | 385, 550, 583 |
| Tru1I | TTAA | 3 cut(s) | 195, 207, 612 |
| Tru9I | TTAA | 3 cut(s) | 195, 207, 612 |
| TscAI | CASTG | 1 cut(s) | 572 |
| TseFI | GTSAC | 1 cut(s) | 461 |
| Tsp45I | GTSAC | 1 cut(s) | 461 |
| TspDTI | ATGAA | 4 cut(s) | 141, 290, 390, 692 |
| TspGWI | ACGGA | 1 cut(s) | 254 |
| TspRI | CASTG | 1 cut(s) | 572 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 2 cut(s) | 376, 433 |
| XapI | RAATTY | 1 cut(s) | 136 |
| XceI | RCATGY | 2 cut(s) | 47, 250 |
| XmnI | GAANNNNTTC | 1 cut(s) | 389 |