ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 224 - 417 | 3.8e-40 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 494 - 729 | 3.2e-71 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 532 - 726 | 3e-41 | Terpene synthase family 2, C-terminal metal binding |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1005 |
| AccB1I | GGYRCC | 2 cut(s) | 977, 1879 |
| AciI | CCGC | 1 cut(s) | 1573 |
| AclWI | GGATC | 1 cut(s) | 1028 |
| AcoI | YGGCCR | 1 cut(s) | 2106 |
| AcsI | RAATTY | 5 cut(s) | 232, 436, 520, 1496, 2000 |
| AcuI | CTGAAG | 7 cut(s) | 429, 1109, 1110, 1662, 1868, 2134, 2157 |
| AcyI | GRCGYC | 1 cut(s) | 2038 |
| AfaI | GTAC | 3 cut(s) | 692, 918, 1339 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 545, 856, 1399, 2067, 2181 |
| AflIII | ACRYGT | 1 cut(s) | 2256 |
| AhlI | ACTAGT | 2 cut(s) | 1651, 2200 |
| AjiI | CACGTC | 1 cut(s) | 1810 |
| AjnI | CCWGG | 1 cut(s) | 236 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 524, 556 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 798, 830 |
| Alw21I | GWGCWC | 3 cut(s) | 1751, 2030, 2274 |
| Alw26I | GTCTC | 2 cut(s) | 573, 2138 |
| Alw44I | GTGCAC | 1 cut(s) | 2270 |
| AlwI | GGATC | 1 cut(s) | 1028 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 452, 939, 974 |
| Ama87I | CYCGRG | 1 cut(s) | 1448 |
| AoxI | GGCC | 3 cut(s) | 1584, 1964, 2106 |
| ApaLI | GTGCAC | 1 cut(s) | 2270 |
| ApeKI | GCWGC | 7 cut(s) | 74, 737, 740, 943, 1103, 1535, 1538 |
| ApoI | RAATTY | 5 cut(s) | 232, 436, 520, 1496, 2000 |
| AseI | ATTAAT | 1 cut(s) | 1755 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 164, 1155 |
| AspLEI | GCGC | 1 cut(s) | 1794 |
| AspS9I | GGNCC | 7 cut(s) | 220, 308, 708, 1584, 1931, 1964, 2242 |
| AsuHPI | GGTGA | 3 cut(s) | 407, 714, 743 |
| AsuII | TTCGAA | 1 cut(s) | 1998 |
| AvaI | CYCGRG | 1 cut(s) | 1448 |
| AvaII | GGWCC | 5 cut(s) | 220, 308, 708, 1931, 2242 |
| BaeGI | GKGCMC | 1 cut(s) | 2274 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1436, 1469 |
| BalI | TGGCCA | 1 cut(s) | 2108 |
| BanI | GGYRCC | 2 cut(s) | 977, 1879 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1502, 1534 |
| BbsI | GAAGAC | 5 cut(s) | 1001, 1062, 1392, 1416, 2033 |
| Bbv12I | GWGCWC | 3 cut(s) | 1751, 2030, 2274 |
| BbvI | GCAGC | 7 cut(s) | 86, 724, 727, 930, 1090, 1522, 1525 |
| BccI | CCATC | 8 cut(s) | 55, 290, 378, 449, 475, 673, 733, 2288 |
