ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 94, 277 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 65 |
| AgsI | TTSAA | 2 cut(s) | 284, 290 |
| AjnI | CCWGG | 1 cut(s) | 80 |
| AluBI | AGCT | 3 cut(s) | 256, 263, 314 |
| AluI | AGCT | 3 cut(s) | 256, 263, 314 |
| Alw21I | GWGCWC | 1 cut(s) | 258 |
| ApeKI | GCWGC | 1 cut(s) | 26 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 119, 151 |
| AseI | ATTAAT | 1 cut(s) | 192 |
| AsuHPI | GGTGA | 2 cut(s) | 70, 113 |
| BanII | GRGCYC | 2 cut(s) | 48, 258 |
| Bbv12I | GWGCWC | 1 cut(s) | 258 |
| BbvI | GCAGC | 1 cut(s) | 38 |
| BccI | CCATC | 1 cut(s) | 192 |
| BceAI | ACGGC | 1 cut(s) | 43 |
| BciT130I | CCWGG | 1 cut(s) | 82 |
| BciVI | GTATCC | 1 cut(s) | 81 |
| BclI | TGATCA | 1 cut(s) | 205 |
| BfaI | CTAG | 1 cut(s) | 264 |
| BfuI | GTATCC | 1 cut(s) | 81 |
| BisI | GCNGC | 1 cut(s) | 27 |
| BlsI | GCNGC | 1 cut(s) | 28 |
| Bme1390I | CCNGG | 1 cut(s) | 82 |
| BmrFI | CCNGG | 1 cut(s) | 82 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 218, 250 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 65 |
| BseBI | CCWGG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 65 |
| BseMII | CTCAG | 1 cut(s) | 66 |
| BseRI | GAGGAG | 2 cut(s) | 40, 131 |
| BseXI | GCAGC | 1 cut(s) | 38 |
| BsiHKAI | GWGCWC | 1 cut(s) | 258 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 65 |
| Bsp1286I | GDGCHC | 2 cut(s) | 48, 258 |
| Bsp143I | GATC | 1 cut(s) | 205 |
| BspACI | CCGC | 2 cut(s) | 94, 277 |
| BspCNI | CTCAG | 1 cut(s) | 65 |
| BssMI | GATC | 1 cut(s) | 205 |
| Bst2UI | CCWGG | 1 cut(s) | 82 |
| Bst4CI | ACNGT | 1 cut(s) | 246 |
| Bst6I | CTCTTC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 1 cut(s) | 52 |
| BstKTI | GATC | 1 cut(s) | 208 |
| BstMBI | GATC | 1 cut(s) | 205 |
| BstNI | CCWGG | 1 cut(s) | 82 |
| BstSCI | CCNGG | 1 cut(s) | 80 |
| BstV1I | GCAGC | 1 cut(s) | 38 |
| BsuI | GTATCC | 1 cut(s) | 81 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 251 |
| CseI | GACGC | 1 cut(s) | 260 |
| CsiI | ACCWGGT | 1 cut(s) | 80 |
| CviJI | RGCY | 7 cut(s) | 46, 135, 256, 263, 301, 314, 326 |
| CviKI_1 | RGCY | 7 cut(s) | 46, 135, 256, 263, 301, 314, 326 |
| DdeI | CTNAG | 1 cut(s) | 52 |
| DpnI | GATC | 1 cut(s) | 207 |
| DpnII | GATC | 1 cut(s) | 205 |
| Eam1104I | CTCTTC | 1 cut(s) | 222 |
| EarI | CTCTTC | 1 cut(s) | 222 |
| Ecl136II | GAGCTC | 1 cut(s) | 256 |
| Eco24I | GRGCYC | 2 cut(s) | 48, 258 |
| Eco53kI | GAGCTC | 1 cut(s) | 256 |
| EcoICRI | GAGCTC | 1 cut(s) | 256 |
| EcoRII | CCWGG | 1 cut(s) | 80 |
