ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 73 |
| Acc16I | TGCGCA | 1 cut(s) | 845 |
| Acc36I | ACCTGC | 1 cut(s) | 73 |
| AccB1I | GGYRCC | 1 cut(s) | 968 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 719 |
| AccI | GTMKAC | 1 cut(s) | 926 |
| AciI | CCGC | 2 cut(s) | 356, 1405 |
| AclWI | GGATC | 4 cut(s) | 236, 761, 774, 916 |
| AcoI | YGGCCR | 1 cut(s) | 1146 |
| AcsI | RAATTY | 3 cut(s) | 995, 1091, 1447 |
| AcuI | CTGAAG | 3 cut(s) | 336, 467, 1181 |
| AcvI | CACGTG | 1 cut(s) | 1010 |
| AcyI | GRCGYC | 1 cut(s) | 969 |
| AfaI | GTAC | 4 cut(s) | 505, 976, 1171, 1563 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 719, 1181, 1600 |
| AflIII | ACRYGT | 1 cut(s) | 1009 |
| AgsI | TTSAA | 9 cut(s) | 71, 122, 385, 461, 629, 802, 898, 1115, 1372 |
| AjiI | CACGTC | 2 cut(s) | 634, 1045 |
| AjnI | CCWGG | 2 cut(s) | 259, 769 |
| AluBI | AGCT | 5 cut(s) | 380, 1002, 1286, 1295, 1590 |
| AluI | AGCT | 5 cut(s) | 380, 1002, 1286, 1295, 1590 |
| Alw21I | GWGCWC | 3 cut(s) | 364, 1132, 1297 |
| Alw26I | GTCTC | 3 cut(s) | 488, 528, 1388 |
| Alw44I | GTGCAC | 1 cut(s) | 1128 |
| AlwI | GGATC | 4 cut(s) | 236, 761, 774, 916 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 719 |
| Ama87I | CYCGRG | 2 cut(s) | 272, 762 |
| AoxI | GGCC | 4 cut(s) | 1097, 1146, 1504, 1542 |
| ApaLI | GTGCAC | 1 cut(s) | 1128 |
| ApoI | RAATTY | 3 cut(s) | 995, 1091, 1447 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1583 |
| AspA2I | CCTAGG | 1 cut(s) | 314 |
| AspLEI | GCGC | 2 cut(s) | 846, 971 |
| AspS9I | GGNCC | 5 cut(s) | 168, 432, 775, 1039, 1504 |
| AsuC2I | CCSGG | 4 cut(s) | 763, 764, 872, 1453 |
| AsuHPI | GGTGA | 3 cut(s) | 361, 685, 1451 |
| AvaI | CYCGRG | 2 cut(s) | 272, 762 |
| AvaII | GGWCC | 4 cut(s) | 168, 432, 775, 1039 |
| AvrII | CCTAGG | 1 cut(s) | 314 |
| BaeGI | GKGCMC | 1 cut(s) | 1132 |
| BamHI | GGATCC | 1 cut(s) | 766 |
| BanI | GGYRCC | 1 cut(s) | 968 |
| BanII | GRGCYC | 1 cut(s) | 1297 |
| BbrPI | CACGTG | 1 cut(s) | 1010 |
| BbsI | GAAGAC | 1 cut(s) | 1489 |
| Bbv12I | GWGCWC | 3 cut(s) | 364, 1132, 1297 |
| BccI | CCATC | 4 cut(s) | 40, 620, 1430, 1547 |
| BceAI | ACGGC | 1 cut(s) | 325 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 230, 264 |
| BciT130I | CCWGG | 2 cut(s) | 261, 771 |
| BcnI | CCSGG | 4 cut(s) | 763, 764, 872, 1453 |
| BcoDI | GTCTC | 3 cut(s) | 488, 528, 1388 |