| BceAI | ACGGC | 1 cut(s) | 1799 |
| BciT130I | CCWGG | 1 cut(s) | 238 |
| BclI | TGATCA | 1 cut(s) | 1246 |
| BcoDI | GTCTC | 2 cut(s) | 573, 2138 |
| BcuI | ACTAGT | 2 cut(s) | 1651, 2200 |
| BfaI | CTAG | 6 cut(s) | 833, 1160, 1493, 1503, 1652, 2201 |
| BfmI | CTRYAG | 2 cut(s) | 944, 2076 |
| BglII | AGATCT | 1 cut(s) | 58 |
| BisI | GCNGC | 7 cut(s) | 75, 738, 741, 944, 1104, 1536, 1539 |
| BlsI | GCNGC | 7 cut(s) | 76, 739, 742, 945, 1105, 1537, 1540 |
| Bme1390I | CCNGG | 1 cut(s) | 238 |
| Bme18I | GGWCC | 5 cut(s) | 220, 308, 708, 1931, 2242 |
| BmeT110I | CYCGRG | 1 cut(s) | 1448 |
| BmgBI | CACGTC | 1 cut(s) | 1810 |
| BmgT120I | GGNCC | 7 cut(s) | 220, 308, 708, 1584, 1931, 1964, 2242 |
| BmiI | GGNNCC | 8 cut(s) | 222, 246, 309, 709, 979, 1768, 1881, 1932 |
| BmrFI | CCNGG | 1 cut(s) | 238 |
| BmrI | ACTGGG | 2 cut(s) | 682, 2313 |
| BmsI | GCATC | 8 cut(s) | 331, 331, 375, 550, 926, 961, 1249, 1558 |
| BmuI | ACTGGG | 2 cut(s) | 682, 2313 |
| BoxI | GACNNNNGTC | 1 cut(s) | 414 |
| BpiI | GAAGAC | 5 cut(s) | 1001, 1062, 1392, 1416, 2033 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 618, 650 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1968 |
| Bpu14I | TTCGAA | 1 cut(s) | 1998 |
| Bsa29I | ATCGAT | 1 cut(s) | 1430 |
| BsaBI | GATNNNNATC | 1 cut(s) | 531 |
| BsaHI | GRCGYC | 1 cut(s) | 2038 |
| BsaI | GGTCTC | 1 cut(s) | 2138 |
| BsaJI | CCNNGG | 3 cut(s) | 1075, 1781, 1926 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 545, 856, 1399, 2067, 2181 |
| Bse118I | RCCGGY | 1 cut(s) | 1882 |
| Bse1I | ACTGG | 8 cut(s) | 677, 864, 1102, 1181, 1404, 1893, 2008, 2308 |
| Bse3DI | GCAATG | 3 cut(s) | 222, 522, 2128 |
| Bse8I | GATNNNNATC | 1 cut(s) | 531 |
| BseBI | CCWGG | 1 cut(s) | 238 |
| BseCI | ATCGAT | 1 cut(s) | 1430 |
| BseDI | CCNNGG | 3 cut(s) | 1075, 1781, 1926 |
| BseGI | GGATG | 7 cut(s) | 366, 532, 958, 1141, 1261, 1690, 1897 |
| BseJI | GATNNNNATC | 1 cut(s) | 531 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 545, 856, 1399, 2067, 2181 |
| BseMI | GCAATG | 3 cut(s) | 222, 522, 2128 |
| BseMII | CTCAG | 6 cut(s) | 627, 1235, 1704, 1871, 1968, 2371 |
| BseNI | ACTGG | 8 cut(s) | 677, 864, 1102, 1181, 1404, 1893, 2008, 2308 |
| BseRI | GAGGAG | 2 cut(s) | 1994, 2197 |
| BseSI | GKGCMC | 1 cut(s) | 2274 |
| BseXI | GCAGC | 7 cut(s) | 86, 724, 727, 930, 1090, 1522, 1525 |
| BseYI | CCCAGC | 1 cut(s) | 12 |
