Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 156 |
| AciI | CCGC | 3 cut(s) | 61, 462, 736 |
| AclWI | GGATC | 1 cut(s) | 81 |
| AcsI | RAATTY | 1 cut(s) | 569 |
| AcyI | GRCGYC | 1 cut(s) | 157 |
| AdeI | CACNNNGTG | 1 cut(s) | 209 |
| AfaI | GTAC | 2 cut(s) | 81, 584 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 153, 809, 829 |
| AgsI | TTSAA | 6 cut(s) | 169, 430, 500, 602, 662, 743 |
| AjnI | CCWGG | 2 cut(s) | 18, 152 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 521, 553 |
| AluBI | AGCT | 3 cut(s) | 246, 381, 624 |
| AluI | AGCT | 3 cut(s) | 246, 381, 624 |
| Alw26I | GTCTC | 1 cut(s) | 104 |
| AlwI | GGATC | 1 cut(s) | 81 |
| AoxI | GGCC | 1 cut(s) | 520 |
| ApeKI | GCWGC | 4 cut(s) | 338, 479, 621, 771 |
| ApoI | RAATTY | 1 cut(s) | 569 |
| AspA2I | CCTAGG | 1 cut(s) | 160 |
| AspLEI | GCGC | 3 cut(s) | 159, 252, 315 |
| AspS9I | GGNCC | 3 cut(s) | 366, 464, 667 |
| AvaII | GGWCC | 3 cut(s) | 366, 464, 667 |
| AvrII | CCTAGG | 1 cut(s) | 160 |
| BanI | GGYRCC | 1 cut(s) | 156 |
| BbvI | GCAGC | 4 cut(s) | 325, 491, 633, 783 |
| BceAI | ACGGC | 1 cut(s) | 629 |
| BciT130I | CCWGG | 2 cut(s) | 20, 154 |
| BciVI | GTATCC | 1 cut(s) | 26 |
| BcoDI | GTCTC | 1 cut(s) | 104 |
| BfaI | CTAG | 5 cut(s) | 77, 87, 96, 122, 161 |
| BfoI | RGCGCY | 2 cut(s) | 160, 316 |
| BfuI | GTATCC | 1 cut(s) | 26 |
| BisI | GCNGC | 4 cut(s) | 339, 480, 622, 772 |
| BlnI | CCTAGG | 1 cut(s) | 160 |
| BlsI | GCNGC | 4 cut(s) | 340, 481, 623, 773 |
| BmcAI | AGTACT | 1 cut(s) | 584 |
| Bme1390I | CCNGG | 2 cut(s) | 20, 154 |
| Bme18I | GGWCC | 3 cut(s) | 366, 464, 667 |
| BmgT120I | GGNCC | 3 cut(s) | 366, 464, 667 |
| BmiI | GGNNCC | 2 cut(s) | 158, 368 |
| BmrFI | CCNGG | 2 cut(s) | 20, 154 |
| BmrI | ACTGGG | 1 cut(s) | 819 |
| BmuI | ACTGGG | 1 cut(s) | 819 |
| BoxI | GACNNNNGTC | 1 cut(s) | 672 |
| BsaHI | GRCGYC | 1 cut(s) | 157 |
| BsaJI | CCNNGG | 2 cut(s) | 160, 407 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 153, 809, 829 |
| Bse1I | ACTGG | 1 cut(s) | 814 |
| BseBI | CCWGG | 2 cut(s) | 20, 154 |
| BseDI | CCNNGG | 2 cut(s) | 160, 407 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 153, 809, 829 |
| BseNI | ACTGG | 1 cut(s) | 814 |
| BseXI | GCAGC | 4 cut(s) | 325, 491, 633, 783 |
| BseYI | CCCAGC | 1 cut(s) | 57 |
| BsgI | GTGCAG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 522 |
| BshNI | GGYRCC | 1 cut(s) | 156 |
| BslFI | GGGAC | 3 cut(s) | 352, 368, 660 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 153, 809, 829 |
