ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 425, 683 |
| AclI | AACGTT | 2 cut(s) | 323, 916 |
| AclWI | GGATC | 2 cut(s) | 693, 1008 |
| AcsI | RAATTY | 4 cut(s) | 337, 402, 660, 902 |
| AfaI | GTAC | 1 cut(s) | 1067 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 29, 236, 1075, 1142 |
| AgsI | TTSAA | 4 cut(s) | 103, 146, 184, 922 |
| AjnI | CCWGG | 1 cut(s) | 261 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 50, 82, 516, 548 |
| AluBI | AGCT | 4 cut(s) | 149, 557, 815, 1190 |
| AluI | AGCT | 4 cut(s) | 149, 557, 815, 1190 |
| Alw21I | GWGCWC | 3 cut(s) | 559, 817, 1192 |
| Alw26I | GTCTC | 1 cut(s) | 248 |
| AlwI | GGATC | 2 cut(s) | 693, 1008 |
| Ama87I | CYCGRG | 1 cut(s) | 969 |
| AoxI | GGCC | 1 cut(s) | 1155 |
| ApeKI | GCWGC | 2 cut(s) | 329, 1087 |
| ApoI | RAATTY | 4 cut(s) | 337, 402, 660, 902 |
| AseI | ATTAAT | 1 cut(s) | 153 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 18, 902 |
| AspLEI | GCGC | 1 cut(s) | 334 |
| AspS9I | GGNCC | 4 cut(s) | 539, 797, 878, 1156 |
| AsuC2I | CCSGG | 2 cut(s) | 381, 639 |
| AsuHPI | GGTGA | 4 cut(s) | 281, 627, 1157, 1184 |
| AvaI | CYCGRG | 1 cut(s) | 969 |
| AvaII | GGWCC | 3 cut(s) | 539, 797, 878 |
| BanII | GRGCYC | 3 cut(s) | 559, 817, 1192 |
| BauI | CACGAG | 1 cut(s) | 231 |
| BbsI | GAAGAC | 3 cut(s) | 230, 531, 789 |
| Bbv12I | GWGCWC | 3 cut(s) | 559, 817, 1192 |
| BbvI | GCAGC | 2 cut(s) | 341, 1074 |
| BccI | CCATC | 2 cut(s) | 1045, 1147 |
| BceAI | ACGGC | 3 cut(s) | 374, 438, 696 |
| BciT130I | CCWGG | 1 cut(s) | 263 |
| BclI | TGATCA | 2 cut(s) | 435, 693 |
| BcnI | CCSGG | 2 cut(s) | 381, 639 |
| BcoDI | GTCTC | 1 cut(s) | 248 |
| BfaI | CTAG | 4 cut(s) | 6, 93, 362, 1204 |
| BfoI | RGCGCY | 1 cut(s) | 335 |
| BisI | GCNGC | 2 cut(s) | 330, 1088 |
| BlsI | GCNGC | 2 cut(s) | 331, 1089 |
| Bme1390I | CCNGG | 3 cut(s) | 263, 381, 639 |
| Bme18I | GGWCC | 3 cut(s) | 539, 797, 878 |
| BmeT110I | CYCGRG | 1 cut(s) | 969 |
| BmgT120I | GGNCC | 4 cut(s) | 539, 797, 878, 1156 |
| BmiI | GGNNCC | 2 cut(s) | 540, 798 |
| BmrFI | CCNGG | 3 cut(s) | 263, 381, 639 |
| BmsI | GCATC | 3 cut(s) | 256, 1119, 1138 |
| BpiI | GAAGAC | 3 cut(s) | 230, 531, 789 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 211, 243 |
| BpmI | CTGGAG | 2 cut(s) | 516, 774 |
| Bpu10I | CCTNAGC | 2 cut(s) | 583, 841 |
| BpuEI | CTTGAG | 3 cut(s) | 212, 453, 711 |
| BpuMI | CCSGG | 2 cut(s) | 381, 639 |