| BsgI | GTGCAG | 1 cut(s) | 831 |
| BshFI | GGCC | 3 cut(s) | 1586, 1966, 2108 |
| BshNI | GGYRCC | 2 cut(s) | 977, 1879 |
| BshVI | ATCGAT | 1 cut(s) | 1430 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1751, 2030, 2274 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1448 |
| BsiSI | CCGG | 1 cut(s) | 1883 |
| BslFI | GGGAC | 2 cut(s) | 206, 1944 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 545, 856, 1399, 2067, 2181 |
| BsmAI | GTCTC | 2 cut(s) | 573, 2138 |
| BsmFI | GGGAC | 2 cut(s) | 206, 1944 |
| BsmI | GAATGC | 3 cut(s) | 266, 1696, 1775 |
| BsnI | GGCC | 3 cut(s) | 1586, 1966, 2108 |
| Bso31I | GGTCTC | 1 cut(s) | 2138 |
| BsoBI | CYCGRG | 1 cut(s) | 1448 |
| Bsp119I | TTCGAA | 1 cut(s) | 1998 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1751, 2030, 2274 |
| Bsp143I | GATC | 7 cut(s) | 58, 178, 886, 1033, 1246, 1671, 2349 |
| BspACI | CCGC | 1 cut(s) | 1573 |
| BspANI | GGCC | 3 cut(s) | 1586, 1966, 2108 |
| BspCNI | CTCAG | 6 cut(s) | 626, 1234, 1705, 1870, 1969, 2370 |
| BspDI | ATCGAT | 1 cut(s) | 1430 |
| BspHI | TCATGA | 2 cut(s) | 292, 684 |
| BspLI | GGNNCC | 8 cut(s) | 222, 246, 309, 709, 979, 1768, 1881, 1932 |
| BspMAI | CTGCAG | 2 cut(s) | 948, 2080 |
| BspPI | GGATC | 1 cut(s) | 1028 |
| BspQI | GCTCTTC | 2 cut(s) | 1269, 2156 |
| BspT104I | TTCGAA | 1 cut(s) | 1998 |
| BspT107I | GGYRCC | 2 cut(s) | 977, 1879 |
| BspTNI | GGTCTC | 1 cut(s) | 2138 |
| BsrDI | GCAATG | 3 cut(s) | 222, 522, 2128 |
| BsrFI | RCCGGY | 1 cut(s) | 1882 |
| BsrI | ACTGG | 8 cut(s) | 677, 864, 1102, 1181, 1404, 1893, 2008, 2308 |
| BssAI | RCCGGY | 1 cut(s) | 1882 |
| BssECI | CCNNGG | 3 cut(s) | 1075, 1781, 1926 |
| BssMI | GATC | 7 cut(s) | 58, 178, 886, 1033, 1246, 1671, 2349 |
| BssNI | GRCGYC | 1 cut(s) | 2038 |
| BssT1I | CCWWGG | 2 cut(s) | 1075, 1926 |
| Bst2UI | CCWGG | 1 cut(s) | 238 |
| Bst4CI | ACNGT | 4 cut(s) | 1061, 1523, 1609, 2326 |
| Bst6I | CTCTTC | 4 cut(s) | 1269, 1638, 2136, 2156 |
| BstACI | GRCGYC | 1 cut(s) | 2038 |
| BstBI | TTCGAA | 1 cut(s) | 1998 |
| BstC8I | GCNNGC | 7 cut(s) | 847, 941, 976, 1515, 1573, 1884, 2236 |
| BstDSI | CCRYGG | 1 cut(s) | 1781 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 543, 2065 |
| BstF5I | GGATG | 7 cut(s) | 366, 532, 958, 1141, 1261, 1690, 1897 |
| BstHHI | GCGC | 1 cut(s) | 1794 |
| BstKTI | GATC | 7 cut(s) | 61, 181, 889, 1036, 1249, 1674, 2352 |
| BstMAI | GTCTC | 2 cut(s) | 573, 2138 |
