ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 26 - 191 | 1.5e-06 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 379 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 550 |
| AccII | CGCG | 2 cut(s) | 34, 459 |
| AciI | CCGC | 1 cut(s) | 367 |
| AclI | AACGTT | 1 cut(s) | 757 |
| AclWI | GGATC | 1 cut(s) | 351 |
| AcoI | YGGCCR | 1 cut(s) | 787 |
| AcsI | RAATTY | 3 cut(s) | 148, 437, 782 |
| AfaI | GTAC | 2 cut(s) | 795, 954 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 366, 526, 550, 652 |
| AflIII | ACRYGT | 1 cut(s) | 605 |
| AgsI | TTSAA | 1 cut(s) | 590 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 9 |
| AjiI | CACGTC | 1 cut(s) | 800 |
| AjnI | CCWGG | 1 cut(s) | 789 |
| AluBI | AGCT | 2 cut(s) | 347, 895 |
| AluI | AGCT | 2 cut(s) | 347, 895 |
| Alw26I | GTCTC | 3 cut(s) | 516, 835, 873 |
| AlwI | GGATC | 1 cut(s) | 351 |
| AoxI | GGCC | 4 cut(s) | 561, 787, 909, 944 |
| ApeKI | GCWGC | 1 cut(s) | 347 |
| ApoI | RAATTY | 3 cut(s) | 148, 437, 782 |
| AspA2I | CCTAGG | 1 cut(s) | 263 |
| AspS9I | GGNCC | 2 cut(s) | 287, 944 |
| AsuC2I | CCSGG | 1 cut(s) | 948 |
| AsuHPI | GGTGA | 2 cut(s) | 317, 565 |
| AvaII | GGWCC | 1 cut(s) | 287 |
| AvrII | CCTAGG | 1 cut(s) | 263 |
| BaeGI | GKGCMC | 1 cut(s) | 978 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 156, 189 |
| BalI | TGGCCA | 1 cut(s) | 789 |
| BanII | GRGCYC | 2 cut(s) | 600, 828 |
| BbsI | GAAGAC | 2 cut(s) | 28, 344 |
| BbvI | GCAGC | 1 cut(s) | 334 |
| BccI | CCATC | 3 cut(s) | 179, 552, 630 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 449, 483 |
| BciT130I | CCWGG | 1 cut(s) | 791 |
| BciVI | GTATCC | 1 cut(s) | 858 |
| BclI | TGATCA | 1 cut(s) | 568 |
| BcnI | CCSGG | 1 cut(s) | 948 |
| BcoDI | GTCTC | 3 cut(s) | 516, 835, 873 |
| BfaI | CTAG | 1 cut(s) | 264 |
| BfuAI | ACCTGC | 1 cut(s) | 379 |
| BfuI | GTATCC | 1 cut(s) | 858 |
| BglII | AGATCT | 1 cut(s) | 318 |
| BisI | GCNGC | 2 cut(s) | 348, 368 |
| BlnI | CCTAGG | 1 cut(s) | 263 |
| BlsI | GCNGC | 2 cut(s) | 349, 369 |
| Bme1390I | CCNGG | 2 cut(s) | 791, 948 |
| Bme18I | GGWCC | 1 cut(s) | 287 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 9 |
| BmgBI | CACGTC | 1 cut(s) | 800 |
| BmgT120I | GGNCC | 2 cut(s) | 287, 944 |
| BmrFI | CCNGG | 2 cut(s) | 791, 948 |
| BpiI | GAAGAC | 2 cut(s) | 28, 344 |
| BpuEI | CTTGAG | 1 cut(s) | 838 |
| BpuMI | CCSGG | 1 cut(s) | 948 |
| BsaJI | CCNNGG | 6 cut(s) | 65, 263, 290, 558, 906, 947 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 366, 526, 550, 652 |
| Bse1I | ACTGG | 2 cut(s) | 211, 433 |
| Bse3DI | GCAATG | 1 cut(s) | 571 |
| BseBI | CCWGG | 1 cut(s) | 791 |
| BseDI | CCNNGG | 6 cut(s) | 65, 263, 290, 558, 906, 947 |
| BseGI | GGATG | 3 cut(s) | 52, 76, 190 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 366, 526, 550, 652 |