| Bsa29I | ATCGAT | 2 cut(s) | 568, 826 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1005 |
| BsaI | GGTCTC | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 5 cut(s) | 261, 482, 545, 740, 803 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 29, 236, 1075, 1142 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1005 |
| BseBI | CCWGG | 1 cut(s) | 263 |
| BseCI | ATCGAT | 2 cut(s) | 568, 826 |
| BseDI | CCNNGG | 5 cut(s) | 261, 482, 545, 740, 803 |
| BseGI | GGATG | 4 cut(s) | 271, 1037, 1093, 1134 |
| BseJI | GATNNNNATC | 1 cut(s) | 1005 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 29, 236, 1075, 1142 |
| BseMII | CTCAG | 1 cut(s) | 980 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseRI | GAGGAG | 3 cut(s) | 534, 792, 1091 |
| BseXI | GCAGC | 2 cut(s) | 341, 1074 |
| BsgI | GTGCAG | 2 cut(s) | 571, 829 |
| BshFI | GGCC | 1 cut(s) | 1157 |
| BshVI | ATCGAT | 2 cut(s) | 568, 826 |
| BsiHKAI | GWGCWC | 3 cut(s) | 559, 817, 1192 |
| BsiHKCI | CYCGRG | 1 cut(s) | 969 |
| BsiSI | CCGG | 2 cut(s) | 380, 638 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 29, 236, 1075, 1142 |
| BsmAI | GTCTC | 1 cut(s) | 248 |
| BsnI | GGCC | 1 cut(s) | 1157 |
| Bso31I | GGTCTC | 1 cut(s) | 248 |
| BsoBI | CYCGRG | 1 cut(s) | 969 |
| Bsp1286I | GDGCHC | 3 cut(s) | 559, 817, 1192 |
| Bsp143I | GATC | 4 cut(s) | 435, 685, 693, 1000 |
| BspACI | CCGC | 2 cut(s) | 425, 683 |
| BspANI | GGCC | 1 cut(s) | 1157 |
| BspCNI | CTCAG | 1 cut(s) | 981 |
| BspDI | ATCGAT | 2 cut(s) | 568, 826 |
| BspLI | GGNNCC | 2 cut(s) | 540, 798 |
| BspPI | GGATC | 2 cut(s) | 693, 1008 |
| BspTNI | GGTCTC | 1 cut(s) | 248 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 5 cut(s) | 261, 482, 545, 740, 803 |
| BssMI | GATC | 4 cut(s) | 435, 685, 693, 1000 |
| BssSI | CACGAG | 1 cut(s) | 231 |
| BssT1I | CCWWGG | 2 cut(s) | 482, 740 |
| Bst2BI | CACGAG | 1 cut(s) | 231 |
| Bst2UI | CCWGG | 1 cut(s) | 263 |
| Bst4CI | ACNGT | 3 cut(s) | 668, 1065, 1070 |
| BstC8I | GCNNGC | 4 cut(s) | 377, 579, 837, 931 |
| BstDEI | CTNAG | 5 cut(s) | 520, 583, 778, 841, 989 |
| BstF5I | GGATG | 4 cut(s) | 271, 1037, 1093, 1134 |
| BstH2I | RGCGCY | 1 cut(s) | 335 |
| BstHHI | GCGC | 1 cut(s) | 334 |
| BstKTI | GATC | 4 cut(s) | 438, 688, 696, 1003 |
| BstMAI | GTCTC | 1 cut(s) | 248 |
| BstMBI | GATC | 4 cut(s) | 435, 685, 693, 1000 |
| BstNI | CCWGG | 1 cut(s) | 263 |
| BstNSI | RCATGY | 3 cut(s) | 40, 839, 933 |