| BstMBI | GATC | 7 cut(s) | 58, 178, 886, 1033, 1246, 1671, 2349 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 212, 606, 635 |
| BstNI | CCWGG | 1 cut(s) | 238 |
| BstNSI | RCATGY | 1 cut(s) | 2260 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 414 |
| BstSCI | CCNGG | 1 cut(s) | 236 |
| BstSFI | CTRYAG | 2 cut(s) | 944, 2076 |
| BstSLI | GKGCMC | 1 cut(s) | 2274 |
| BstV1I | GCAGC | 7 cut(s) | 86, 724, 727, 930, 1090, 1522, 1525 |
| BstV2I | GAAGAC | 5 cut(s) | 1001, 1062, 1392, 1416, 2033 |
| BstX2I | RGATCY | 2 cut(s) | 58, 1033 |
| BstYI | RGATCY | 2 cut(s) | 58, 1033 |
| Bsu15I | ATCGAT | 1 cut(s) | 1430 |
| BsuRI | GGCC | 3 cut(s) | 1586, 1966, 2108 |
| BsuTUI | ATCGAT | 1 cut(s) | 1430 |
| BtgI | CCRYGG | 1 cut(s) | 1781 |
| BtgZI | GCGATG | 1 cut(s) | 397 |
| BtrI | CACGTC | 1 cut(s) | 1810 |
| BtsCI | GGATG | 7 cut(s) | 366, 532, 958, 1141, 1261, 1690, 1897 |
| BtsI | GCAGTG | 4 cut(s) | 201, 1410, 1801, 2134 |
| Cac8I | GCNNGC | 7 cut(s) | 847, 941, 976, 1515, 1573, 1884, 2236 |
| CaiI | CAGNNNCTG | 3 cut(s) | 452, 939, 974 |
| CciI | TCATGA | 2 cut(s) | 292, 684 |
| CfoI | GCGC | 1 cut(s) | 1794 |
| Cfr10I | RCCGGY | 1 cut(s) | 1882 |
| Cfr13I | GGNCC | 7 cut(s) | 220, 308, 708, 1584, 1931, 1964, 2242 |
| ClaI | ATCGAT | 1 cut(s) | 1430 |
| CseI | GACGC | 1 cut(s) | 2027 |
| Csp6I | GTAC | 3 cut(s) | 691, 917, 1338 |
| CviQI | GTAC | 3 cut(s) | 691, 917, 1338 |
| DpnI | GATC | 7 cut(s) | 60, 180, 888, 1035, 1248, 1673, 2351 |
| DpnII | GATC | 7 cut(s) | 58, 178, 886, 1033, 1246, 1671, 2349 |
| DraI | TTTAAA | 1 cut(s) | 1350 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1005 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1005 |
| EaeI | YGGCCR | 1 cut(s) | 2106 |
| Eam1104I | CTCTTC | 4 cut(s) | 1269, 1638, 2136, 2156 |
| EarI | CTCTTC | 4 cut(s) | 1269, 1638, 2136, 2156 |
| Eco130I | CCWWGG | 2 cut(s) | 1075, 1926 |
| Eco31I | GGTCTC | 1 cut(s) | 2138 |
| Eco32I | GATATC | 1 cut(s) | 1085 |
| Eco47I | GGWCC | 5 cut(s) | 220, 308, 708, 1931, 2242 |
| Eco57I | CTGAAG | 7 cut(s) | 429, 1109, 1110, 1662, 1868, 2134, 2157 |
| Eco88I | CYCGRG | 1 cut(s) | 1448 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 543, 2065 |
| EcoO109I | RGGNCCY | 4 cut(s) | 308, 708, 1964, 2242 |
| EcoRI | GAATTC | 1 cut(s) | 2000 |
| EcoRII | CCWGG | 1 cut(s) | 236 |
| EcoRV | GATATC | 1 cut(s) | 1085 |
| EcoT14I | CCWWGG | 2 cut(s) | 1075, 1926 |
