Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 643 |
| Acc36I | ACCTGC | 1 cut(s) | 130 |
| Acc65I | GGTACC | 1 cut(s) | 397 |
| AccB1I | GGYRCC | 1 cut(s) | 397 |
| AciI | CCGC | 2 cut(s) | 420, 456 |
| AcuI | CTGAAG | 2 cut(s) | 261, 391 |
| AfaI | GTAC | 1 cut(s) | 399 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 130, 394 |
| AflII | CTTAAG | 1 cut(s) | 71 |
| AflIII | ACRYGT | 1 cut(s) | 582 |
| AgeI | ACCGGT | 1 cut(s) | 394 |
| AgsI | TTSAA | 3 cut(s) | 149, 159, 488 |
| AjnI | CCWGG | 2 cut(s) | 327, 428 |
| AluBI | AGCT | 6 cut(s) | 70, 76, 109, 199, 292, 411 |
| AluI | AGCT | 6 cut(s) | 70, 76, 109, 199, 292, 411 |
| Alw21I | GWGCWC | 1 cut(s) | 468 |
| Ama87I | CYCGRG | 1 cut(s) | 549 |
| AoxI | GGCC | 2 cut(s) | 121, 532 |
| ApeKI | GCWGC | 2 cut(s) | 25, 611 |
| AsiGI | ACCGGT | 1 cut(s) | 394 |
| Asp718I | GGTACC | 1 cut(s) | 397 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 4 cut(s) | 25, 227, 365, 517 |
| AvaI | CYCGRG | 1 cut(s) | 549 |
| BanI | GGYRCC | 1 cut(s) | 397 |
| BbsI | GAAGAC | 1 cut(s) | 181 |
| Bbv12I | GWGCWC | 1 cut(s) | 468 |
| BbvI | GCAGC | 2 cut(s) | 37, 598 |
| BccI | CCATC | 1 cut(s) | 578 |
| BciT130I | CCWGG | 2 cut(s) | 329, 430 |
| BciVI | GTATCC | 1 cut(s) | 427 |
| BfaI | CTAG | 2 cut(s) | 33, 125 |
| BfrI | CTTAAG | 1 cut(s) | 71 |
| BfuAI | ACCTGC | 1 cut(s) | 130 |
| BfuI | GTATCC | 1 cut(s) | 427 |
| BisI | GCNGC | 3 cut(s) | 26, 420, 612 |
| BlsI | GCNGC | 3 cut(s) | 27, 421, 613 |
| Bme1390I | CCNGG | 2 cut(s) | 329, 430 |
| BmeT110I | CYCGRG | 1 cut(s) | 549 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmiI | GGNNCC | 1 cut(s) | 399 |
| BmrFI | CCNGG | 2 cut(s) | 329, 430 |
| BmsI | GCATC | 1 cut(s) | 142 |
| BpiI | GAAGAC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 3 cut(s) | 327, 428, 429 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 297, 327 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 130, 394 |
| Bse118I | RCCGGY | 2 cut(s) | 130, 394 |
| Bse1I | ACTGG | 1 cut(s) | 22 |
| BseBI | CCWGG | 2 cut(s) | 329, 430 |
| BseDI | CCNNGG | 3 cut(s) | 327, 428, 429 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 130, 394 |
| BseMII | CTCAG | 2 cut(s) | 68, 631 |
| BseNI | ACTGG | 1 cut(s) | 22 |
| BseXI | GCAGC | 2 cut(s) | 37, 598 |
| BsgI | GTGCAG | 1 cut(s) | 158 |
| BshFI | GGCC | 2 cut(s) | 123, 534 |
| BshNI | GGYRCC | 1 cut(s) | 397 |
| BshTI | ACCGGT | 1 cut(s) | 394 |
| BsiHKAI | GWGCWC | 1 cut(s) | 468 |
| BsiHKCI | CYCGRG | 1 cut(s) | 549 |
| BsiSI | CCGG | 3 cut(s) | 131, 395, 608 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 130, 394 |
| BsnI | GGCC | 2 cut(s) | 123, 534 |
| BsoBI | CYCGRG | 1 cut(s) | 549 |
| Bsp1286I | GDGCHC | 1 cut(s) | 468 |
| BspACI | CCGC | 2 cut(s) | 420, 456 |
| BspANI | GGCC | 2 cut(s) | 123, 534 |
| BspCNI | CTCAG | 2 cut(s) | 69, 630 |
