ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 319 - 551 | 1.3e-22 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 712, 1630, 1689 |
| AciI | CCGC | 2 cut(s) | 152, 249 |
| AclWI | GGATC | 6 cut(s) | 217, 245, 928, 944, 1036, 1361 |
| AcsI | RAATTY | 3 cut(s) | 430, 1005, 1725 |
| AcuI | CTGAAG | 5 cut(s) | 656, 819, 1055, 1143, 1628 |
| AfaI | GTAC | 3 cut(s) | 869, 1224, 1718 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 26, 1349 |
| AgsI | TTSAA | 9 cut(s) | 64, 339, 392, 544, 668, 758, 973, 1177, 1743 |
| AjnI | CCWGG | 1 cut(s) | 118 |
| AleI | CACNNNNGTG | 1 cut(s) | 923 |
| Alw21I | GWGCWC | 4 cut(s) | 526, 628, 904, 1167 |
| Alw26I | GTCTC | 3 cut(s) | 120, 305, 1380 |
| AlwI | GGATC | 6 cut(s) | 217, 245, 928, 944, 1036, 1361 |
| Ama87I | CYCGRG | 1 cut(s) | 1347 |
| AoxI | GGCC | 3 cut(s) | 17, 854, 1711 |
| ApeKI | GCWGC | 2 cut(s) | 401, 804 |
| ApoI | RAATTY | 3 cut(s) | 430, 1005, 1725 |
| AseI | ATTAAT | 1 cut(s) | 1458 |
| AspLEI | GCGC | 1 cut(s) | 1132 |
| AspS9I | GGNCC | 3 cut(s) | 251, 855, 1711 |
| AsuHPI | GGTGA | 4 cut(s) | 25, 421, 1376, 1726 |
| AvaI | CYCGRG | 1 cut(s) | 1347 |
| AvaII | GGWCC | 1 cut(s) | 251 |
| BanII | GRGCYC | 1 cut(s) | 628 |
| BauI | CACGAG | 1 cut(s) | 69 |
| Bbv12I | GWGCWC | 4 cut(s) | 526, 628, 904, 1167 |
| BbvI | GCAGC | 2 cut(s) | 388, 816 |
| BccI | CCATC | 4 cut(s) | 104, 363, 719, 730 |
| BceAI | ACGGC | 1 cut(s) | 886 |
| BciT130I | CCWGG | 1 cut(s) | 120 |
| BciVI | GTATCC | 1 cut(s) | 1440 |
| BclI | TGATCA | 3 cut(s) | 370, 445, 1731 |
| BcoDI | GTCTC | 3 cut(s) | 120, 305, 1380 |
| BfaI | CTAG | 4 cut(s) | 345, 501, 506, 621 |
| BfuI | GTATCC | 1 cut(s) | 1440 |
| BglII | AGATCT | 1 cut(s) | 879 |
| BisI | GCNGC | 2 cut(s) | 402, 805 |
| BlsI | GCNGC | 2 cut(s) | 403, 806 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| Bme18I | GGWCC | 1 cut(s) | 251 |
| BmeT110I | CYCGRG | 1 cut(s) | 1347 |
| BmgT120I | GGNCC | 3 cut(s) | 251, 855, 1711 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BmrI | ACTGGG | 2 cut(s) | 243, 354 |
| BmsI | GCATC | 2 cut(s) | 467, 1462 |
| BmuI | ACTGGG | 2 cut(s) | 243, 354 |
| BoxI | GACNNNNGTC | 1 cut(s) | 297 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1154, 1186 |
| BpmI | CTGGAG | 2 cut(s) | 198, 1452 |
| BpuEI | CTTGAG | 1 cut(s) | 576 |
| BsaAI | YACGTR | 1 cut(s) | 320 |
| BsaI | GGTCTC | 1 cut(s) | 120 |
| BsaJI | CCNNGG | 2 cut(s) | 20, 119 |
| BsaWI | WCCGGW | 1 cut(s) | 406 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 26, 1349 |
