Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 379 |
| AccI | GTMKAC | 2 cut(s) | 392, 554 |
| AciI | CCGC | 1 cut(s) | 240 |
| AclWI | GGATC | 1 cut(s) | 512 |
| AcoI | YGGCCR | 1 cut(s) | 850 |
| AcsI | RAATTY | 2 cut(s) | 330, 441 |
| AcvI | CACGTG | 1 cut(s) | 769 |
| AcyI | GRCGYC | 1 cut(s) | 376 |
| AfaI | GTAC | 1 cut(s) | 609 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 75, 241 |
| AgsI | TTSAA | 5 cut(s) | 228, 251, 304, 471, 697 |
| AjnI | CCWGG | 1 cut(s) | 873 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 202, 234 |
| AluBI | AGCT | 3 cut(s) | 218, 466, 653 |
| AluI | AGCT | 3 cut(s) | 218, 466, 653 |
| Alw21I | GWGCWC | 1 cut(s) | 595 |
| Alw26I | GTCTC | 3 cut(s) | 115, 367, 755 |
| AlwI | GGATC | 1 cut(s) | 512 |
| AoxI | GGCC | 2 cut(s) | 96, 850 |
| ApeKI | GCWGC | 3 cut(s) | 198, 434, 870 |
| ApoI | RAATTY | 2 cut(s) | 330, 441 |
| AspLEI | GCGC | 1 cut(s) | 843 |
| AsuII | TTCGAA | 1 cut(s) | 328 |
| BbrPI | CACGTG | 1 cut(s) | 769 |
| Bbv12I | GWGCWC | 1 cut(s) | 595 |
| BbvI | GCAGC | 3 cut(s) | 210, 421, 882 |
| BccI | CCATC | 3 cut(s) | 136, 305, 631 |
| BceAI | ACGGC | 1 cut(s) | 545 |
| BciT130I | CCWGG | 1 cut(s) | 875 |
| BcoDI | GTCTC | 3 cut(s) | 115, 367, 755 |
| BfaI | CTAG | 4 cut(s) | 438, 650, 684, 689 |
| BfmI | CTRYAG | 1 cut(s) | 555 |
| BfoI | RGCGCY | 1 cut(s) | 844 |
| BisI | GCNGC | 3 cut(s) | 199, 435, 871 |
| BlsI | GCNGC | 3 cut(s) | 200, 436, 872 |
| Bme1390I | CCNGG | 1 cut(s) | 875 |
| BmrFI | CCNGG | 1 cut(s) | 875 |
| BmsI | GCATC | 1 cut(s) | 485 |
| Bpu14I | TTCGAA | 1 cut(s) | 328 |
| BpuEI | CTTGAG | 1 cut(s) | 796 |
| Bsa29I | ATCGAT | 1 cut(s) | 131 |
| BsaAI | YACGTR | 1 cut(s) | 769 |
| BsaBI | GATNNNNATC | 2 cut(s) | 522, 784 |
| BsaHI | GRCGYC | 1 cut(s) | 376 |
| BsaJI | CCNNGG | 2 cut(s) | 235, 561 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 75, 241 |
| Bse1I | ACTGG | 1 cut(s) | 853 |
| Bse8I | GATNNNNATC | 2 cut(s) | 522, 784 |
| BseBI | CCWGG | 1 cut(s) | 875 |
| BseCI | ATCGAT | 1 cut(s) | 131 |
| BseDI | CCNNGG | 2 cut(s) | 235, 561 |
| BseGI | GGATG | 1 cut(s) | 185 |
| BseJI | GATNNNNATC | 2 cut(s) | 522, 784 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 75, 241 |
| BseNI | ACTGG | 1 cut(s) | 853 |
| BseRI | GAGGAG | 1 cut(s) | 773 |
| BseXI | GCAGC | 3 cut(s) | 210, 421, 882 |
| BseYI | CCCAGC | 1 cut(s) | 348 |
| BshFI | GGCC | 2 cut(s) | 98, 852 |
| BshVI | ATCGAT | 1 cut(s) | 131 |
