ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 154, 510 |
| AccII | CGCG | 1 cut(s) | 36 |
| AccIII | TCCGGA | 1 cut(s) | 249 |
| AciI | CCGC | 2 cut(s) | 36, 446 |
| AcsI | RAATTY | 1 cut(s) | 432 |
| AcuI | CTGAAG | 1 cut(s) | 321 |
| AfaI | GTAC | 1 cut(s) | 606 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 726 |
| AgsI | TTSAA | 4 cut(s) | 13, 348, 655, 740 |
| AjnI | CCWGG | 2 cut(s) | 404, 633 |
| AluBI | AGCT | 6 cut(s) | 197, 290, 394, 479, 503, 593 |
| AluI | AGCT | 6 cut(s) | 197, 290, 394, 479, 503, 593 |
| Alw26I | GTCTC | 3 cut(s) | 47, 215, 251 |
| Aor13HI | TCCGGA | 1 cut(s) | 249 |
| ApeKI | GCWGC | 3 cut(s) | 4, 386, 751 |
| ApoI | RAATTY | 1 cut(s) | 432 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 518, 550 |
| AspS9I | GGNCC | 1 cut(s) | 461 |
| AsuC2I | CCSGG | 1 cut(s) | 322 |
| AsuHPI | GGTGA | 2 cut(s) | 177, 310 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| BbvI | GCAGC | 3 cut(s) | 16, 398, 738 |
| BccI | CCATC | 2 cut(s) | 164, 517 |
| BciT130I | CCWGG | 2 cut(s) | 406, 635 |
| BciVI | GTATCC | 1 cut(s) | 633 |
| BcnI | CCSGG | 1 cut(s) | 322 |
| BcoDI | GTCTC | 3 cut(s) | 47, 215, 251 |
| BfaI | CTAG | 6 cut(s) | 96, 122, 383, 410, 468, 790 |
| BfuI | GTATCC | 1 cut(s) | 633 |
| BisI | GCNGC | 3 cut(s) | 5, 387, 752 |
| BlsI | GCNGC | 3 cut(s) | 6, 388, 753 |
| Bme1390I | CCNGG | 3 cut(s) | 322, 406, 635 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmgT120I | GGNCC | 1 cut(s) | 461 |
| BmrFI | CCNGG | 3 cut(s) | 322, 406, 635 |
| BmsI | GCATC | 3 cut(s) | 52, 108, 265 |
| BpmI | CTGGAG | 2 cut(s) | 244, 489 |
| BpuMI | CCSGG | 1 cut(s) | 322 |
| BsaAI | YACGTR | 1 cut(s) | 363 |
| BsaI | GGTCTC | 1 cut(s) | 215 |
| BsaJI | CCNNGG | 2 cut(s) | 404, 633 |
| BsaWI | WCCGGW | 2 cut(s) | 238, 249 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 726 |
| Bse1I | ACTGG | 1 cut(s) | 506 |
| BseAI | TCCGGA | 1 cut(s) | 249 |
| BseBI | CCWGG | 2 cut(s) | 406, 635 |
| BseDI | CCNNGG | 2 cut(s) | 404, 633 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 726 |
| BseMII | CTCAG | 1 cut(s) | 494 |
| BseNI | ACTGG | 1 cut(s) | 506 |
| BseXI | GCAGC | 3 cut(s) | 16, 398, 738 |
| BseYI | CCCAGC | 1 cut(s) | 416 |
| BsgI | GTGCAG | 1 cut(s) | 737 |
| Bsh1236I | CGCG | 1 cut(s) | 36 |
| BsiSI | CCGG | 4 cut(s) | 239, 250, 321, 464 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 726 |
| BsmAI | GTCTC | 3 cut(s) | 47, 215, 251 |
| BsmBI | CGTCTC | 2 cut(s) | 47, 251 |
| Bso31I | GGTCTC | 1 cut(s) | 215 |
| Bsp13I | TCCGGA | 1 cut(s) | 249 |
| Bsp1407I | TGTACA | 1 cut(s) | 604 |
| Bsp143I | GATC | 1 cut(s) | 664 |
| BspACI | CCGC | 2 cut(s) | 36, 446 |
| BspCNI | CTCAG | 1 cut(s) | 493 |
| BspEI | TCCGGA | 1 cut(s) | 249 |
| BspFNI | CGCG | 1 cut(s) | 36 |
| BspTNI | GGTCTC | 1 cut(s) | 215 |
| BsrGI | TGTACA | 1 cut(s) | 604 |