| Bse1I | ACTGG | 2 cut(s) | 238, 360 |
| Bse3DI | GCAATG | 2 cut(s) | 978, 1260 |
| BseBI | CCWGG | 1 cut(s) | 120 |
| BseDI | CCNNGG | 2 cut(s) | 20, 119 |
| BseGI | GGATG | 3 cut(s) | 144, 355, 741 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 26, 1349 |
| BseMI | GCAATG | 2 cut(s) | 978, 1260 |
| BseMII | CTCAG | 2 cut(s) | 146, 532 |
| BseNI | ACTGG | 2 cut(s) | 238, 360 |
| BseXI | GCAGC | 2 cut(s) | 388, 816 |
| BsgI | GTGCAG | 1 cut(s) | 1419 |
| Bsh1285I | CGRYCG | 1 cut(s) | 198 |
| BshFI | GGCC | 3 cut(s) | 19, 856, 1713 |
| BsiEI | CGRYCG | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 4 cut(s) | 526, 628, 904, 1167 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1347 |
| BsiSI | CCGG | 1 cut(s) | 407 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 26, 1349 |
| BsmAI | GTCTC | 3 cut(s) | 120, 305, 1380 |
| BsmI | GAATGC | 2 cut(s) | 1547, 1622 |
| BsnI | GGCC | 3 cut(s) | 19, 856, 1713 |
| Bso31I | GGTCTC | 1 cut(s) | 120 |
| BsoBI | CYCGRG | 1 cut(s) | 1347 |
| Bsp1286I | GDGCHC | 4 cut(s) | 526, 628, 904, 1167 |
| BspACI | CCGC | 2 cut(s) | 152, 249 |
| BspANI | GGCC | 3 cut(s) | 19, 856, 1713 |
| BspCNI | CTCAG | 2 cut(s) | 147, 531 |
| BspPI | GGATC | 6 cut(s) | 217, 245, 928, 944, 1036, 1361 |
| BspTNI | GGTCTC | 1 cut(s) | 120 |
| BsrDI | GCAATG | 2 cut(s) | 978, 1260 |
| BsrI | ACTGG | 2 cut(s) | 238, 360 |
| BssECI | CCNNGG | 2 cut(s) | 20, 119 |
| BssSI | CACGAG | 1 cut(s) | 69 |
| BssT1I | CCWWGG | 1 cut(s) | 20 |
| Bst2BI | CACGAG | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 7 cut(s) | 310, 618, 1052, 1285, 1294, 1511, 1551 |
| Bst6I | CTCTTC | 1 cut(s) | 1604 |
| BstBAI | YACGTR | 1 cut(s) | 320 |
| BstDEI | CTNAG | 2 cut(s) | 155, 518 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1347 |
| BstF5I | GGATG | 3 cut(s) | 144, 355, 741 |
| BstHHI | GCGC | 1 cut(s) | 1132 |
| BstMAI | GTCTC | 3 cut(s) | 120, 305, 1380 |
| BstMCI | CGRYCG | 1 cut(s) | 198 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 497 |
| BstNI | CCWGG | 1 cut(s) | 120 |
| BstNSI | RCATGY | 1 cut(s) | 185 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 297 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BstV1I | GCAGC | 2 cut(s) | 388, 816 |
| BstX2I | RGATCY | 5 cut(s) | 209, 237, 879, 949, 1041 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 222, 1021 |
| BstYI | RGATCY | 5 cut(s) | 209, 237, 879, 949, 1041 |
| BsuI | GTATCC | 1 cut(s) | 1440 |