| BseMI | GCAATG | 1 cut(s) | 571 |
| BseMII | CTCAG | 1 cut(s) | 239 |
| BseNI | ACTGG | 2 cut(s) | 211, 433 |
| BseRI | GAGGAG | 3 cut(s) | 413, 646, 738 |
| BseSI | GKGCMC | 1 cut(s) | 978 |
| BseXI | GCAGC | 1 cut(s) | 334 |
| Bsh1236I | CGCG | 2 cut(s) | 34, 459 |
| BshFI | GGCC | 4 cut(s) | 563, 789, 911, 946 |
| BsiSI | CCGG | 1 cut(s) | 947 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 366, 526, 550, 652 |
| BsmAI | GTCTC | 3 cut(s) | 516, 835, 873 |
| BsmI | GAATGC | 1 cut(s) | 246 |
| BsnI | GGCC | 4 cut(s) | 563, 789, 911, 946 |
| Bsp1286I | GDGCHC | 3 cut(s) | 600, 828, 978 |
| Bsp143I | GATC | 4 cut(s) | 318, 356, 490, 568 |
| Bsp19I | CCATGG | 2 cut(s) | 558, 906 |
| BspACI | CCGC | 1 cut(s) | 367 |
| BspANI | GGCC | 4 cut(s) | 563, 789, 911, 946 |
| BspCNI | CTCAG | 1 cut(s) | 238 |
| BspFNI | CGCG | 2 cut(s) | 34, 459 |
| BspMI | ACCTGC | 1 cut(s) | 379 |
| BspPI | GGATC | 1 cut(s) | 351 |
| BsrDI | GCAATG | 1 cut(s) | 571 |
| BsrI | ACTGG | 2 cut(s) | 211, 433 |
| BssECI | CCNNGG | 6 cut(s) | 65, 263, 290, 558, 906, 947 |
| BssMI | GATC | 4 cut(s) | 318, 356, 490, 568 |
| BssT1I | CCWWGG | 4 cut(s) | 65, 263, 558, 906 |
| Bst2UI | CCWGG | 1 cut(s) | 791 |
| Bst4CI | ACNGT | 3 cut(s) | 291, 846, 980 |
| Bst6I | CTCTTC | 3 cut(s) | 327, 669, 871 |
| BstDEI | CTNAG | 2 cut(s) | 225, 353 |
| BstDSI | CCRYGG | 3 cut(s) | 290, 558, 906 |
| BstEII | GGTNACC | 1 cut(s) | 553 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 650 |
| BstF5I | GGATG | 3 cut(s) | 52, 76, 190 |
| BstFNI | CGCG | 2 cut(s) | 34, 459 |
| BstKTI | GATC | 4 cut(s) | 321, 359, 493, 571 |
| BstMAI | GTCTC | 3 cut(s) | 516, 835, 873 |
| BstMBI | GATC | 4 cut(s) | 318, 356, 490, 568 |
| BstNI | CCWGG | 1 cut(s) | 791 |
| BstNSI | RCATGY | 1 cut(s) | 609 |
| BstPI | GGTNACC | 1 cut(s) | 553 |
| BstSCI | CCNGG | 2 cut(s) | 789, 946 |
| BstSLI | GKGCMC | 1 cut(s) | 978 |
| BstUI | CGCG | 2 cut(s) | 34, 459 |
| BstV1I | GCAGC | 1 cut(s) | 334 |
| BstV2I | GAAGAC | 2 cut(s) | 28, 344 |
| BstX2I | RGATCY | 2 cut(s) | 318, 356 |
| BstYI | RGATCY | 2 cut(s) | 318, 356 |
| BsuI | GTATCC | 1 cut(s) | 858 |
| BsuRI | GGCC | 4 cut(s) | 563, 789, 911, 946 |
| BtgI | CCRYGG | 3 cut(s) | 290, 558, 906 |
| BtrI | CACGTC | 1 cut(s) | 800 |
| BtsCI | GGATG | 3 cut(s) | 52, 76, 190 |
| BveI | ACCTGC | 1 cut(s) | 379 |
| Cfr13I | GGNCC | 2 cut(s) | 287, 944 |
| CseI | GACGC | 1 cut(s) | 465 |
| Csp6I | GTAC | 2 cut(s) | 794, 953 |
| CviAII | CATG | 7 cut(s) | 249, 275, 444, 559, 606, 883, 907 |
| CviQI | GTAC | 2 cut(s) | 794, 953 |
| DdeI | CTNAG | 2 cut(s) | 225, 353 |
| DpnI | GATC | 4 cut(s) | 320, 358, 492, 570 |
| DpnII | GATC | 4 cut(s) | 318, 356, 490, 568 |
| DraI | TTTAAA | 1 cut(s) | 762 |
| DriI | GACNNNNNGTC | 1 cut(s) | 9 |