| BsrI | ACTGG | 1 cut(s) | 506 |
| BssECI | CCNNGG | 2 cut(s) | 404, 633 |
| BssMI | GATC | 1 cut(s) | 664 |
| Bst2UI | CCWGG | 2 cut(s) | 406, 635 |
| Bst4CI | ACNGT | 3 cut(s) | 515, 609, 729 |
| Bst6I | CTCTTC | 1 cut(s) | 224 |
| BstAUI | TGTACA | 1 cut(s) | 604 |
| BstBAI | YACGTR | 1 cut(s) | 363 |
| BstDEI | CTNAG | 1 cut(s) | 480 |
| BstFNI | CGCG | 1 cut(s) | 36 |
| BstKTI | GATC | 1 cut(s) | 667 |
| BstMAI | GTCTC | 3 cut(s) | 47, 215, 251 |
| BstMBI | GATC | 1 cut(s) | 664 |
| BstNI | CCWGG | 2 cut(s) | 406, 635 |
| BstSCI | CCNGG | 3 cut(s) | 320, 404, 633 |
| BstUI | CGCG | 1 cut(s) | 36 |
| BstV1I | GCAGC | 3 cut(s) | 16, 398, 738 |
| BsuI | GTATCC | 1 cut(s) | 633 |
| BtsIMutI | CAGTG | 1 cut(s) | 614 |
| Cfr13I | GGNCC | 1 cut(s) | 461 |
| CseI | GACGC | 2 cut(s) | 64, 233 |
| Csp6I | GTAC | 1 cut(s) | 605 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 439, 474 |
| CviAII | CATG | 2 cut(s) | 24, 529 |
| CviQI | GTAC | 1 cut(s) | 605 |
| DdeI | CTNAG | 1 cut(s) | 480 |
| DpnI | GATC | 1 cut(s) | 666 |
| DpnII | GATC | 1 cut(s) | 664 |
| Eam1104I | CTCTTC | 1 cut(s) | 224 |
| EarI | CTCTTC | 1 cut(s) | 224 |
| EciI | GGCGGA | 1 cut(s) | 461 |
| Eco31I | GGTCTC | 1 cut(s) | 215 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco57I | CTGAAG | 1 cut(s) | 321 |
| EcoRII | CCWGG | 2 cut(s) | 404, 633 |
| Esp3I | CGTCTC | 2 cut(s) | 47, 251 |
| FaeI | CATG | 2 cut(s) | 27, 532 |
| FaiI | YATR | 7 cut(s) | 25, 50, 161, 270, 330, 439, 530 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 51, 83 |
| FatI | CATG | 2 cut(s) | 23, 528 |
| FblI | GTMKAC | 2 cut(s) | 154, 510 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 387, 752 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 387, 752 |
| FspBI | CTAG | 6 cut(s) | 96, 122, 383, 410, 468, 790 |
| GluI | GCNGC | 3 cut(s) | 5, 387, 752 |
| GsaI | CCCAGC | 1 cut(s) | 420 |
| GsuI | CTGGAG | 2 cut(s) | 244, 489 |
| HapII | CCGG | 4 cut(s) | 239, 250, 321, 464 |
| HgaI | GACGC | 2 cut(s) | 64, 233 |
| Hin1II | CATG | 2 cut(s) | 27, 532 |
| HincII | GTYRAC | 2 cut(s) | 155, 511 |
| HindII | GTYRAC | 2 cut(s) | 155, 511 |
| HindIII | AAGCTT | 1 cut(s) | 591 |
| HinfI | GANTC | 5 cut(s) | 9, 235, 315, 367, 549 |
| HpaII | CCGG | 4 cut(s) | 239, 250, 321, 464 |
| HphI | GGTGA | 2 cut(s) | 177, 310 |
| Hpy166II | GTNNAC | 6 cut(s) | 155, 185, 511, 518, 570, 674 |
| Hpy188I | TCNGA | 5 cut(s) | 115, 301, 483, 600, 664 |
| Hpy188III | TCNNGA | 5 cut(s) | 212, 223, 250, 546, 695 |
| Hpy8I | GTNNAC | 6 cut(s) | 155, 185, 511, 518, 570, 674 |
| Hpy99I | CGWCG | 2 cut(s) | 156, 159 |
| HpyAV | CCTTC | 1 cut(s) | 296 |
| HpyCH4III | ACNGT | 3 cut(s) | 515, 609, 729 |
| HpyCH4IV | ACGT | 3 cut(s) | 157, 362, 712 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 263, 278, 754, 781 |
| HpyF3I | CTNAG | 1 cut(s) | 480 |