| BsuRI | GGCC | 3 cut(s) | 19, 856, 1713 |
| BtsCI | GGATG | 3 cut(s) | 144, 355, 741 |
| BtsI | GCAGTG | 1 cut(s) | 880 |
| BtsIMutI | CAGTG | 5 cut(s) | 526, 880, 1057, 1281, 1290 |
| CfoI | GCGC | 1 cut(s) | 1132 |
| Cfr13I | GGNCC | 3 cut(s) | 251, 855, 1711 |
| CpoI | CGGWCCG | 1 cut(s) | 251 |
| Csp6I | GTAC | 3 cut(s) | 868, 1223, 1717 |
| CspI | CGGWCCG | 1 cut(s) | 251 |
| CviAII | CATG | 3 cut(s) | 182, 923, 1697 |
| CviQI | GTAC | 3 cut(s) | 868, 1223, 1717 |
| DdeI | CTNAG | 2 cut(s) | 155, 518 |
| Eam1104I | CTCTTC | 1 cut(s) | 1604 |
| EarI | CTCTTC | 1 cut(s) | 1604 |
| Ecl136II | GAGCTC | 1 cut(s) | 626 |
| Eco130I | CCWWGG | 1 cut(s) | 20 |
| Eco147I | AGGCCT | 1 cut(s) | 19 |
| Eco24I | GRGCYC | 1 cut(s) | 628 |
| Eco31I | GGTCTC | 1 cut(s) | 120 |
| Eco32I | GATATC | 2 cut(s) | 1098, 1706 |
| Eco47I | GGWCC | 1 cut(s) | 251 |
| Eco53kI | GAGCTC | 1 cut(s) | 626 |
| Eco57I | CTGAAG | 5 cut(s) | 656, 819, 1055, 1143, 1628 |
| Eco88I | CYCGRG | 1 cut(s) | 1347 |
| EcoICRI | GAGCTC | 1 cut(s) | 626 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1347 |
| EcoRII | CCWGG | 1 cut(s) | 118 |
| EcoRV | GATATC | 2 cut(s) | 1098, 1706 |
| EcoT14I | CCWWGG | 1 cut(s) | 20 |
| EcoT38I | GRGCYC | 1 cut(s) | 628 |
| ErhI | CCWWGG | 1 cut(s) | 20 |
| FaeI | CATG | 3 cut(s) | 185, 926, 1700 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 570, 602 |
| FatI | CATG | 3 cut(s) | 181, 922, 1696 |
| FauNDI | CATATG | 2 cut(s) | 529, 1635 |
| FbaI | TGATCA | 3 cut(s) | 370, 445, 1731 |
| FblI | GTMKAC | 3 cut(s) | 712, 1630, 1689 |
| Fnu4HI | GCNGC | 2 cut(s) | 402, 805 |
| FokI | GGATG | 3 cut(s) | 151, 342, 748 |
| FriOI | GRGCYC | 1 cut(s) | 628 |
| Fsp4HI | GCNGC | 2 cut(s) | 402, 805 |
| FspBI | CTAG | 4 cut(s) | 345, 501, 506, 621 |
| GlaI | GCGC | 1 cut(s) | 1131 |
| GluI | GCNGC | 2 cut(s) | 402, 805 |
| GsuI | CTGGAG | 2 cut(s) | 198, 1452 |
| HaeIII | GGCC | 3 cut(s) | 19, 856, 1713 |
| HapII | CCGG | 1 cut(s) | 407 |
| HhaI | GCGC | 1 cut(s) | 1132 |
| Hin1II | CATG | 3 cut(s) | 185, 926, 1700 |
| Hin6I | GCGC | 1 cut(s) | 1130 |
| HinP1I | GCGC | 1 cut(s) | 1130 |
| HincII | GTYRAC | 2 cut(s) | 614, 1631 |
| HindII | GTYRAC | 2 cut(s) | 614, 1631 |
| HindIII | AAGCTT | 2 cut(s) | 1241, 1745 |
| HinfI | GANTC | 3 cut(s) | 610, 1353, 1596 |
| HpaII | CCGG | 1 cut(s) | 407 |
| HphI | GGTGA | 4 cut(s) | 25, 421, 1376, 1726 |
| Hpy166II | GTNNAC | 6 cut(s) | 258, 614, 713, 868, 1631, 1690 |