| BfaI | CTAG | 3 cut(s) | 315, 959, 1416 |
| BfmI | CTRYAG | 2 cut(s) | 333, 1313 |
| BfoI | RGCGCY | 1 cut(s) | 972 |
| BfuAI | ACCTGC | 1 cut(s) | 73 |
| BisI | GCNGC | 1 cut(s) | 1406 |
| BlnI | CCTAGG | 1 cut(s) | 314 |
| BlsI | GCNGC | 1 cut(s) | 1407 |
| BmcAI | AGTACT | 1 cut(s) | 1171 |
| Bme1390I | CCNGG | 6 cut(s) | 261, 763, 764, 771, 872, 1453 |
| Bme18I | GGWCC | 4 cut(s) | 168, 432, 775, 1039 |
| BmeT110I | CYCGRG | 2 cut(s) | 272, 762 |
| BmgBI | CACGTC | 2 cut(s) | 634, 1045 |
| BmgT120I | GGNCC | 5 cut(s) | 168, 432, 775, 1039, 1504 |
| BmiI | GGNNCC | 6 cut(s) | 169, 298, 768, 776, 970, 1188 |
| BmrFI | CCNGG | 6 cut(s) | 261, 763, 764, 771, 872, 1453 |
| BmrI | ACTGGG | 3 cut(s) | 225, 549, 1023 |
| BmsI | GCATC | 5 cut(s) | 643, 849, 1294, 1481, 1504 |
| BmuI | ACTGGG | 3 cut(s) | 225, 549, 1023 |
| BpiI | GAAGAC | 1 cut(s) | 1489 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1127, 1159 |
| BpmI | CTGGAG | 3 cut(s) | 813, 936, 1586 |
| BpuMI | CCSGG | 4 cut(s) | 763, 764, 872, 1453 |
| Bsa29I | ATCGAT | 1 cut(s) | 240 |
| BsaAI | YACGTR | 2 cut(s) | 930, 1010 |
| BsaHI | GRCGYC | 1 cut(s) | 969 |
| BsaJI | CCNNGG | 8 cut(s) | 300, 314, 341, 507, 762, 770, 1149, 1539 |
| BsaWI | WCCGGW | 4 cut(s) | 244, 324, 695, 1443 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 288, 318 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 719, 1181, 1600 |
| Bse118I | RCCGGY | 1 cut(s) | 1544 |
| Bse1I | ACTGG | 9 cut(s) | 171, 220, 544, 724, 989, 1029, 1305, 1406, 1569 |
| Bse3DI | GCAATG | 1 cut(s) | 77 |
| BseBI | CCWGG | 2 cut(s) | 261, 771 |
| BseCI | ATCGAT | 1 cut(s) | 240 |
| BseDI | CCNNGG | 8 cut(s) | 300, 314, 341, 507, 762, 770, 1149, 1539 |
| BseGI | GGATG | 5 cut(s) | 55, 610, 709, 1024, 1309 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 719, 1181, 1600 |
| BseMI | GCAATG | 1 cut(s) | 77 |
| BseMII | CTCAG | 2 cut(s) | 222, 502 |
| BseNI | ACTGG | 9 cut(s) | 171, 220, 544, 724, 989, 1029, 1305, 1406, 1569 |
| BseRI | GAGGAG | 1 cut(s) | 1172 |
| BseSI | GKGCMC | 1 cut(s) | 1132 |
| BshFI | GGCC | 4 cut(s) | 1099, 1148, 1506, 1544 |
| BshNI | GGYRCC | 1 cut(s) | 968 |
| BshVI | ATCGAT | 1 cut(s) | 240 |
| BsiHKAI | GWGCWC | 3 cut(s) | 364, 1132, 1297 |
| BsiHKCI | CYCGRG | 2 cut(s) | 272, 762 |
| BsiSI | CCGG | 8 cut(s) | 245, 325, 696, 763, 871, 1444, 1453, 1545 |