| BstSCI | CCNGG | 3 cut(s) | 261, 379, 637 |
| BstV1I | GCAGC | 2 cut(s) | 341, 1074 |
| BstV2I | GAAGAC | 3 cut(s) | 230, 531, 789 |
| Bsu15I | ATCGAT | 2 cut(s) | 568, 826 |
| BsuRI | GGCC | 1 cut(s) | 1157 |
| BsuTUI | ATCGAT | 2 cut(s) | 568, 826 |
| BtgZI | GCGATG | 1 cut(s) | 1166 |
| BtsCI | GGATG | 4 cut(s) | 271, 1037, 1093, 1134 |
| BtsI | GCAGTG | 1 cut(s) | 174 |
| BtsIMutI | CAGTG | 2 cut(s) | 174, 221 |
| Cac8I | GCNNGC | 4 cut(s) | 377, 579, 837, 931 |
| CfoI | GCGC | 1 cut(s) | 334 |
| Cfr13I | GGNCC | 4 cut(s) | 539, 797, 878, 1156 |
| ClaI | ATCGAT | 2 cut(s) | 568, 826 |
| Csp6I | GTAC | 1 cut(s) | 1066 |
| CviAII | CATG | 3 cut(s) | 37, 836, 930 |
| CviQI | GTAC | 1 cut(s) | 1066 |
| DdeI | CTNAG | 5 cut(s) | 520, 583, 778, 841, 989 |
| DpnI | GATC | 4 cut(s) | 437, 687, 695, 1002 |
| DpnII | GATC | 4 cut(s) | 435, 685, 693, 1000 |
| EciI | GGCGGA | 2 cut(s) | 440, 698 |
| Ecl136II | GAGCTC | 3 cut(s) | 557, 815, 1190 |
| Eco130I | CCWWGG | 2 cut(s) | 482, 740 |
| Eco24I | GRGCYC | 3 cut(s) | 559, 817, 1192 |
| Eco31I | GGTCTC | 1 cut(s) | 248 |
| Eco47I | GGWCC | 3 cut(s) | 539, 797, 878 |
| Eco53kI | GAGCTC | 3 cut(s) | 557, 815, 1190 |
| Eco88I | CYCGRG | 1 cut(s) | 969 |
| EcoICRI | GAGCTC | 3 cut(s) | 557, 815, 1190 |
| EcoO109I | RGGNCCY | 2 cut(s) | 539, 797 |
| EcoRII | CCWGG | 1 cut(s) | 261 |
| EcoT14I | CCWWGG | 2 cut(s) | 482, 740 |
| EcoT38I | GRGCYC | 3 cut(s) | 559, 817, 1192 |
| ErhI | CCWWGG | 2 cut(s) | 482, 740 |
| FaeI | CATG | 3 cut(s) | 40, 839, 933 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 462, 494, 720, 752 |
| FatI | CATG | 3 cut(s) | 36, 835, 929 |
| FauNDI | CATATG | 2 cut(s) | 561, 819 |
| FbaI | TGATCA | 2 cut(s) | 435, 693 |
| Fnu4HI | GCNGC | 2 cut(s) | 330, 1088 |
| FokI | GGATG | 4 cut(s) | 278, 1024, 1080, 1141 |
| FriOI | GRGCYC | 3 cut(s) | 559, 817, 1192 |
| Fsp4HI | GCNGC | 2 cut(s) | 330, 1088 |
| FspBI | CTAG | 4 cut(s) | 6, 93, 362, 1204 |
| GlaI | GCGC | 1 cut(s) | 333 |
| GluI | GCNGC | 2 cut(s) | 330, 1088 |
| GsuI | CTGGAG | 2 cut(s) | 516, 774 |
| HaeII | RGCGCY | 1 cut(s) | 335 |
| HaeIII | GGCC | 1 cut(s) | 1157 |
| HapII | CCGG | 2 cut(s) | 380, 638 |
| HhaI | GCGC | 1 cut(s) | 334 |
| Hin1II | CATG | 3 cut(s) | 40, 839, 933 |
| Hin6I | GCGC | 1 cut(s) | 332 |
| HinP1I | GCGC | 1 cut(s) | 332 |
| HincII | GTYRAC | 1 cut(s) | 1027 |
| HindII | GTYRAC | 1 cut(s) | 1027 |