| Hpy188I | TCNGA | 7 cut(s) | 370, 440, 799, 830, 1102, 1152, 1358 |
| Hpy188III | TCNNGA | 7 cut(s) | 215, 304, 467, 593, 621, 1347, 1469 |
| Hpy8I | GTNNAC | 6 cut(s) | 258, 614, 713, 868, 1631, 1690 |
| Hpy99I | CGWCG | 1 cut(s) | 675 |
| HpyAV | CCTTC | 7 cut(s) | 3, 631, 794, 839, 1353, 1397, 1422 |
| HpyCH4III | ACNGT | 7 cut(s) | 310, 618, 1052, 1285, 1294, 1511, 1551 |
| HpyCH4IV | ACGT | 2 cut(s) | 319, 670 |
| HpyCH4V | TGCA | 6 cut(s) | 176, 1253, 1400, 1486, 1529, 1567 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 497 |
| HpyF3I | CTNAG | 2 cut(s) | 155, 518 |
| HpySE526I | ACGT | 2 cut(s) | 319, 670 |
| Hsp92II | CATG | 3 cut(s) | 185, 926, 1700 |
| HspAI | GCGC | 1 cut(s) | 1130 |
| Ksp22I | TGATCA | 3 cut(s) | 370, 445, 1731 |
| LmnI | GCTCC | 8 cut(s) | 100, 409, 529, 743, 907, 1016, 1215, 1480 |
| Lsp1109I | GCAGC | 2 cut(s) | 388, 816 |
| LweI | GCATC | 2 cut(s) | 467, 1462 |
| MaeI | CTAG | 4 cut(s) | 345, 501, 506, 621 |
| MaeII | ACGT | 2 cut(s) | 319, 670 |
| MaeIII | GTNAC | 7 cut(s) | 190, 409, 766, 911, 925, 1285, 1432 |
| MboII | GAAGA | 8 cut(s) | 432, 770, 786, 845, 1048, 1051, 1550, 1621 |
| MflI | RGATCY | 5 cut(s) | 209, 237, 879, 949, 1041 |
| MhlI | GDGCHC | 4 cut(s) | 526, 628, 904, 1167 |
| MluCI | AATT | 8 cut(s) | 85, 430, 544, 603, 702, 753, 1005, 1725 |
| MlyI | GAGTC | 1 cut(s) | 619 |
| MmeI | TCCRAC | 1 cut(s) | 1161 |
| MseI | TTAA | 4 cut(s) | 564, 705, 1394, 1458 |
| MslI | CAYNNNNRTG | 4 cut(s) | 186, 923, 1441, 1572 |
| MspA1I | CMGCKG | 1 cut(s) | 154 |
| MspI | CCGG | 1 cut(s) | 407 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| Mva1269I | GAATGC | 2 cut(s) | 1547, 1622 |
| MvaI | CCWGG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 497 |
| NdeI | CATATG | 2 cut(s) | 529, 1635 |
| NlaIII | CATG | 3 cut(s) | 185, 926, 1700 |
| NmuCI | GTSAC | 3 cut(s) | 190, 409, 925 |
| NspI | RCATGY | 1 cut(s) | 185 |
| OliI | CACNNNNGTG | 1 cut(s) | 923 |
| PaeR7I | CTCGAG | 1 cut(s) | 1347 |
| PceI | AGGCCT | 1 cut(s) | 19 |
| PctI | GAATGC | 2 cut(s) | 1547, 1622 |
| PfeI | GAWTC | 2 cut(s) | 1353, 1596 |
| PkrI | GCNGC | 2 cut(s) | 403, 806 |
| Ple19I | CGATCG | 1 cut(s) | 198 |
| PleI | GAGTC | 1 cut(s) | 618 |
| PpsI | GAGTC | 1 cut(s) | 618 |
| Ppu21I | YACGTR | 1 cut(s) | 320 |
| PshAI | GACNNNNGTC | 1 cut(s) | 297 |
| PshBI | ATTAAT | 1 cut(s) | 1458 |
| Psp124BI | GAGCTC | 1 cut(s) | 628 |
| Psp6I | CCWGG | 1 cut(s) | 118 |
| PspGI | CCWGG | 1 cut(s) | 118 |
| PspPI | GGNCC | 3 cut(s) | 251, 855, 1711 |