| BslFI | GGGAC | 4 cut(s) | 232, 788, 1031, 1240 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 719, 1181, 1600 |
| BsmAI | GTCTC | 3 cut(s) | 488, 528, 1388 |
| BsmFI | GGGAC | 4 cut(s) | 232, 788, 1031, 1240 |
| BsnI | GGCC | 4 cut(s) | 1099, 1148, 1506, 1544 |
| BsoBI | CYCGRG | 2 cut(s) | 272, 762 |
| Bsp1286I | GDGCHC | 3 cut(s) | 364, 1132, 1297 |
| Bsp1407I | TGTACA | 1 cut(s) | 974 |
| Bsp143I | GATC | 9 cut(s) | 150, 222, 234, 241, 533, 578, 766, 908, 1497 |
| BspACI | CCGC | 2 cut(s) | 356, 1405 |
| BspANI | GGCC | 4 cut(s) | 1099, 1148, 1506, 1544 |
| BspCNI | CTCAG | 2 cut(s) | 223, 501 |
| BspDI | ATCGAT | 1 cut(s) | 240 |
| BspLI | GGNNCC | 6 cut(s) | 169, 298, 768, 776, 970, 1188 |
| BspMI | ACCTGC | 1 cut(s) | 73 |
| BspPI | GGATC | 4 cut(s) | 236, 761, 774, 916 |
| BspQI | GCTCTTC | 1 cut(s) | 1314 |
| BspT107I | GGYRCC | 1 cut(s) | 968 |
| BsrDI | GCAATG | 1 cut(s) | 77 |
| BsrFI | RCCGGY | 1 cut(s) | 1544 |
| BsrGI | TGTACA | 1 cut(s) | 974 |
| BsrI | ACTGG | 9 cut(s) | 171, 220, 544, 724, 989, 1029, 1305, 1406, 1569 |
| BssAI | RCCGGY | 1 cut(s) | 1544 |
| BssECI | CCNNGG | 8 cut(s) | 300, 314, 341, 507, 762, 770, 1149, 1539 |
| BssMI | GATC | 9 cut(s) | 150, 222, 234, 241, 533, 578, 766, 908, 1497 |
| BssNAI | GTATAC | 1 cut(s) | 927 |
| BssNI | GRCGYC | 1 cut(s) | 969 |
| BssT1I | CCWWGG | 5 cut(s) | 300, 314, 507, 1149, 1539 |
| Bst1107I | GTATAC | 1 cut(s) | 927 |
| Bst2UI | CCWGG | 2 cut(s) | 261, 771 |
| Bst4CI | ACNGT | 2 cut(s) | 642, 1255 |
| Bst6I | CTCTTC | 5 cut(s) | 531, 1056, 1110, 1269, 1314 |
| BstACI | GRCGYC | 1 cut(s) | 969 |
| BstAUI | TGTACA | 1 cut(s) | 974 |
| BstBAI | YACGTR | 2 cut(s) | 930, 1010 |
| BstC8I | GCNNGC | 1 cut(s) | 864 |
| BstDEI | CTNAG | 2 cut(s) | 231, 488 |
| BstDSI | CCRYGG | 1 cut(s) | 341 |
| BstEII | GGTNACC | 1 cut(s) | 1439 |
| BstF5I | GGATG | 5 cut(s) | 55, 610, 709, 1024, 1309 |
| BstH2I | RGCGCY | 1 cut(s) | 972 |
| BstHHI | GCGC | 2 cut(s) | 846, 971 |
| BstKTI | GATC | 9 cut(s) | 153, 225, 237, 244, 536, 581, 769, 911, 1500 |
| BstMAI | GTCTC | 3 cut(s) | 488, 528, 1388 |
| BstMBI | GATC | 9 cut(s) | 150, 222, 234, 241, 533, 578, 766, 908, 1497 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1292, 1360 |
| BstNI | CCWGG | 2 cut(s) | 261, 771 |
| BstNSI | RCATGY | 1 cut(s) | 443 |
| BstPI | GGTNACC | 1 cut(s) | 1439 |
| BstSCI | CCNGG | 6 cut(s) | 259, 761, 762, 769, 870, 1451 |