| EcoT22I | ATGCAT | 3 cut(s) | 368, 1777, 1912 |
| ErhI | CCWWGG | 2 cut(s) | 1075, 1926 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2204, 2236 |
| FaqI | GGGAC | 2 cut(s) | 206, 1944 |
| FauI | CCCGC | 1 cut(s) | 1580 |
| FauNDI | CATATG | 2 cut(s) | 196, 1912 |
| FbaI | TGATCA | 1 cut(s) | 1246 |
| Fnu4HI | GCNGC | 7 cut(s) | 75, 738, 741, 944, 1104, 1536, 1539 |
| FokI | GGATG | 7 cut(s) | 353, 539, 965, 1128, 1268, 1697, 1904 |
| Fsp4HI | GCNGC | 7 cut(s) | 75, 738, 741, 944, 1104, 1536, 1539 |
| FspBI | CTAG | 6 cut(s) | 833, 1160, 1493, 1503, 1652, 2201 |
| GlaI | GCGC | 1 cut(s) | 1793 |
| GluI | GCNGC | 7 cut(s) | 75, 738, 741, 944, 1104, 1536, 1539 |
| GsaI | CCCAGC | 1 cut(s) | 16 |
| HaeIII | GGCC | 3 cut(s) | 1586, 1966, 2108 |
| HapII | CCGG | 1 cut(s) | 1883 |
| HgaI | GACGC | 1 cut(s) | 2027 |
| HhaI | GCGC | 1 cut(s) | 1794 |
| Hin1I | GRCGYC | 1 cut(s) | 2038 |
| Hin6I | GCGC | 1 cut(s) | 1792 |
| HinP1I | GCGC | 1 cut(s) | 1792 |
| HincII | GTYRAC | 1 cut(s) | 333 |
| HindII | GTYRAC | 1 cut(s) | 333 |
| HinfI | GANTC | 9 cut(s) | 431, 509, 532, 654, 999, 1151, 1703, 2072, 2298 |
| HpaI | GTTAAC | 1 cut(s) | 333 |
| HpaII | CCGG | 1 cut(s) | 1883 |
| HphI | GGTGA | 3 cut(s) | 407, 714, 743 |
| Hpy166II | GTNNAC | 4 cut(s) | 333, 917, 1657, 2272 |
| Hpy8I | GTNNAC | 4 cut(s) | 333, 917, 1657, 2272 |
| HpyCH4III | ACNGT | 4 cut(s) | 1061, 1523, 1609, 2326 |
| HpyCH4IV | ACGT | 3 cut(s) | 356, 1006, 1809 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 212, 606, 635 |
| HpySE526I | ACGT | 3 cut(s) | 356, 1006, 1809 |
| Hsp92I | GRCGYC | 1 cut(s) | 2038 |
| HspAI | GCGC | 1 cut(s) | 1792 |
| KroI | GCCGGC | 1 cut(s) | 1882 |
| KroNI | GCCGGC | 1 cut(s) | 1884 |
| Ksp22I | TGATCA | 1 cut(s) | 1246 |
| KspAI | GTTAAC | 1 cut(s) | 333 |
| Kzo9I | GATC | 7 cut(s) | 58, 178, 886, 1033, 1246, 1671, 2349 |
| LguI | GCTCTTC | 2 cut(s) | 1269, 2156 |
| LmnI | GCTCC | 2 cut(s) | 244, 1766 |
| Lsp1109I | GCAGC | 7 cut(s) | 86, 724, 727, 930, 1090, 1522, 1525 |
| LweI | GCATC | 8 cut(s) | 331, 331, 375, 550, 926, 961, 1249, 1558 |
| MaeI | CTAG | 6 cut(s) | 833, 1160, 1493, 1503, 1652, 2201 |
| MaeII | ACGT | 3 cut(s) | 356, 1006, 1809 |
| MaeIII | GTNAC | 6 cut(s) | 357, 663, 1523, 1798, 2098, 2309 |
| MalI | GATC | 7 cut(s) | 60, 180, 888, 1035, 1248, 1673, 2351 |
| MboI | GATC | 7 cut(s) | 58, 178, 886, 1033, 1246, 1671, 2349 |