| BsmAI | GTCTC | 1 cut(s) | 104 |
| BsmFI | GGGAC | 3 cut(s) | 352, 368, 660 |
| BsmI | GAATGC | 1 cut(s) | 820 |
| BsnI | GGCC | 1 cut(s) | 522 |
| Bsp143I | GATC | 3 cut(s) | 73, 400, 435 |
| Bsp19I | CCATGG | 1 cut(s) | 407 |
| BspACI | CCGC | 3 cut(s) | 61, 462, 736 |
| BspANI | GGCC | 1 cut(s) | 522 |
| BspLI | GGNNCC | 2 cut(s) | 158, 368 |
| BspPI | GGATC | 1 cut(s) | 81 |
| BspT107I | GGYRCC | 1 cut(s) | 156 |
| BsrI | ACTGG | 1 cut(s) | 814 |
| BssECI | CCNNGG | 2 cut(s) | 160, 407 |
| BssMI | GATC | 3 cut(s) | 73, 400, 435 |
| BssNI | GRCGYC | 1 cut(s) | 157 |
| BssT1I | CCWWGG | 2 cut(s) | 160, 407 |
| Bst2UI | CCWGG | 2 cut(s) | 20, 154 |
| Bst4CI | ACNGT | 1 cut(s) | 804 |
| BstACI | GRCGYC | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 2 cut(s) | 63, 248 |
| BstDEI | CTNAG | 1 cut(s) | 586 |
| BstDSI | CCRYGG | 1 cut(s) | 407 |
| BstH2I | RGCGCY | 2 cut(s) | 160, 316 |
| BstHHI | GCGC | 3 cut(s) | 159, 252, 315 |
| BstKTI | GATC | 3 cut(s) | 76, 403, 438 |
| BstMAI | GTCTC | 1 cut(s) | 104 |
| BstMBI | GATC | 3 cut(s) | 73, 400, 435 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 321, 330, 488 |
| BstNI | CCWGG | 2 cut(s) | 20, 154 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 672 |
| BstSCI | CCNGG | 2 cut(s) | 18, 152 |
| BstV1I | GCAGC | 4 cut(s) | 325, 491, 633, 783 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| BsuI | GTATCC | 1 cut(s) | 26 |
| BsuRI | GGCC | 1 cut(s) | 522 |
| BtgI | CCRYGG | 1 cut(s) | 407 |
| BtsIMutI | CAGTG | 1 cut(s) | 807 |
| Cac8I | GCNNGC | 2 cut(s) | 63, 248 |
| CfoI | GCGC | 3 cut(s) | 159, 252, 315 |
| Cfr13I | GGNCC | 3 cut(s) | 366, 464, 667 |
| Csp6I | GTAC | 2 cut(s) | 80, 583 |
| CviAII | CATG | 5 cut(s) | 239, 363, 408, 439, 755 |
| CviJI | RGCY | 6 cut(s) | 86, 246, 381, 522, 624, 706 |
| CviKI_1 | RGCY | 6 cut(s) | 86, 246, 381, 522, 624, 706 |
| CviQI | GTAC | 2 cut(s) | 80, 583 |
| DdeI | CTNAG | 1 cut(s) | 586 |
| DinI | GGCGCC | 1 cut(s) | 158 |
| DpnI | GATC | 3 cut(s) | 75, 402, 437 |
| DpnII | GATC | 3 cut(s) | 73, 400, 435 |
| DraI | TTTAAA | 1 cut(s) | 838 |
| DraIII | CACNNNGTG | 1 cut(s) | 209 |
| EciI | GGCGGA | 1 cut(s) | 477 |
| Eco130I | CCWWGG | 2 cut(s) | 160, 407 |
| Eco47I | GGWCC | 3 cut(s) | 366, 464, 667 |
| EcoRII | CCWGG | 2 cut(s) | 18, 152 |
| EcoT14I | CCWWGG | 2 cut(s) | 160, 407 |
| EgeI | GGCGCC | 1 cut(s) | 158 |
| EheI | GGCGCC | 1 cut(s) | 158 |
| ErhI | CCWWGG | 2 cut(s) | 160, 407 |