| EcoT38I | GRGCYC | 2 cut(s) | 48, 258 |
| FaiI | YATR | 4 cut(s) | 42, 63, 155, 210 |
| FauI | CCCGC | 1 cut(s) | 87 |
| FbaI | TGATCA | 1 cut(s) | 205 |
| Fnu4HI | GCNGC | 1 cut(s) | 27 |
| FriOI | GRGCYC | 2 cut(s) | 48, 258 |
| Fsp4HI | GCNGC | 1 cut(s) | 27 |
| FspBI | CTAG | 1 cut(s) | 264 |
| GluI | GCNGC | 1 cut(s) | 27 |
| HgaI | GACGC | 1 cut(s) | 260 |
| HindIII | AAGCTT | 1 cut(s) | 312 |
| HinfI | GANTC | 1 cut(s) | 10 |
| HphI | GGTGA | 2 cut(s) | 70, 113 |
| Hpy166II | GTNNAC | 1 cut(s) | 232 |
| Hpy188I | TCNGA | 2 cut(s) | 9, 205 |
| Hpy8I | GTNNAC | 1 cut(s) | 232 |
| HpyCH4III | ACNGT | 1 cut(s) | 246 |
| HpyF3I | CTNAG | 1 cut(s) | 52 |
| Ksp22I | TGATCA | 1 cut(s) | 205 |
| Kzo9I | GATC | 1 cut(s) | 205 |
| LmnI | GCTCC | 1 cut(s) | 253 |
| LpnPI | CCDG | 3 cut(s) | 67, 94, 115 |
| Lsp1109I | GCAGC | 1 cut(s) | 38 |
| MabI | ACCWGGT | 1 cut(s) | 80 |
| MaeI | CTAG | 1 cut(s) | 264 |
| MalI | GATC | 1 cut(s) | 207 |
| MboI | GATC | 1 cut(s) | 205 |
| MboII | GAAGA | 1 cut(s) | 209 |
| MhlI | GDGCHC | 2 cut(s) | 48, 258 |
| MluCI | AATT | 1 cut(s) | 284 |
| MnlI | CCTC | 7 cut(s) | 28, 58, 61, 91, 109, 220, 225 |
| MseI | TTAA | 1 cut(s) | 192 |
| MspA1I | CMGCKG | 1 cut(s) | 277 |
| MspR9I | CCNGG | 1 cut(s) | 82 |
| MvaI | CCWGG | 1 cut(s) | 82 |
| NdeII | GATC | 1 cut(s) | 205 |
| PfeI | GAWTC | 1 cut(s) | 10 |
| PkrI | GCNGC | 1 cut(s) | 28 |
| PshBI | ATTAAT | 1 cut(s) | 192 |
| Psp124BI | GAGCTC | 1 cut(s) | 258 |
| Psp6I | CCWGG | 1 cut(s) | 80 |
| PspGI | CCWGG | 1 cut(s) | 80 |
| SacI | GAGCTC | 1 cut(s) | 258 |
| SaqAI | TTAA | 1 cut(s) | 192 |
| SatI | GCNGC | 1 cut(s) | 27 |
| Sau3AI | GATC | 1 cut(s) | 205 |
| ScrFI | CCNGG | 1 cut(s) | 82 |
| SduI | GDGCHC | 2 cut(s) | 48, 258 |
| SetI | ASST | 7 cut(s) | 83, 201, 217, 231, 258, 265, 316 |
| SexAI | ACCWGGT | 1 cut(s) | 80 |
| SgeI | CNNG | 8 cut(s) | 35, 93, 94, 107, 142, 276, 305, 327 |
| Sse9I | AATT | 1 cut(s) | 284 |
| SsiI | CCGC | 2 cut(s) | 94, 277 |
| SspI | AATATT | 1 cut(s) | 164 |
| SspMI | CTAG | 1 cut(s) | 264 |
| SstI | GAGCTC | 1 cut(s) | 258 |
| StyD4I | CCNGG | 1 cut(s) | 80 |
| TaaI | ACNGT | 1 cut(s) | 246 |
| TaqI | TCGA | 1 cut(s) | 86 |
| TasI | AATT | 1 cut(s) | 284 |
| TfiI | GAWTC | 1 cut(s) | 10 |
| Tru1I | TTAA | 1 cut(s) | 192 |
| Tru9I | TTAA | 1 cut(s) | 192 |
| TscAI | CASTG | 2 cut(s) | 60, 251 |
| TseI | GCWGC | 1 cut(s) | 26 |
| TspDTI | ATGAA | 1 cut(s) | 324 |
| TspRI | CASTG | 2 cut(s) | 60, 251 |
| VspI | ATTAAT | 1 cut(s) | 192 |
| XspI | CTAG | 1 cut(s) | 264 |