| EaeI | YGGCCR | 1 cut(s) | 787 |
| Eam1104I | CTCTTC | 3 cut(s) | 327, 669, 871 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 9 |
| EarI | CTCTTC | 3 cut(s) | 327, 669, 871 |
| Eco130I | CCWWGG | 4 cut(s) | 65, 263, 558, 906 |
| Eco24I | GRGCYC | 2 cut(s) | 600, 828 |
| Eco47I | GGWCC | 1 cut(s) | 287 |
| Eco91I | GGTNACC | 1 cut(s) | 553 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 650 |
| EcoO65I | GGTNACC | 1 cut(s) | 553 |
| EcoRII | CCWGG | 1 cut(s) | 789 |
| EcoT14I | CCWWGG | 4 cut(s) | 65, 263, 558, 906 |
| EcoT38I | GRGCYC | 2 cut(s) | 600, 828 |
| ErhI | CCWWGG | 4 cut(s) | 65, 263, 558, 906 |
| FaeI | CATG | 7 cut(s) | 252, 278, 447, 562, 609, 886, 910 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 879, 911 |
| FatI | CATG | 7 cut(s) | 248, 274, 443, 558, 605, 882, 906 |
| FbaI | TGATCA | 1 cut(s) | 568 |
| Fnu4HI | GCNGC | 2 cut(s) | 348, 368 |
| FokI | GGATG | 3 cut(s) | 59, 83, 197 |
| FriOI | GRGCYC | 2 cut(s) | 600, 828 |
| Fsp4HI | GCNGC | 2 cut(s) | 348, 368 |
| FspBI | CTAG | 1 cut(s) | 264 |
| GluI | GCNGC | 2 cut(s) | 348, 368 |
| HaeIII | GGCC | 4 cut(s) | 563, 789, 911, 946 |
| HapII | CCGG | 1 cut(s) | 947 |
| HgaI | GACGC | 1 cut(s) | 465 |
| Hin1II | CATG | 7 cut(s) | 252, 278, 447, 562, 609, 886, 910 |
| HindIII | AAGCTT | 1 cut(s) | 893 |
| HinfI | GANTC | 4 cut(s) | 74, 221, 253, 642 |
| HpaII | CCGG | 1 cut(s) | 947 |
| HphI | GGTGA | 2 cut(s) | 317, 565 |
| Hpy166II | GTNNAC | 3 cut(s) | 107, 663, 683 |
| Hpy188I | TCNGA | 2 cut(s) | 237, 568 |
| Hpy8I | GTNNAC | 3 cut(s) | 107, 663, 683 |
| Hpy99I | CGWCG | 3 cut(s) | 148, 459, 801 |
| HpyAV | CCTTC | 4 cut(s) | 455, 704, 916, 935 |
| HpyCH4III | ACNGT | 3 cut(s) | 291, 846, 980 |
| HpyCH4IV | ACGT | 2 cut(s) | 757, 799 |
| HpyCH4V | TGCA | 2 cut(s) | 244, 470 |
| HpyF3I | CTNAG | 2 cut(s) | 225, 353 |
| HpySE526I | ACGT | 2 cut(s) | 757, 799 |
| Hsp92II | CATG | 7 cut(s) | 252, 278, 447, 562, 609, 886, 910 |
| Ksp22I | TGATCA | 1 cut(s) | 568 |
| Kzo9I | GATC | 4 cut(s) | 318, 356, 490, 568 |
| LmnI | GCTCC | 1 cut(s) | 344 |
| Lsp1109I | GCAGC | 1 cut(s) | 334 |
| MaeI | CTAG | 1 cut(s) | 264 |
| MaeII | ACGT | 2 cut(s) | 757, 799 |
| MaeIII | GTNAC | 4 cut(s) | 172, 202, 553, 734 |
| MalI | GATC | 4 cut(s) | 320, 358, 492, 570 |
| MboI | GATC | 4 cut(s) | 318, 356, 490, 568 |
| MboII | GAAGA | 8 cut(s) | 33, 127, 344, 349, 683, 686, 888, 931 |
| MflI | RGATCY | 2 cut(s) | 318, 356 |
| MhlI | GDGCHC | 3 cut(s) | 600, 828, 978 |
| MlsI | TGGCCA | 1 cut(s) | 789 |
| MluCI | AATT | 6 cut(s) | 148, 437, 486, 585, 616, 782 |
| MluNI | TGGCCA | 1 cut(s) | 789 |
| MlyI | GAGTC | 1 cut(s) | 83 |
| MmeI | TCCRAC | 2 cut(s) | 260, 892 |
| Mox20I | TGGCCA | 1 cut(s) | 789 |
| MscI | TGGCCA | 1 cut(s) | 789 |
| MseI | TTAA | 5 cut(s) | 27, 312, 323, 741, 761 |