| HinfI | GANTC | 7 cut(s) | 86, 211, 226, 283, 565, 823, 952 |
| HpaI | GTTAAC | 1 cut(s) | 1027 |
| HpaII | CCGG | 2 cut(s) | 380, 638 |
| HphI | GGTGA | 4 cut(s) | 281, 627, 1157, 1184 |
| Hpy166II | GTNNAC | 1 cut(s) | 1027 |
| Hpy188I | TCNGA | 5 cut(s) | 319, 356, 650, 990, 1047 |
| Hpy188III | TCNNGA | 4 cut(s) | 158, 256, 969, 1097 |
| Hpy8I | GTNNAC | 1 cut(s) | 1027 |
| HpyAV | CCTTC | 2 cut(s) | 8, 52 |
| HpyCH4III | ACNGT | 3 cut(s) | 668, 1065, 1070 |
| HpyCH4IV | ACGT | 2 cut(s) | 323, 916 |
| HpyCH4V | TGCA | 5 cut(s) | 74, 552, 810, 933, 1090 |
| HpyF3I | CTNAG | 5 cut(s) | 520, 583, 778, 841, 989 |
| HpySE526I | ACGT | 2 cut(s) | 323, 916 |
| Hsp92II | CATG | 3 cut(s) | 40, 839, 933 |
| HspAI | GCGC | 1 cut(s) | 332 |
| Ksp22I | TGATCA | 2 cut(s) | 435, 693 |
| KspAI | GTTAAC | 1 cut(s) | 1027 |
| Kzo9I | GATC | 4 cut(s) | 435, 685, 693, 1000 |
| LmnI | GCTCC | 1 cut(s) | 1187 |
| Lsp1109I | GCAGC | 2 cut(s) | 341, 1074 |
| LweI | GCATC | 3 cut(s) | 256, 1119, 1138 |
| MaeI | CTAG | 4 cut(s) | 6, 93, 362, 1204 |
| MaeII | ACGT | 2 cut(s) | 323, 916 |
| MaeIII | GTNAC | 3 cut(s) | 32, 287, 676 |
| MalI | GATC | 4 cut(s) | 437, 687, 695, 1002 |
| MboI | GATC | 4 cut(s) | 435, 685, 693, 1000 |
| MboII | GAAGA | 8 cut(s) | 188, 235, 470, 536, 728, 794, 961, 1183 |
| MfeI | CAATTG | 1 cut(s) | 122 |
| MhlI | GDGCHC | 3 cut(s) | 559, 817, 1192 |
| MluCI | AATT | 7 cut(s) | 75, 122, 179, 337, 402, 660, 902 |
| MlyI | GAGTC | 1 cut(s) | 220 |
| MmeI | TCCRAC | 1 cut(s) | 1106 |
| MroXI | GAANNNNTTC | 2 cut(s) | 18, 902 |
| MseI | TTAA | 5 cut(s) | 153, 504, 762, 1020, 1026 |
| MspI | CCGG | 2 cut(s) | 380, 638 |
| MspR9I | CCNGG | 3 cut(s) | 263, 381, 639 |
| MunI | CAATTG | 1 cut(s) | 122 |
| MvaI | CCWGG | 1 cut(s) | 263 |
| NciI | CCSGG | 2 cut(s) | 381, 639 |
| NdeI | CATATG | 2 cut(s) | 561, 819 |
| NdeII | GATC | 4 cut(s) | 435, 685, 693, 1000 |
| NlaIII | CATG | 3 cut(s) | 40, 839, 933 |
| NlaIV | GGNNCC | 2 cut(s) | 540, 798 |
| NmuCI | GTSAC | 1 cut(s) | 287 |
| NspI | RCATGY | 3 cut(s) | 40, 839, 933 |
| PaeI | GCATGC | 2 cut(s) | 839, 933 |
| PaeR7I | CTCGAG | 1 cut(s) | 969 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 922, 1148 |
| PdmI | GAANNNNTTC | 2 cut(s) | 18, 902 |
| PfeI | GAWTC | 6 cut(s) | 86, 211, 283, 565, 823, 952 |
| PkrI | GCNGC | 2 cut(s) | 331, 1089 |
| PleI | GAGTC | 1 cut(s) | 220 |
| PpsI | GAGTC | 1 cut(s) | 220 |
| PpuMI | RGGWCCY | 2 cut(s) | 539, 797 |