| BstSFI | CTRYAG | 2 cut(s) | 333, 1313 |
| BstSLI | GKGCMC | 1 cut(s) | 1132 |
| BstV2I | GAAGAC | 1 cut(s) | 1489 |
| BstX2I | RGATCY | 2 cut(s) | 766, 908 |
| BstYI | RGATCY | 2 cut(s) | 766, 908 |
| BstZ17I | GTATAC | 1 cut(s) | 927 |
| Bsu15I | ATCGAT | 1 cut(s) | 240 |
| BsuRI | GGCC | 4 cut(s) | 1099, 1148, 1506, 1544 |
| BsuTUI | ATCGAT | 1 cut(s) | 240 |
| BtgI | CCRYGG | 1 cut(s) | 341 |
| BtgZI | GCGATG | 1 cut(s) | 20 |
| BtrI | CACGTC | 2 cut(s) | 634, 1045 |
| BtsCI | GGATG | 5 cut(s) | 55, 610, 709, 1024, 1309 |
| BtsIMutI | CAGTG | 3 cut(s) | 178, 207, 496 |
| BveI | ACCTGC | 1 cut(s) | 73 |
| Cac8I | GCNNGC | 1 cut(s) | 864 |
| CaiI | CAGNNNCTG | 1 cut(s) | 719 |
| CfoI | GCGC | 2 cut(s) | 846, 971 |
| Cfr10I | RCCGGY | 1 cut(s) | 1544 |
| Cfr13I | GGNCC | 5 cut(s) | 168, 432, 775, 1039, 1504 |
| Cfr9I | CCCGGG | 1 cut(s) | 762 |
| ClaI | ATCGAT | 1 cut(s) | 240 |
| CseI | GACGC | 2 cut(s) | 136, 716 |
| Csp6I | GTAC | 4 cut(s) | 504, 975, 1170, 1562 |
| CviAII | CATG | 6 cut(s) | 131, 388, 440, 665, 1133, 1242 |
| CviQI | GTAC | 4 cut(s) | 504, 975, 1170, 1562 |
| DdeI | CTNAG | 2 cut(s) | 231, 488 |
| DinI | GGCGCC | 1 cut(s) | 970 |
| DpnI | GATC | 9 cut(s) | 152, 224, 236, 243, 535, 580, 768, 910, 1499 |
| DpnII | GATC | 9 cut(s) | 150, 222, 234, 241, 533, 578, 766, 908, 1497 |
| EaeI | YGGCCR | 1 cut(s) | 1146 |
| Eam1104I | CTCTTC | 5 cut(s) | 531, 1056, 1110, 1269, 1314 |
| EarI | CTCTTC | 5 cut(s) | 531, 1056, 1110, 1269, 1314 |
| Ecl136II | GAGCTC | 1 cut(s) | 1295 |
| Eco130I | CCWWGG | 5 cut(s) | 300, 314, 507, 1149, 1539 |
| Eco24I | GRGCYC | 1 cut(s) | 1297 |
| Eco47I | GGWCC | 4 cut(s) | 168, 432, 775, 1039 |
| Eco53kI | GAGCTC | 1 cut(s) | 1295 |
| Eco57I | CTGAAG | 3 cut(s) | 336, 467, 1181 |
| Eco72I | CACGTG | 1 cut(s) | 1010 |
| Eco88I | CYCGRG | 2 cut(s) | 272, 762 |
| Eco91I | GGTNACC | 1 cut(s) | 1439 |
| EcoICRI | GAGCTC | 1 cut(s) | 1295 |
| EcoO109I | RGGNCCY | 2 cut(s) | 775, 1504 |
| EcoO65I | GGTNACC | 1 cut(s) | 1439 |
| EcoRI | GAATTC | 2 cut(s) | 995, 1447 |
| EcoRII | CCWGG | 2 cut(s) | 259, 769 |
| EcoT14I | CCWWGG | 5 cut(s) | 300, 314, 507, 1149, 1539 |
| EcoT38I | GRGCYC | 1 cut(s) | 1297 |
| EgeI | GGCGCC | 1 cut(s) | 970 |
| EheI | GGCGCC | 1 cut(s) | 970 |
| ErhI | CCWWGG | 5 cut(s) | 300, 314, 507, 1149, 1539 |