| BspLI | GGNNCC | 1 cut(s) | 399 |
| BspMI | ACCTGC | 1 cut(s) | 130 |
| BspT107I | GGYRCC | 1 cut(s) | 397 |
| BspTI | CTTAAG | 1 cut(s) | 71 |
| BsrFI | RCCGGY | 2 cut(s) | 130, 394 |
| BsrI | ACTGG | 1 cut(s) | 22 |
| BssAI | RCCGGY | 2 cut(s) | 130, 394 |
| BssECI | CCNNGG | 3 cut(s) | 327, 428, 429 |
| Bst2UI | CCWGG | 2 cut(s) | 329, 430 |
| Bst4CI | ACNGT | 2 cut(s) | 13, 268 |
| Bst6I | CTCTTC | 1 cut(s) | 161 |
| BstAFI | CTTAAG | 1 cut(s) | 71 |
| BstC8I | GCNNGC | 3 cut(s) | 111, 424, 623 |
| BstDEI | CTNAG | 3 cut(s) | 77, 103, 617 |
| BstEII | GGTNACC | 1 cut(s) | 494 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 136, 575 |
| BstNI | CCWGG | 2 cut(s) | 329, 430 |
| BstNSI | RCATGY | 1 cut(s) | 426 |
| BstPI | GGTNACC | 1 cut(s) | 494 |
| BstSCI | CCNGG | 2 cut(s) | 327, 428 |
| BstV1I | GCAGC | 2 cut(s) | 37, 598 |
| BstV2I | GAAGAC | 1 cut(s) | 181 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 586 |
| BsuI | GTATCC | 1 cut(s) | 427 |
| BsuRI | GGCC | 2 cut(s) | 123, 534 |
| BtsI | GCAGTG | 1 cut(s) | 564 |
| BtsIMutI | CAGTG | 2 cut(s) | 273, 564 |
| BveI | ACCTGC | 1 cut(s) | 130 |
| Cac8I | GCNNGC | 3 cut(s) | 111, 424, 623 |
| Cfr10I | RCCGGY | 2 cut(s) | 130, 394 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| Csp6I | GTAC | 1 cut(s) | 398 |
| CspAI | ACCGGT | 1 cut(s) | 394 |
| CviAII | CATG | 3 cut(s) | 118, 348, 423 |
| CviQI | GTAC | 1 cut(s) | 398 |
| DdeI | CTNAG | 3 cut(s) | 77, 103, 617 |
| Eam1104I | CTCTTC | 1 cut(s) | 161 |
| EarI | CTCTTC | 1 cut(s) | 161 |
| Eco57I | CTGAAG | 2 cut(s) | 261, 391 |
| Eco88I | CYCGRG | 1 cut(s) | 549 |
| Eco91I | GGTNACC | 1 cut(s) | 494 |
| EcoO65I | GGTNACC | 1 cut(s) | 494 |
| EcoRII | CCWGG | 2 cut(s) | 327, 428 |
| FaeI | CATG | 3 cut(s) | 121, 351, 426 |
| FaiI | YATR | 8 cut(s) | 56, 119, 205, 233, 349, 424, 531, 643 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 86, 118 |
| FatI | CATG | 3 cut(s) | 117, 347, 422 |
| Fnu4HI | GCNGC | 3 cut(s) | 26, 420, 612 |
| Fsp4HI | GCNGC | 3 cut(s) | 26, 420, 612 |
| FspBI | CTAG | 2 cut(s) | 33, 125 |
| GluI | GCNGC | 3 cut(s) | 26, 420, 612 |
| HaeIII | GGCC | 2 cut(s) | 123, 534 |
| HapII | CCGG | 3 cut(s) | 131, 395, 608 |
| Hin1II | CATG | 3 cut(s) | 121, 351, 426 |
| HincII | GTYRAC | 1 cut(s) | 541 |
| HindII | GTYRAC | 1 cut(s) | 541 |
| HindIII | AAGCTT | 1 cut(s) | 68 |
| HpaII | CCGG | 3 cut(s) | 131, 395, 608 |
| HphI | GGTGA | 4 cut(s) | 25, 227, 365, 517 |
| Hpy166II | GTNNAC | 1 cut(s) | 541 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 470 |
| Hpy188III | TCNNGA | 1 cut(s) | 485 |
| Hpy8I | GTNNAC | 1 cut(s) | 541 |
| HpyAV | CCTTC | 1 cut(s) | 465 |
| HpyCH4III | ACNGT | 2 cut(s) | 13, 268 |
| HpyCH4IV | ACGT | 2 cut(s) | 462, 582 |
| HpyCH4V | TGCA | 2 cut(s) | 139, 564 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 136, 575 |