| MslI | CAYNNNNRTG | 1 cut(s) | 887 |
| Msp20I | TGGCCA | 1 cut(s) | 789 |
| MspI | CCGG | 1 cut(s) | 947 |
| MspR9I | CCNGG | 2 cut(s) | 791, 948 |
| Mva1269I | GAATGC | 1 cut(s) | 246 |
| MvaI | CCWGG | 1 cut(s) | 791 |
| MvnI | CGCG | 2 cut(s) | 34, 459 |
| NciI | CCSGG | 1 cut(s) | 948 |
| NcoI | CCATGG | 2 cut(s) | 558, 906 |
| NdeII | GATC | 4 cut(s) | 318, 356, 490, 568 |
| NlaIII | CATG | 7 cut(s) | 252, 278, 447, 562, 609, 886, 910 |
| NmuCI | GTSAC | 2 cut(s) | 202, 553 |
| NspI | RCATGY | 1 cut(s) | 609 |
| PciI | ACATGT | 1 cut(s) | 605 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 140 |
| PctI | GAATGC | 1 cut(s) | 246 |
| PfeI | GAWTC | 3 cut(s) | 221, 253, 642 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 550 |
| PkrI | GCNGC | 2 cut(s) | 349, 369 |
| PleI | GAGTC | 1 cut(s) | 82 |
| PpsI | GAGTC | 1 cut(s) | 82 |
| PscI | ACATGT | 1 cut(s) | 605 |
| Psp1406I | AACGTT | 1 cut(s) | 757 |
| Psp6I | CCWGG | 1 cut(s) | 789 |
| PspEI | GGTNACC | 1 cut(s) | 553 |
| PspGI | CCWGG | 1 cut(s) | 789 |
| PspPI | GGNCC | 2 cut(s) | 287, 944 |
| PsuI | RGATCY | 2 cut(s) | 318, 356 |
| RsaI | GTAC | 2 cut(s) | 795, 954 |
| RsaNI | GTAC | 2 cut(s) | 794, 953 |
| RseI | CAYNNNNRTG | 1 cut(s) | 887 |
| SaqAI | TTAA | 5 cut(s) | 27, 312, 323, 741, 761 |
| SatI | GCNGC | 2 cut(s) | 348, 368 |
| Sau3AI | GATC | 4 cut(s) | 318, 356, 490, 568 |
| Sau96I | GGNCC | 2 cut(s) | 287, 944 |
| SchI | GAGTC | 1 cut(s) | 83 |
| ScrFI | CCNGG | 2 cut(s) | 791, 948 |
| SduI | GDGCHC | 3 cut(s) | 600, 828, 978 |
| SinI | GGWCC | 1 cut(s) | 287 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 887 |
| SmlI | CTYRAG | 1 cut(s) | 853 |
| SmoI | CTYRAG | 1 cut(s) | 853 |
| Sse9I | AATT | 6 cut(s) | 148, 437, 486, 585, 616, 782 |
| SsiI | CCGC | 1 cut(s) | 367 |
| SspI | AATATT | 1 cut(s) | 124 |
| SspMI | CTAG | 1 cut(s) | 264 |
| StyD4I | CCNGG | 2 cut(s) | 789, 946 |
| StyI | CCWWGG | 4 cut(s) | 65, 263, 558, 906 |
| TaaI | ACNGT | 3 cut(s) | 291, 846, 980 |
| TaiI | ACGT | 2 cut(s) | 760, 802 |
| TaqI | TCGA | 4 cut(s) | 146, 330, 454, 828 |
| TasI | AATT | 6 cut(s) | 148, 437, 486, 585, 616, 782 |
| TauI | GCSGC | 1 cut(s) | 370 |
| TfiI | GAWTC | 3 cut(s) | 221, 253, 642 |
| Tru1I | TTAA | 5 cut(s) | 27, 312, 323, 741, 761 |
| Tru9I | TTAA | 5 cut(s) | 27, 312, 323, 741, 761 |
| TseFI | GTSAC | 2 cut(s) | 202, 553 |
| TseI | GCWGC | 1 cut(s) | 347 |
| Tsp45I | GTSAC | 2 cut(s) | 202, 553 |
| TspDTI | ATGAA | 4 cut(s) | 63, 450, 723, 954 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 550 |
| VpaK11BI | GGWCC | 1 cut(s) | 287 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 650 |
| XapI | RAATTY | 3 cut(s) | 148, 437, 782 |
| XceI | RCATGY | 1 cut(s) | 609 |
| XmaJI | CCTAGG | 1 cut(s) | 263 |
| XspI | CTAG | 1 cut(s) | 264 |