| PsuI | RGATCY | 5 cut(s) | 209, 237, 879, 949, 1041 |
| PvuI | CGATCG | 1 cut(s) | 198 |
| RsaI | GTAC | 3 cut(s) | 869, 1224, 1718 |
| RsaNI | GTAC | 3 cut(s) | 868, 1223, 1717 |
| RseI | CAYNNNNRTG | 4 cut(s) | 186, 923, 1441, 1572 |
| Rsr2I | CGGWCCG | 1 cut(s) | 251 |
| RsrII | CGGWCCG | 1 cut(s) | 251 |
| SacI | GAGCTC | 1 cut(s) | 628 |
| SalI | GTCGAC | 1 cut(s) | 1629 |
| SaqAI | TTAA | 4 cut(s) | 564, 705, 1394, 1458 |
| SatI | GCNGC | 2 cut(s) | 402, 805 |
| Sau96I | GGNCC | 3 cut(s) | 251, 855, 1711 |
| SchI | GAGTC | 1 cut(s) | 619 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SduI | GDGCHC | 4 cut(s) | 526, 628, 904, 1167 |
| SfaNI | GCATC | 2 cut(s) | 467, 1462 |
| Sfr274I | CTCGAG | 1 cut(s) | 1347 |
| SinI | GGWCC | 1 cut(s) | 251 |
| SlaI | CTCGAG | 1 cut(s) | 1347 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 186, 923, 1441, 1572 |
| SmlI | CTYRAG | 2 cut(s) | 591, 1347 |
| SmoI | CTYRAG | 2 cut(s) | 591, 1347 |
| Sse9I | AATT | 8 cut(s) | 85, 430, 544, 603, 702, 753, 1005, 1725 |
| SseBI | AGGCCT | 1 cut(s) | 19 |
| SsiI | CCGC | 2 cut(s) | 152, 249 |
| SspI | AATATT | 2 cut(s) | 840, 1561 |
| SspMI | CTAG | 4 cut(s) | 345, 501, 506, 621 |
| SstI | GAGCTC | 1 cut(s) | 628 |
| StuI | AGGCCT | 1 cut(s) | 19 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| StyI | CCWWGG | 1 cut(s) | 20 |
| TaaI | ACNGT | 7 cut(s) | 310, 618, 1052, 1285, 1294, 1511, 1551 |
| TaiI | ACGT | 2 cut(s) | 322, 673 |
| TaqI | TCGA | 5 cut(s) | 42, 673, 1003, 1348, 1630 |
| TasI | AATT | 8 cut(s) | 85, 430, 544, 603, 702, 753, 1005, 1725 |
| TatI | WGTACW | 1 cut(s) | 1716 |
| TfiI | GAWTC | 2 cut(s) | 1353, 1596 |
| Tru1I | TTAA | 4 cut(s) | 564, 705, 1394, 1458 |
| Tru9I | TTAA | 4 cut(s) | 564, 705, 1394, 1458 |
| TscAI | CASTG | 5 cut(s) | 526, 880, 1057, 1288, 1297 |
| TseFI | GTSAC | 3 cut(s) | 190, 409, 925 |
| TseI | GCWGC | 2 cut(s) | 401, 804 |
| Tsp45I | GTSAC | 3 cut(s) | 190, 409, 925 |
| TspDTI | ATGAA | 3 cut(s) | 155, 500, 1378 |
| TspGWI | ACGGA | 2 cut(s) | 243, 1240 |
| TspRI | CASTG | 5 cut(s) | 526, 880, 1057, 1288, 1297 |
| VpaK11BI | GGWCC | 1 cut(s) | 251 |
| VspI | ATTAAT | 1 cut(s) | 1458 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1347 |
| XapI | RAATTY | 3 cut(s) | 430, 1005, 1725 |
| XbaI | TCTAGA | 1 cut(s) | 620 |
| XceI | RCATGY | 1 cut(s) | 185 |
| XhoI | CTCGAG | 1 cut(s) | 1347 |
| XmiI | GTMKAC | 3 cut(s) | 712, 1630, 1689 |
| XspI | CTAG | 4 cut(s) | 345, 501, 506, 621 |