| HpyF3I | CTNAG | 3 cut(s) | 77, 103, 617 |
| HpySE526I | ACGT | 2 cut(s) | 462, 582 |
| Hsp92II | CATG | 3 cut(s) | 121, 351, 426 |
| KpnI | GGTACC | 1 cut(s) | 401 |
| LmnI | GCTCC | 5 cut(s) | 186, 204, 361, 416, 471 |
| Lsp1109I | GCAGC | 2 cut(s) | 37, 598 |
| LweI | GCATC | 1 cut(s) | 142 |
| MaeI | CTAG | 2 cut(s) | 33, 125 |
| MaeII | ACGT | 2 cut(s) | 462, 582 |
| MaeIII | GTNAC | 3 cut(s) | 13, 458, 494 |
| MboII | GAAGA | 5 cut(s) | 109, 161, 178, 186, 254 |
| MfeI | CAATTG | 1 cut(s) | 249 |
| MhlI | GDGCHC | 1 cut(s) | 468 |
| MluCI | AATT | 1 cut(s) | 249 |
| MnlI | CCTC | 5 cut(s) | 34, 40, 164, 510, 558 |
| MseI | TTAA | 4 cut(s) | 72, 309, 480, 630 |
| MspCI | CTTAAG | 1 cut(s) | 71 |
| MspI | CCGG | 3 cut(s) | 131, 395, 608 |
| MspR9I | CCNGG | 2 cut(s) | 329, 430 |
| MunI | CAATTG | 1 cut(s) | 249 |
| MvaI | CCWGG | 2 cut(s) | 329, 430 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 136, 575 |
| NlaIII | CATG | 3 cut(s) | 121, 351, 426 |
| NlaIV | GGNNCC | 1 cut(s) | 399 |
| NmuCI | GTSAC | 1 cut(s) | 13 |
| NspI | RCATGY | 1 cut(s) | 426 |
| PaeI | GCATGC | 1 cut(s) | 426 |
| PaeR7I | CTCGAG | 1 cut(s) | 549 |
| PasI | CCCWGGG | 1 cut(s) | 429 |
| PinAI | ACCGGT | 1 cut(s) | 394 |
| PkrI | GCNGC | 3 cut(s) | 27, 421, 613 |
| PsiI | TTATAA | 1 cut(s) | 643 |
| Psp6I | CCWGG | 2 cut(s) | 327, 428 |
| PspEI | GGTNACC | 1 cut(s) | 494 |
| PspGI | CCWGG | 2 cut(s) | 327, 428 |
| PspN4I | GGNNCC | 1 cut(s) | 399 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| PspXI | VCTCGAGB | 1 cut(s) | 549 |
| RsaI | GTAC | 1 cut(s) | 399 |
| RsaNI | GTAC | 1 cut(s) | 398 |
| SaqAI | TTAA | 4 cut(s) | 72, 309, 480, 630 |
| SatI | GCNGC | 3 cut(s) | 26, 420, 612 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 2 cut(s) | 329, 430 |
| SduI | GDGCHC | 1 cut(s) | 468 |
| SfaNI | GCATC | 1 cut(s) | 142 |
| Sfr274I | CTCGAG | 1 cut(s) | 549 |
| SlaI | CTCGAG | 1 cut(s) | 549 |
| SmlI | CTYRAG | 2 cut(s) | 71, 549 |
| SmoI | CTYRAG | 2 cut(s) | 71, 549 |
| SphI | GCATGC | 1 cut(s) | 426 |
| Sse9I | AATT | 1 cut(s) | 249 |
| SsiI | CCGC | 2 cut(s) | 420, 456 |
| SspMI | CTAG | 2 cut(s) | 33, 125 |
| StyD4I | CCNGG | 2 cut(s) | 327, 428 |
| TaaI | ACNGT | 2 cut(s) | 13, 268 |
| TaiI | ACGT | 2 cut(s) | 465, 585 |
| TaqI | TCGA | 1 cut(s) | 550 |
| TasI | AATT | 1 cut(s) | 249 |
| TauI | GCSGC | 1 cut(s) | 422 |
| Tru1I | TTAA | 4 cut(s) | 72, 309, 480, 630 |
| Tru9I | TTAA | 4 cut(s) | 72, 309, 480, 630 |
| TscAI | CASTG | 2 cut(s) | 273, 571 |
| TseFI | GTSAC | 1 cut(s) | 13 |
| TseI | GCWGC | 2 cut(s) | 25, 611 |
| Tsp45I | GTSAC | 1 cut(s) | 13 |
| TspDTI | ATGAA | 2 cut(s) | 248, 336 |
| TspGWI | ACGGA | 1 cut(s) | 270 |
| TspRI | CASTG | 2 cut(s) | 273, 571 |
| Vha464I | CTTAAG | 1 cut(s) | 71 |
| XceI | RCATGY | 1 cut(s) | 426 |
| XhoI | CTCGAG | 1 cut(s) | 549 |
| XspI | CTAG | 2 cut(s) | 33, 125 |