| BsiHKAI | GWGCWC | 1 cut(s) | 595 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 75, 241 |
| BsmAI | GTCTC | 3 cut(s) | 115, 367, 755 |
| BsmBI | CGTCTC | 1 cut(s) | 367 |
| BsnI | GGCC | 2 cut(s) | 98, 852 |
| Bsp119I | TTCGAA | 1 cut(s) | 328 |
| Bsp1286I | GDGCHC | 1 cut(s) | 595 |
| Bsp143I | GATC | 7 cut(s) | 336, 447, 517, 601, 670, 779, 785 |
| BspACI | CCGC | 1 cut(s) | 240 |
| BspANI | GGCC | 2 cut(s) | 98, 852 |
| BspDI | ATCGAT | 1 cut(s) | 131 |
| BspPI | GGATC | 1 cut(s) | 512 |
| BspT104I | TTCGAA | 1 cut(s) | 328 |
| BsrI | ACTGG | 1 cut(s) | 853 |
| BssECI | CCNNGG | 2 cut(s) | 235, 561 |
| BssMI | GATC | 7 cut(s) | 336, 447, 517, 601, 670, 779, 785 |
| BssNI | GRCGYC | 1 cut(s) | 376 |
| BssT1I | CCWWGG | 1 cut(s) | 235 |
| Bst2UI | CCWGG | 1 cut(s) | 875 |
| Bst4CI | ACNGT | 6 cut(s) | 13, 26, 38, 263, 500, 885 |
| Bst6I | CTCTTC | 1 cut(s) | 365 |
| BstACI | GRCGYC | 1 cut(s) | 376 |
| BstBAI | YACGTR | 1 cut(s) | 769 |
| BstBI | TTCGAA | 1 cut(s) | 328 |
| BstDEI | CTNAG | 1 cut(s) | 654 |
| BstDSI | CCRYGG | 1 cut(s) | 561 |
| BstF5I | GGATG | 1 cut(s) | 185 |
| BstH2I | RGCGCY | 1 cut(s) | 844 |
| BstHHI | GCGC | 1 cut(s) | 843 |
| BstKTI | GATC | 7 cut(s) | 339, 450, 520, 604, 673, 782, 788 |
| BstMAI | GTCTC | 3 cut(s) | 115, 367, 755 |
| BstMBI | GATC | 7 cut(s) | 336, 447, 517, 601, 670, 779, 785 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 849 |
| BstNI | CCWGG | 1 cut(s) | 875 |
| BstSCI | CCNGG | 1 cut(s) | 873 |
| BstSFI | CTRYAG | 1 cut(s) | 555 |
| BstV1I | GCAGC | 3 cut(s) | 210, 421, 882 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 387 |
| Bsu15I | ATCGAT | 1 cut(s) | 131 |
| BsuRI | GGCC | 2 cut(s) | 98, 852 |
| BsuTUI | ATCGAT | 1 cut(s) | 131 |
| BtgI | CCRYGG | 1 cut(s) | 561 |
| BtsCI | GGATG | 1 cut(s) | 185 |
| BtsI | GCAGTG | 1 cut(s) | 56 |
| BtsIMutI | CAGTG | 4 cut(s) | 22, 34, 56, 496 |
| CfoI | GCGC | 1 cut(s) | 843 |
| ClaI | ATCGAT | 1 cut(s) | 131 |
| CseI | GACGC | 1 cut(s) | 812 |
| Csp6I | GTAC | 1 cut(s) | 608 |
| CviJI | RGCY | 9 cut(s) | 98, 201, 218, 466, 560, 622, 653, 852, 873 |
| CviKI_1 | RGCY | 9 cut(s) | 98, 201, 218, 466, 560, 622, 653, 852, 873 |
| CviQI | GTAC | 1 cut(s) | 608 |
| DdeI | CTNAG | 1 cut(s) | 654 |
| DpnI | GATC | 7 cut(s) | 338, 449, 519, 603, 672, 781, 787 |
| DpnII | GATC | 7 cut(s) | 336, 447, 517, 601, 670, 779, 785 |
| EaeI | YGGCCR | 1 cut(s) | 850 |
| Eam1104I | CTCTTC | 1 cut(s) | 365 |
| EarI | CTCTTC | 1 cut(s) | 365 |