| FaeI | CATG | 5 cut(s) | 242, 366, 411, 442, 758 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 569, 601 |
| FaqI | GGGAC | 3 cut(s) | 352, 368, 660 |
| FatI | CATG | 5 cut(s) | 238, 362, 407, 438, 754 |
| FauI | CCCGC | 1 cut(s) | 54 |
| FauNDI | CATATG | 1 cut(s) | 179 |
| Fnu4HI | GCNGC | 4 cut(s) | 339, 480, 622, 772 |
| Fsp4HI | GCNGC | 4 cut(s) | 339, 480, 622, 772 |
| FspBI | CTAG | 5 cut(s) | 77, 87, 96, 122, 161 |
| GlaI | GCGC | 3 cut(s) | 158, 251, 314 |
| GluI | GCNGC | 4 cut(s) | 339, 480, 622, 772 |
| GsaI | CCCAGC | 1 cut(s) | 61 |
| HaeII | RGCGCY | 2 cut(s) | 160, 316 |
| HaeIII | GGCC | 1 cut(s) | 522 |
| HhaI | GCGC | 3 cut(s) | 159, 252, 315 |
| Hin1I | GRCGYC | 1 cut(s) | 157 |
| Hin1II | CATG | 5 cut(s) | 242, 366, 411, 442, 758 |
| Hin6I | GCGC | 3 cut(s) | 157, 250, 313 |
| HinP1I | GCGC | 3 cut(s) | 157, 250, 313 |
| HinfI | GANTC | 5 cut(s) | 133, 143, 165, 200, 662 |
| Hpy166II | GTNNAC | 2 cut(s) | 46, 807 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 451, 667 |
| Hpy188III | TCNNGA | 1 cut(s) | 25 |
| Hpy8I | GTNNAC | 2 cut(s) | 46, 807 |
| HpyAV | CCTTC | 2 cut(s) | 465, 571 |
| HpyCH4III | ACNGT | 1 cut(s) | 804 |
| HpyCH4V | TGCA | 5 cut(s) | 263, 341, 479, 610, 771 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 321, 330, 488 |
| HpyF3I | CTNAG | 1 cut(s) | 586 |
| Hsp92I | GRCGYC | 1 cut(s) | 157 |
| Hsp92II | CATG | 5 cut(s) | 242, 366, 411, 442, 758 |
| HspAI | GCGC | 3 cut(s) | 157, 250, 313 |
| KasI | GGCGCC | 1 cut(s) | 156 |
| Kzo9I | GATC | 3 cut(s) | 73, 400, 435 |
| Lsp1109I | GCAGC | 4 cut(s) | 325, 491, 633, 783 |
| MaeI | CTAG | 5 cut(s) | 77, 87, 96, 122, 161 |
| MaeIII | GTNAC | 3 cut(s) | 211, 548, 563 |
| MalI | GATC | 3 cut(s) | 75, 402, 437 |
| MboI | GATC | 3 cut(s) | 73, 400, 435 |
| MboII | GAAGA | 2 cut(s) | 142, 755 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MluCI | AATT | 4 cut(s) | 28, 138, 282, 569 |
| Mly113I | GGCGCC | 1 cut(s) | 157 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MnlI | CCTC | 6 cut(s) | 59, 119, 533, 587, 689, 696 |
| MseI | TTAA | 4 cut(s) | 413, 651, 723, 837 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspA1I | CMGCKG | 1 cut(s) | 61 |
| MspR9I | CCNGG | 2 cut(s) | 20, 154 |
| Mva1269I | GAATGC | 1 cut(s) | 820 |
| MvaI | CCWGG | 2 cut(s) | 20, 154 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 321, 330, 488 |
| NarI | GGCGCC | 1 cut(s) | 157 |
| NcoI | CCATGG | 1 cut(s) | 407 |
| NdeI | CATATG | 1 cut(s) | 179 |