| HpySE526I | ACGT | 3 cut(s) | 157, 362, 712 |
| Hsp92II | CATG | 2 cut(s) | 27, 532 |
| Kpn2I | TCCGGA | 1 cut(s) | 249 |
| Kzo9I | GATC | 1 cut(s) | 664 |
| LmnI | GCTCC | 2 cut(s) | 287, 508 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 398, 738 |
| LweI | GCATC | 3 cut(s) | 52, 108, 265 |
| MaeI | CTAG | 6 cut(s) | 96, 122, 383, 410, 468, 790 |
| MaeII | ACGT | 3 cut(s) | 157, 362, 712 |
| MaeIII | GTNAC | 1 cut(s) | 699 |
| MalI | GATC | 1 cut(s) | 666 |
| MboI | GATC | 1 cut(s) | 664 |
| MboII | GAAGA | 2 cut(s) | 211, 752 |
| MluCI | AATT | 3 cut(s) | 28, 253, 432 |
| MnlI | CCTC | 5 cut(s) | 139, 219, 274, 606, 679 |
| MroI | TCCGGA | 1 cut(s) | 249 |
| MseI | TTAA | 4 cut(s) | 42, 374, 426, 690 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspI | CCGG | 4 cut(s) | 239, 250, 321, 464 |
| MspR9I | CCNGG | 3 cut(s) | 322, 406, 635 |
| MvaI | CCWGG | 2 cut(s) | 406, 635 |
| MvnI | CGCG | 1 cut(s) | 36 |
| NciI | CCSGG | 1 cut(s) | 322 |
| NdeII | GATC | 1 cut(s) | 664 |
| NlaIII | CATG | 2 cut(s) | 27, 532 |
| PfeI | GAWTC | 5 cut(s) | 9, 235, 315, 367, 549 |
| PkrI | GCNGC | 3 cut(s) | 6, 388, 753 |
| Ppu21I | YACGTR | 1 cut(s) | 363 |
| Psp6I | CCWGG | 2 cut(s) | 404, 633 |
| PspFI | CCCAGC | 1 cut(s) | 416 |
| PspGI | CCWGG | 2 cut(s) | 404, 633 |
| PspPI | GGNCC | 1 cut(s) | 461 |
| RsaI | GTAC | 1 cut(s) | 606 |
| RsaNI | GTAC | 1 cut(s) | 605 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SalI | GTCGAC | 2 cut(s) | 153, 509 |
| SaqAI | TTAA | 4 cut(s) | 42, 374, 426, 690 |
| SatI | GCNGC | 3 cut(s) | 5, 387, 752 |
| Sau3AI | GATC | 1 cut(s) | 664 |
| Sau96I | GGNCC | 1 cut(s) | 461 |
| ScrFI | CCNGG | 3 cut(s) | 322, 406, 635 |
| SfaNI | GCATC | 3 cut(s) | 52, 108, 265 |
| SgrDI | CGTCGACG | 1 cut(s) | 153 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| Sse9I | AATT | 3 cut(s) | 28, 253, 432 |
| SsiI | CCGC | 2 cut(s) | 36, 446 |
| SspI | AATATT | 3 cut(s) | 76, 358, 775 |
| SspMI | CTAG | 6 cut(s) | 96, 122, 383, 410, 468, 790 |
| StyD4I | CCNGG | 3 cut(s) | 320, 404, 633 |
| TaaI | ACNGT | 3 cut(s) | 515, 609, 729 |
| TaiI | ACGT | 3 cut(s) | 160, 365, 715 |
| TaqI | TCGA | 7 cut(s) | 154, 213, 313, 496, 510, 547, 684 |
| TasI | AATT | 3 cut(s) | 28, 253, 432 |
| TatI | WGTACW | 1 cut(s) | 604 |
| TfiI | GAWTC | 5 cut(s) | 9, 235, 315, 367, 549 |
| Tru1I | TTAA | 4 cut(s) | 42, 374, 426, 690 |
| Tru9I | TTAA | 4 cut(s) | 42, 374, 426, 690 |
| TscAI | CASTG | 1 cut(s) | 614 |
| TseI | GCWGC | 3 cut(s) | 4, 386, 751 |
| TspDTI | ATGAA | 1 cut(s) | 444 |
| TspRI | CASTG | 1 cut(s) | 614 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XapI | RAATTY | 1 cut(s) | 432 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 764 |
| XmiI | GTMKAC | 2 cut(s) | 154, 510 |
| XspI | CTAG | 6 cut(s) | 96, 122, 383, 410, 468, 790 |