| Eco130I | CCWWGG | 1 cut(s) | 235 |
| Eco72I | CACGTG | 1 cut(s) | 769 |
| EcoRII | CCWGG | 1 cut(s) | 873 |
| EcoT14I | CCWWGG | 1 cut(s) | 235 |
| ErhI | CCWWGG | 1 cut(s) | 235 |
| Esp3I | CGTCTC | 1 cut(s) | 367 |
| FauI | CCCGC | 1 cut(s) | 233 |
| FauNDI | CATATG | 2 cut(s) | 707, 749 |
| FblI | GTMKAC | 2 cut(s) | 392, 554 |
| Fnu4HI | GCNGC | 3 cut(s) | 199, 435, 871 |
| FokI | GGATG | 1 cut(s) | 172 |
| Fsp4HI | GCNGC | 3 cut(s) | 199, 435, 871 |
| FspBI | CTAG | 4 cut(s) | 438, 650, 684, 689 |
| GlaI | GCGC | 1 cut(s) | 842 |
| GluI | GCNGC | 3 cut(s) | 199, 435, 871 |
| GsaI | CCCAGC | 1 cut(s) | 352 |
| HaeII | RGCGCY | 1 cut(s) | 844 |
| HaeIII | GGCC | 2 cut(s) | 98, 852 |
| HgaI | GACGC | 1 cut(s) | 812 |
| HhaI | GCGC | 1 cut(s) | 843 |
| Hin1I | GRCGYC | 1 cut(s) | 376 |
| Hin6I | GCGC | 1 cut(s) | 841 |
| HinP1I | GCGC | 1 cut(s) | 841 |
| HincII | GTYRAC | 2 cut(s) | 393, 574 |
| HindII | GTYRAC | 2 cut(s) | 393, 574 |
| HindIII | AAGCTT | 1 cut(s) | 464 |
| HinfI | GANTC | 4 cut(s) | 182, 728, 763, 793 |
| Hpy166II | GTNNAC | 6 cut(s) | 393, 484, 555, 574, 772, 818 |
| Hpy188I | TCNGA | 4 cut(s) | 151, 401, 424, 643 |
| Hpy188III | TCNNGA | 6 cut(s) | 118, 256, 301, 527, 684, 783 |
| Hpy8I | GTNNAC | 6 cut(s) | 393, 484, 555, 574, 772, 818 |
| HpyAV | CCTTC | 1 cut(s) | 69 |
| HpyCH4III | ACNGT | 6 cut(s) | 13, 26, 38, 263, 500, 885 |
| HpyCH4IV | ACGT | 3 cut(s) | 376, 589, 768 |
| HpyCH4V | TGCA | 1 cut(s) | 870 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 849 |
| HpyF3I | CTNAG | 1 cut(s) | 654 |
| HpySE526I | ACGT | 3 cut(s) | 376, 589, 768 |
| Hsp92I | GRCGYC | 1 cut(s) | 376 |
| HspAI | GCGC | 1 cut(s) | 841 |
| Kzo9I | GATC | 7 cut(s) | 336, 447, 517, 601, 670, 779, 785 |
| LmnI | GCTCC | 1 cut(s) | 401 |
| LpnPI | CCDG | 7 cut(s) | 59, 334, 590, 725, 834, 834, 860 |
| Lsp1109I | GCAGC | 3 cut(s) | 210, 421, 882 |
| LweI | GCATC | 1 cut(s) | 485 |
| MaeI | CTAG | 4 cut(s) | 438, 650, 684, 689 |
| MaeII | ACGT | 3 cut(s) | 376, 589, 768 |
| MaeIII | GTNAC | 2 cut(s) | 500, 527 |
| MalI | GATC | 7 cut(s) | 338, 449, 519, 603, 672, 781, 787 |
| MboI | GATC | 7 cut(s) | 336, 447, 517, 601, 670, 779, 785 |
| MboII | GAAGA | 7 cut(s) | 370, 373, 376, 379, 382, 534, 625 |
| MhlI | GDGCHC | 1 cut(s) | 595 |
| MluCI | AATT | 8 cut(s) | 246, 268, 304, 330, 441, 538, 567, 666 |
| MlyI | GAGTC | 2 cut(s) | 722, 757 |
| MnlI | CCTC | 4 cut(s) | 212, 453, 503, 751 |