| FaeI | CATG | 6 cut(s) | 134, 391, 443, 668, 1136, 1245 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1493, 1525 |
| FaqI | GGGAC | 4 cut(s) | 232, 788, 1031, 1240 |
| FatI | CATG | 6 cut(s) | 130, 387, 439, 664, 1132, 1241 |
| FauI | CCCGC | 1 cut(s) | 349 |
| FblI | GTMKAC | 1 cut(s) | 926 |
| Fnu4HI | GCNGC | 1 cut(s) | 1406 |
| FokI | GGATG | 5 cut(s) | 62, 617, 696, 1011, 1316 |
| FriOI | GRGCYC | 1 cut(s) | 1297 |
| Fsp4HI | GCNGC | 1 cut(s) | 1406 |
| FspBI | CTAG | 3 cut(s) | 315, 959, 1416 |
| FspI | TGCGCA | 1 cut(s) | 845 |
| GlaI | GCGC | 2 cut(s) | 845, 970 |
| GluI | GCNGC | 1 cut(s) | 1406 |
| GsuI | CTGGAG | 3 cut(s) | 813, 936, 1586 |
| HaeII | RGCGCY | 1 cut(s) | 972 |
| HaeIII | GGCC | 4 cut(s) | 1099, 1148, 1506, 1544 |
| HapII | CCGG | 8 cut(s) | 245, 325, 696, 763, 871, 1444, 1453, 1545 |
| HgaI | GACGC | 2 cut(s) | 136, 716 |
| HhaI | GCGC | 2 cut(s) | 846, 971 |
| Hin1I | GRCGYC | 1 cut(s) | 969 |
| Hin1II | CATG | 6 cut(s) | 134, 391, 443, 668, 1136, 1245 |
| Hin6I | GCGC | 2 cut(s) | 844, 969 |
| HinP1I | GCGC | 2 cut(s) | 844, 969 |
| HincII | GTYRAC | 2 cut(s) | 213, 1018 |
| HindII | GTYRAC | 2 cut(s) | 213, 1018 |
| HinfI | GANTC | 8 cut(s) | 30, 197, 268, 496, 608, 938, 1228, 1535 |
| HpaII | CCGG | 8 cut(s) | 245, 325, 696, 763, 871, 1444, 1453, 1545 |
| HphI | GGTGA | 3 cut(s) | 361, 685, 1451 |
| Hpy166II | GTNNAC | 7 cut(s) | 176, 213, 369, 927, 977, 1018, 1130 |
| Hpy188III | TCNNGA | 3 cut(s) | 629, 713, 1416 |
| Hpy8I | GTNNAC | 7 cut(s) | 176, 213, 369, 927, 977, 1018, 1130 |
| Hpy99I | CGWCG | 1 cut(s) | 296 |
| HpyAV | CCTTC | 7 cut(s) | 51, 158, 423, 667, 892, 943, 1031 |
| HpyCH4III | ACNGT | 2 cut(s) | 642, 1255 |
| HpyCH4IV | ACGT | 7 cut(s) | 117, 291, 633, 751, 929, 1009, 1044 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1292, 1360 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 488 |
| HpySE526I | ACGT | 7 cut(s) | 117, 291, 633, 751, 929, 1009, 1044 |
| Hsp92I | GRCGYC | 1 cut(s) | 969 |
| Hsp92II | CATG | 6 cut(s) | 134, 391, 443, 668, 1136, 1245 |
| HspAI | GCGC | 2 cut(s) | 844, 969 |
| KasI | GGCGCC | 1 cut(s) | 968 |
| Kzo9I | GATC | 9 cut(s) | 150, 222, 234, 241, 533, 578, 766, 908, 1497 |
| LguI | GCTCTTC | 1 cut(s) | 1314 |
| LmnI | GCTCC | 4 cut(s) | 296, 367, 673, 1595 |
| LweI | GCATC | 5 cut(s) | 643, 849, 1294, 1481, 1504 |
| MaeI | CTAG | 3 cut(s) | 315, 959, 1416 |