| MfeI | CAATTG | 1 cut(s) | 1667 |
| MflI | RGATCY | 2 cut(s) | 58, 1033 |
| MhlI | GDGCHC | 3 cut(s) | 1751, 2030, 2274 |
| MlsI | TGGCCA | 1 cut(s) | 2108 |
| MluNI | TGGCCA | 1 cut(s) | 2108 |
| MlyI | GAGTC | 2 cut(s) | 440, 993 |
| MmeI | TCCRAC | 1 cut(s) | 1806 |
| Mox20I | TGGCCA | 1 cut(s) | 2108 |
| Mph1103I | ATGCAT | 3 cut(s) | 368, 1777, 1912 |
| MroNI | GCCGGC | 1 cut(s) | 1882 |
| MroXI | GAANNNNTTC | 2 cut(s) | 164, 1155 |
| MscI | TGGCCA | 1 cut(s) | 2108 |
| MslI | CAYNNNNRTG | 4 cut(s) | 934, 1017, 1146, 2121 |
| Msp20I | TGGCCA | 1 cut(s) | 2108 |
| MspI | CCGG | 1 cut(s) | 1883 |
| MspR9I | CCNGG | 1 cut(s) | 238 |
| MunI | CAATTG | 1 cut(s) | 1667 |
| Mva1269I | GAATGC | 3 cut(s) | 266, 1696, 1775 |
| MvaI | CCWGG | 1 cut(s) | 238 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 212, 606, 635 |
| NaeI | GCCGGC | 1 cut(s) | 1884 |
| NdeI | CATATG | 2 cut(s) | 196, 1912 |
| NdeII | GATC | 7 cut(s) | 58, 178, 886, 1033, 1246, 1671, 2349 |
| NgoMIV | GCCGGC | 1 cut(s) | 1882 |
| NlaIV | GGNNCC | 8 cut(s) | 222, 246, 309, 709, 979, 1768, 1881, 1932 |
| NmuCI | GTSAC | 2 cut(s) | 663, 2309 |
| NsiI | ATGCAT | 3 cut(s) | 368, 1777, 1912 |
| NspI | RCATGY | 1 cut(s) | 2260 |
| NspV | TTCGAA | 1 cut(s) | 1998 |
| PaeR7I | CTCGAG | 1 cut(s) | 1448 |
| PagI | TCATGA | 2 cut(s) | 292, 684 |
| PciI | ACATGT | 1 cut(s) | 2256 |
| PciSI | GCTCTTC | 2 cut(s) | 1269, 2156 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1003 |
| PctI | GAATGC | 3 cut(s) | 266, 1696, 1775 |
| PdiI | GCCGGC | 1 cut(s) | 1884 |
| PdmI | GAANNNNTTC | 2 cut(s) | 164, 1155 |
| PfeI | GAWTC | 7 cut(s) | 509, 532, 654, 1151, 1703, 2072, 2298 |
| PfoI | TCCNGGA | 1 cut(s) | 236 |
| PkrI | GCNGC | 7 cut(s) | 76, 739, 742, 945, 1105, 1537, 1540 |
| PleI | GAGTC | 2 cut(s) | 439, 993 |
| PpsI | GAGTC | 2 cut(s) | 439, 993 |
| PpuMI | RGGWCCY | 3 cut(s) | 308, 708, 2242 |
| PscI | ACATGT | 1 cut(s) | 2256 |
| PshAI | GACNNNNGTC | 1 cut(s) | 414 |
| PshBI | ATTAAT | 1 cut(s) | 1755 |
| Psp5II | RGGWCCY | 3 cut(s) | 308, 708, 2242 |
| Psp6I | CCWGG | 1 cut(s) | 236 |
| PspFI | CCCAGC | 1 cut(s) | 12 |
| PspGI | CCWGG | 1 cut(s) | 236 |
| PspN4I | GGNNCC | 8 cut(s) | 222, 246, 309, 709, 979, 1768, 1881, 1932 |
| PspPI | GGNCC | 7 cut(s) | 220, 308, 708, 1584, 1931, 1964, 2242 |
| PspPPI | RGGWCCY | 3 cut(s) | 308, 708, 2242 |
| PspXI | VCTCGAGB | 1 cut(s) | 1448 |