| MseI | TTAA | 1 cut(s) | 174 |
| MspR9I | CCNGG | 1 cut(s) | 875 |
| MvaI | CCWGG | 1 cut(s) | 875 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 849 |
| NdeI | CATATG | 2 cut(s) | 707, 749 |
| NdeII | GATC | 7 cut(s) | 336, 447, 517, 601, 670, 779, 785 |
| NmeAIII | GCCGAG | 1 cut(s) | 124 |
| NmuCI | GTSAC | 1 cut(s) | 527 |
| NspV | TTCGAA | 1 cut(s) | 328 |
| PfeI | GAWTC | 2 cut(s) | 182, 793 |
| PkrI | GCNGC | 3 cut(s) | 200, 436, 872 |
| PleI | GAGTC | 2 cut(s) | 722, 757 |
| PmaCI | CACGTG | 1 cut(s) | 769 |
| PmlI | CACGTG | 1 cut(s) | 769 |
| PpsI | GAGTC | 2 cut(s) | 722, 757 |
| Ppu21I | YACGTR | 1 cut(s) | 769 |
| Psp6I | CCWGG | 1 cut(s) | 873 |
| PspCI | CACGTG | 1 cut(s) | 769 |
| PspFI | CCCAGC | 1 cut(s) | 348 |
| PspGI | CCWGG | 1 cut(s) | 873 |
| RsaI | GTAC | 1 cut(s) | 609 |
| RsaNI | GTAC | 1 cut(s) | 608 |
| SalI | GTCGAC | 1 cut(s) | 391 |
| SaqAI | TTAA | 1 cut(s) | 174 |
| SatI | GCNGC | 3 cut(s) | 199, 435, 871 |
| Sau3AI | GATC | 7 cut(s) | 336, 447, 517, 601, 670, 779, 785 |
| SchI | GAGTC | 2 cut(s) | 722, 757 |
| ScrFI | CCNGG | 1 cut(s) | 875 |
| SduI | GDGCHC | 1 cut(s) | 595 |
| SfaNI | GCATC | 1 cut(s) | 485 |
| SfcI | CTRYAG | 1 cut(s) | 555 |
| SfuI | TTCGAA | 1 cut(s) | 328 |
| SmlI | CTYRAG | 1 cut(s) | 775 |
| SmoI | CTYRAG | 1 cut(s) | 775 |
| Sse9I | AATT | 8 cut(s) | 246, 268, 304, 330, 441, 538, 567, 666 |
| SsiI | CCGC | 1 cut(s) | 240 |
| SspI | AATATT | 1 cut(s) | 279 |
| SspMI | CTAG | 4 cut(s) | 438, 650, 684, 689 |
| StyD4I | CCNGG | 1 cut(s) | 873 |
| StyI | CCWWGG | 1 cut(s) | 235 |
| TaaI | ACNGT | 6 cut(s) | 13, 26, 38, 263, 500, 885 |
| TaiI | ACGT | 3 cut(s) | 379, 592, 771 |
| TaqI | TCGA | 5 cut(s) | 131, 214, 328, 392, 450 |
| TasI | AATT | 8 cut(s) | 246, 268, 304, 330, 441, 538, 567, 666 |
| TfiI | GAWTC | 2 cut(s) | 182, 793 |
| Tru1I | TTAA | 1 cut(s) | 174 |
| Tru9I | TTAA | 1 cut(s) | 174 |
| TscAI | CASTG | 4 cut(s) | 29, 41, 56, 503 |
| TseFI | GTSAC | 1 cut(s) | 527 |
| TseI | GCWGC | 3 cut(s) | 198, 434, 870 |
| Tsp45I | GTSAC | 1 cut(s) | 527 |
| TspDTI | ATGAA | 7 cut(s) | 5, 18, 30, 174, 210, 272, 594 |
| TspGWI | ACGGA | 1 cut(s) | 100 |
| TspRI | CASTG | 4 cut(s) | 29, 41, 56, 503 |
| XapI | RAATTY | 2 cut(s) | 330, 441 |
| XbaI | TCTAGA | 1 cut(s) | 683 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 53 |
| XmiI | GTMKAC | 2 cut(s) | 392, 554 |
| XspI | CTAG | 4 cut(s) | 438, 650, 684, 689 |
| ZraI | GACGTC | 1 cut(s) | 377 |