| MaeII | ACGT | 7 cut(s) | 117, 291, 633, 751, 929, 1009, 1044 |
| MaeIII | GTNAC | 3 cut(s) | 890, 935, 1439 |
| MalI | GATC | 9 cut(s) | 152, 224, 236, 243, 535, 580, 768, 910, 1499 |
| MboI | GATC | 9 cut(s) | 150, 222, 234, 241, 533, 578, 766, 908, 1497 |
| MflI | RGATCY | 2 cut(s) | 766, 908 |
| MhlI | GDGCHC | 3 cut(s) | 364, 1132, 1297 |
| Mly113I | GGCGCC | 1 cut(s) | 969 |
| MlyI | GAGTC | 5 cut(s) | 39, 490, 932, 1222, 1544 |
| MmeI | TCCRAC | 4 cut(s) | 274, 864, 966, 1017 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1583 |
| MspA1I | CMGCKG | 1 cut(s) | 356 |
| MspI | CCGG | 8 cut(s) | 245, 325, 696, 763, 871, 1444, 1453, 1545 |
| MspR9I | CCNGG | 6 cut(s) | 261, 763, 764, 771, 872, 1453 |
| MvaI | CCWGG | 2 cut(s) | 261, 771 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1292, 1360 |
| NarI | GGCGCC | 1 cut(s) | 969 |
| NciI | CCSGG | 4 cut(s) | 763, 764, 872, 1453 |
| NdeII | GATC | 9 cut(s) | 150, 222, 234, 241, 533, 578, 766, 908, 1497 |
| NlaIII | CATG | 6 cut(s) | 134, 391, 443, 668, 1136, 1245 |
| NlaIV | GGNNCC | 6 cut(s) | 169, 298, 768, 776, 970, 1188 |
| NmeAIII | GCCGAG | 1 cut(s) | 1124 |
| NmuCI | GTSAC | 2 cut(s) | 935, 1439 |
| NsbI | TGCGCA | 1 cut(s) | 845 |
| NspI | RCATGY | 1 cut(s) | 443 |
| PaqCI | CACCTGC | 1 cut(s) | 73 |
| PciSI | GCTCTTC | 1 cut(s) | 1314 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1583 |
| PfeI | GAWTC | 3 cut(s) | 197, 268, 608 |
| PflFI | GACNNNGTC | 2 cut(s) | 726, 1043 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 719 |
| PfoI | TCCNGGA | 1 cut(s) | 870 |
| PkrI | GCNGC | 1 cut(s) | 1407 |
| PleI | GAGTC | 5 cut(s) | 38, 490, 932, 1222, 1543 |
| PluTI | GGCGCC | 1 cut(s) | 972 |
| PmaCI | CACGTG | 1 cut(s) | 1010 |
| PmlI | CACGTG | 1 cut(s) | 1010 |
| PpsI | GAGTC | 5 cut(s) | 38, 490, 932, 1222, 1543 |
| Ppu21I | YACGTR | 2 cut(s) | 930, 1010 |
| PpuMI | RGGWCCY | 1 cut(s) | 775 |
| Psp124BI | GAGCTC | 1 cut(s) | 1297 |
| Psp5II | RGGWCCY | 1 cut(s) | 775 |
| Psp6I | CCWGG | 2 cut(s) | 259, 769 |
| PspCI | CACGTG | 1 cut(s) | 1010 |
| PspEI | GGTNACC | 1 cut(s) | 1439 |
| PspGI | CCWGG | 2 cut(s) | 259, 769 |
| PspN4I | GGNNCC | 6 cut(s) | 169, 298, 768, 776, 970, 1188 |
| PspPI | GGNCC | 5 cut(s) | 168, 432, 775, 1039, 1504 |
| PspPPI | RGGWCCY | 1 cut(s) | 775 |
| PstNI | CAGNNNCTG | 1 cut(s) | 719 |
| PsuI | RGATCY | 2 cut(s) | 766, 908 |