| PstI | CTGCAG | 2 cut(s) | 948, 2080 |
| PstNI | CAGNNNCTG | 3 cut(s) | 452, 939, 974 |
| PsuI | RGATCY | 2 cut(s) | 58, 1033 |
| RsaI | GTAC | 3 cut(s) | 692, 918, 1339 |
| RsaNI | GTAC | 3 cut(s) | 691, 917, 1338 |
| RseI | CAYNNNNRTG | 4 cut(s) | 934, 1017, 1146, 2121 |
| SapI | GCTCTTC | 2 cut(s) | 1269, 2156 |
| SatI | GCNGC | 7 cut(s) | 75, 738, 741, 944, 1104, 1536, 1539 |
| Sau3AI | GATC | 7 cut(s) | 58, 178, 886, 1033, 1246, 1671, 2349 |
| Sau96I | GGNCC | 7 cut(s) | 220, 308, 708, 1584, 1931, 1964, 2242 |
| SchI | GAGTC | 2 cut(s) | 440, 993 |
| ScrFI | CCNGG | 1 cut(s) | 238 |
| SduI | GDGCHC | 3 cut(s) | 1751, 2030, 2274 |
| SfaNI | GCATC | 8 cut(s) | 331, 331, 375, 550, 926, 961, 1249, 1558 |
| SfcI | CTRYAG | 2 cut(s) | 944, 2076 |
| Sfr274I | CTCGAG | 1 cut(s) | 1448 |
| SfuI | TTCGAA | 1 cut(s) | 1998 |
| SinI | GGWCC | 5 cut(s) | 220, 308, 708, 1931, 2242 |
| SlaI | CTCGAG | 1 cut(s) | 1448 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 934, 1017, 1146, 2121 |
| SmlI | CTYRAG | 1 cut(s) | 1448 |
| SmoI | CTYRAG | 1 cut(s) | 1448 |
| SpeI | ACTAGT | 2 cut(s) | 1651, 2200 |
| SsiI | CCGC | 1 cut(s) | 1573 |
| SspI | AATATT | 3 cut(s) | 391, 492, 1322 |
| SspMI | CTAG | 6 cut(s) | 833, 1160, 1493, 1503, 1652, 2201 |
| StyD4I | CCNGG | 1 cut(s) | 236 |
| StyI | CCWWGG | 2 cut(s) | 1075, 1926 |
| TaaI | ACNGT | 4 cut(s) | 1061, 1523, 1609, 2326 |
| TaiI | ACGT | 3 cut(s) | 359, 1009, 1812 |
| TaqI | TCGA | 8 cut(s) | 429, 889, 997, 1430, 1449, 1674, 1815, 1998 |
| TaqII | GACCGA | 1 cut(s) | 1948 |
| TatI | WGTACW | 2 cut(s) | 916, 1337 |
| TfiI | GAWTC | 7 cut(s) | 509, 532, 654, 1151, 1703, 2072, 2298 |
| TseFI | GTSAC | 2 cut(s) | 663, 2309 |
| TseI | GCWGC | 7 cut(s) | 74, 737, 740, 943, 1103, 1535, 1538 |
| Tsp45I | GTSAC | 2 cut(s) | 663, 2309 |
| TspGWI | ACGGA | 1 cut(s) | 1608 |
| VneI | GTGCAC | 1 cut(s) | 2270 |
| VpaK11BI | GGWCC | 5 cut(s) | 220, 308, 708, 1931, 2242 |
| VspI | ATTAAT | 1 cut(s) | 1755 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 543, 2065 |
| XapI | RAATTY | 5 cut(s) | 232, 436, 520, 1496, 2000 |
| XbaI | TCTAGA | 2 cut(s) | 832, 1159 |
| XceI | RCATGY | 1 cut(s) | 2260 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 701 |
| XhoI | CTCGAG | 1 cut(s) | 1448 |
| XmnI | GAANNNNTTC | 2 cut(s) | 164, 1155 |
| XspI | CTAG | 6 cut(s) | 833, 1160, 1493, 1503, 1652, 2201 |
| Zsp2I | ATGCAT | 3 cut(s) | 368, 1777, 1912 |