| NdeII | GATC | 3 cut(s) | 73, 400, 435 |
| NlaIII | CATG | 5 cut(s) | 242, 366, 411, 442, 758 |
| NlaIV | GGNNCC | 2 cut(s) | 158, 368 |
| NmuCI | GTSAC | 1 cut(s) | 548 |
| PctI | GAATGC | 1 cut(s) | 820 |
| PfeI | GAWTC | 4 cut(s) | 133, 165, 200, 662 |
| PflFI | GACNNNGTC | 1 cut(s) | 364 |
| PkrI | GCNGC | 4 cut(s) | 340, 481, 623, 773 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PluTI | GGCGCC | 1 cut(s) | 160 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| PshAI | GACNNNNGTC | 1 cut(s) | 672 |
| Psp6I | CCWGG | 2 cut(s) | 18, 152 |
| PspFI | CCCAGC | 1 cut(s) | 57 |
| PspGI | CCWGG | 2 cut(s) | 18, 152 |
| PspN4I | GGNNCC | 2 cut(s) | 158, 368 |
| PspPI | GGNCC | 3 cut(s) | 366, 464, 667 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| PsyI | GACNNNGTC | 1 cut(s) | 364 |
| RsaI | GTAC | 2 cut(s) | 81, 584 |
| RsaNI | GTAC | 2 cut(s) | 80, 583 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SaqAI | TTAA | 4 cut(s) | 413, 651, 723, 837 |
| SatI | GCNGC | 4 cut(s) | 339, 480, 622, 772 |
| Sau3AI | GATC | 3 cut(s) | 73, 400, 435 |
| Sau96I | GGNCC | 3 cut(s) | 366, 464, 667 |
| ScaI | AGTACT | 1 cut(s) | 584 |
| SchI | GAGTC | 1 cut(s) | 137 |
| ScrFI | CCNGG | 2 cut(s) | 20, 154 |
| SetI | ASST | 8 cut(s) | 51, 97, 248, 383, 487, 497, 626, 723 |
| SfoI | GGCGCC | 1 cut(s) | 158 |
| SinI | GGWCC | 3 cut(s) | 366, 464, 667 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| Sse9I | AATT | 4 cut(s) | 28, 138, 282, 569 |
| SsiI | CCGC | 3 cut(s) | 61, 462, 736 |
| SspDI | GGCGCC | 1 cut(s) | 156 |
| SspMI | CTAG | 5 cut(s) | 77, 87, 96, 122, 161 |
| StyD4I | CCNGG | 2 cut(s) | 18, 152 |
| StyI | CCWWGG | 2 cut(s) | 160, 407 |
| TaaI | ACNGT | 1 cut(s) | 804 |
| TasI | AATT | 4 cut(s) | 28, 138, 282, 569 |
| TatI | WGTACW | 2 cut(s) | 79, 582 |
| TfiI | GAWTC | 4 cut(s) | 133, 165, 200, 662 |
| Tru1I | TTAA | 4 cut(s) | 413, 651, 723, 837 |
| Tru9I | TTAA | 4 cut(s) | 413, 651, 723, 837 |
| TscAI | CASTG | 1 cut(s) | 814 |
| TseFI | GTSAC | 1 cut(s) | 548 |
| TseI | GCWGC | 4 cut(s) | 338, 479, 621, 771 |
| Tsp45I | GTSAC | 1 cut(s) | 548 |
| TspDTI | ATGAA | 2 cut(s) | 365, 529 |
| TspGWI | ACGGA | 1 cut(s) | 812 |
| TspRI | CASTG | 1 cut(s) | 814 |
| Tth111I | GACNNNGTC | 1 cut(s) | 364 |
| VpaK11BI | GGWCC | 3 cut(s) | 366, 464, 667 |
| XapI | RAATTY | 1 cut(s) | 569 |
| XmaJI | CCTAGG | 1 cut(s) | 160 |
| XspI | CTAG | 5 cut(s) | 77, 87, 96, 122, 161 |
| ZrmI | AGTACT | 1 cut(s) | 584 |