| PsyI | GACNNNGTC | 2 cut(s) | 726, 1043 |
| RsaI | GTAC | 4 cut(s) | 505, 976, 1171, 1563 |
| RsaNI | GTAC | 4 cut(s) | 504, 975, 1170, 1562 |
| SacI | GAGCTC | 1 cut(s) | 1297 |
| SapI | GCTCTTC | 1 cut(s) | 1314 |
| SatI | GCNGC | 1 cut(s) | 1406 |
| Sau3AI | GATC | 9 cut(s) | 150, 222, 234, 241, 533, 578, 766, 908, 1497 |
| Sau96I | GGNCC | 5 cut(s) | 168, 432, 775, 1039, 1504 |
| ScaI | AGTACT | 1 cut(s) | 1171 |
| SchI | GAGTC | 5 cut(s) | 39, 490, 932, 1222, 1544 |
| ScrFI | CCNGG | 6 cut(s) | 261, 763, 764, 771, 872, 1453 |
| SduI | GDGCHC | 3 cut(s) | 364, 1132, 1297 |
| SfaNI | GCATC | 5 cut(s) | 643, 849, 1294, 1481, 1504 |
| SfcI | CTRYAG | 2 cut(s) | 333, 1313 |
| SfoI | GGCGCC | 1 cut(s) | 970 |
| SinI | GGWCC | 4 cut(s) | 168, 432, 775, 1039 |
| SmaI | CCCGGG | 1 cut(s) | 764 |
| SsiI | CCGC | 2 cut(s) | 356, 1405 |
| SspDI | GGCGCC | 1 cut(s) | 968 |
| SspI | AATATT | 2 cut(s) | 394, 1582 |
| SspMI | CTAG | 3 cut(s) | 315, 959, 1416 |
| SstI | GAGCTC | 1 cut(s) | 1297 |
| StyD4I | CCNGG | 6 cut(s) | 259, 761, 762, 769, 870, 1451 |
| StyI | CCWWGG | 5 cut(s) | 300, 314, 507, 1149, 1539 |
| TaaI | ACNGT | 2 cut(s) | 642, 1255 |
| TaiI | ACGT | 7 cut(s) | 120, 294, 636, 754, 932, 1012, 1047 |
| TaqI | TCGA | 5 cut(s) | 37, 44, 149, 240, 1475 |
| TaqII | GACCGA | 1 cut(s) | 582 |
| TatI | WGTACW | 2 cut(s) | 974, 1169 |
| TauI | GCSGC | 1 cut(s) | 1408 |
| TfiI | GAWTC | 3 cut(s) | 197, 268, 608 |
| TscAI | CASTG | 3 cut(s) | 178, 207, 496 |
| TseFI | GTSAC | 2 cut(s) | 935, 1439 |
| Tsp45I | GTSAC | 2 cut(s) | 935, 1439 |
| TspDTI | ATGAA | 8 cut(s) | 23, 147, 177, 404, 653, 1013, 1389, 1451 |
| TspGWI | ACGGA | 2 cut(s) | 354, 1055 |
| TspMI | CCCGGG | 1 cut(s) | 762 |
| TspRI | CASTG | 3 cut(s) | 178, 207, 496 |
| Tth111I | GACNNNGTC | 2 cut(s) | 726, 1043 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 719 |
| VneI | GTGCAC | 1 cut(s) | 1128 |
| VpaK11BI | GGWCC | 4 cut(s) | 168, 432, 775, 1039 |
| XapI | RAATTY | 3 cut(s) | 995, 1091, 1447 |
| XbaI | TCTAGA | 1 cut(s) | 1415 |
| XceI | RCATGY | 1 cut(s) | 443 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 777 |
| XmaI | CCCGGG | 1 cut(s) | 762 |
| XmaJI | CCTAGG | 1 cut(s) | 314 |
| XmiI | GTMKAC | 1 cut(s) | 926 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1583 |
| XspI | CTAG | 3 cut(s) | 315, 959, 1416 |
| ZrmI | AGTACT | 1 cut(s) | 1171 |