| PshBI | ATTAAT | 1 cut(s) | 153 |
| Psp124BI | GAGCTC | 3 cut(s) | 559, 817, 1192 |
| Psp1406I | AACGTT | 2 cut(s) | 323, 916 |
| Psp5II | RGGWCCY | 2 cut(s) | 539, 797 |
| Psp6I | CCWGG | 1 cut(s) | 261 |
| PspGI | CCWGG | 1 cut(s) | 261 |
| PspN4I | GGNNCC | 2 cut(s) | 540, 798 |
| PspPI | GGNCC | 4 cut(s) | 539, 797, 878, 1156 |
| PspPPI | RGGWCCY | 2 cut(s) | 539, 797 |
| RsaI | GTAC | 1 cut(s) | 1067 |
| RsaNI | GTAC | 1 cut(s) | 1066 |
| SacI | GAGCTC | 3 cut(s) | 559, 817, 1192 |
| SaqAI | TTAA | 5 cut(s) | 153, 504, 762, 1020, 1026 |
| SatI | GCNGC | 2 cut(s) | 330, 1088 |
| Sau3AI | GATC | 4 cut(s) | 435, 685, 693, 1000 |
| Sau96I | GGNCC | 4 cut(s) | 539, 797, 878, 1156 |
| SchI | GAGTC | 1 cut(s) | 220 |
| ScrFI | CCNGG | 3 cut(s) | 263, 381, 639 |
| SduI | GDGCHC | 3 cut(s) | 559, 817, 1192 |
| SfaNI | GCATC | 3 cut(s) | 256, 1119, 1138 |
| Sfr274I | CTCGAG | 1 cut(s) | 969 |
| SinI | GGWCC | 3 cut(s) | 539, 797, 878 |
| SlaI | CTCGAG | 1 cut(s) | 969 |
| SmlI | CTYRAG | 4 cut(s) | 191, 468, 726, 969 |
| SmoI | CTYRAG | 4 cut(s) | 191, 468, 726, 969 |
| SphI | GCATGC | 2 cut(s) | 839, 933 |
| Sse9I | AATT | 7 cut(s) | 75, 122, 179, 337, 402, 660, 902 |
| SsiI | CCGC | 2 cut(s) | 425, 683 |
| SspI | AATATT | 2 cut(s) | 448, 706 |
| SspMI | CTAG | 4 cut(s) | 6, 93, 362, 1204 |
| SstI | GAGCTC | 3 cut(s) | 559, 817, 1192 |
| StyD4I | CCNGG | 3 cut(s) | 261, 379, 637 |
| StyI | CCWWGG | 2 cut(s) | 482, 740 |
| TaaI | ACNGT | 3 cut(s) | 668, 1065, 1070 |
| TaiI | ACGT | 2 cut(s) | 326, 919 |
| TaqI | TCGA | 5 cut(s) | 568, 826, 883, 896, 970 |
| TaqII | GACCGA | 1 cut(s) | 866 |
| TasI | AATT | 7 cut(s) | 75, 122, 179, 337, 402, 660, 902 |
| TfiI | GAWTC | 6 cut(s) | 86, 211, 283, 565, 823, 952 |
| Tru1I | TTAA | 5 cut(s) | 153, 504, 762, 1020, 1026 |
| Tru9I | TTAA | 5 cut(s) | 153, 504, 762, 1020, 1026 |
| TscAI | CASTG | 2 cut(s) | 174, 221 |
| TseFI | GTSAC | 1 cut(s) | 287 |
| TseI | GCWGC | 2 cut(s) | 329, 1087 |
| Tsp45I | GTSAC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 3 cut(s) | 107, 578, 836 |
| TspRI | CASTG | 2 cut(s) | 174, 221 |
| VpaK11BI | GGWCC | 3 cut(s) | 539, 797, 878 |
| VspI | ATTAAT | 1 cut(s) | 153 |
| XapI | RAATTY | 4 cut(s) | 337, 402, 660, 902 |
| XceI | RCATGY | 3 cut(s) | 40, 839, 933 |
| XhoI | CTCGAG | 1 cut(s) | 969 |
| XmnI | GAANNNNTTC | 2 cut(s) | 18, 902 |
| XspI | CTAG | 4 cut(s) | 6, 93, 362, 1204 |