Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 271 |
| AcuI | CTGAAG | 1 cut(s) | 28 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 48, 67, 102, 271, 299, 300 |
| AgsI | TTSAA | 2 cut(s) | 233, 379 |
| AjnI | CCWGG | 2 cut(s) | 264, 281 |
| AluBI | AGCT | 3 cut(s) | 32, 257, 397 |
| AluI | AGCT | 3 cut(s) | 32, 257, 397 |
| AoxI | GGCC | 2 cut(s) | 111, 279 |
| ApeKI | GCWGC | 2 cut(s) | 29, 434 |
| AspS9I | GGNCC | 2 cut(s) | 111, 406 |
| AsuNHI | GCTAGC | 1 cut(s) | 32 |
| AvaII | GGWCC | 1 cut(s) | 406 |
| BanII | GRGCYC | 1 cut(s) | 308 |
| BbvI | GCAGC | 2 cut(s) | 41, 421 |
| BccI | CCATC | 1 cut(s) | 42 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 305, 339 |
| BciT130I | CCWGG | 2 cut(s) | 266, 283 |
| BciVI | GTATCC | 1 cut(s) | 331 |
| BfaI | CTAG | 2 cut(s) | 33, 147 |
| BfmI | CTRYAG | 1 cut(s) | 435 |
| BfuI | GTATCC | 1 cut(s) | 331 |
| BglII | AGATCT | 2 cut(s) | 19, 152 |
| BisI | GCNGC | 2 cut(s) | 30, 435 |
| BlsI | GCNGC | 2 cut(s) | 31, 436 |
| Bme1390I | CCNGG | 2 cut(s) | 266, 283 |
| Bme18I | GGWCC | 1 cut(s) | 406 |
| BmgT120I | GGNCC | 2 cut(s) | 111, 406 |
| BmiI | GGNNCC | 3 cut(s) | 94, 112, 305 |
| BmrFI | CCNGG | 2 cut(s) | 266, 283 |
| BmsI | GCATC | 2 cut(s) | 211, 405 |
| BmtI | GCTAGC | 1 cut(s) | 36 |
| BpuEI | CTTGAG | 1 cut(s) | 109 |
| Bsa29I | ATCGAT | 1 cut(s) | 413 |
| BsaJI | CCNNGG | 1 cut(s) | 264 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 48, 67, 102, 271, 299, 300 |
| BseBI | CCWGG | 2 cut(s) | 266, 283 |
| BseCI | ATCGAT | 1 cut(s) | 413 |
| BseDI | CCNNGG | 1 cut(s) | 264 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 48, 67, 102, 271, 299, 300 |
| BseMII | CTCAG | 1 cut(s) | 111 |
| BseRI | GAGGAG | 1 cut(s) | 290 |
| BseXI | GCAGC | 2 cut(s) | 41, 421 |
| Bsh1285I | CGRYCG | 1 cut(s) | 413 |
| BshFI | GGCC | 2 cut(s) | 113, 281 |
| BshVI | ATCGAT | 1 cut(s) | 413 |
| BsiEI | CGRYCG | 1 cut(s) | 413 |
| BslFI | GGGAC | 1 cut(s) | 377 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 48, 67, 102, 271, 299, 300 |
| BsmFI | GGGAC | 1 cut(s) | 377 |
| BsnI | GGCC | 2 cut(s) | 113, 281 |
| Bsp1286I | GDGCHC | 1 cut(s) | 308 |
| Bsp143I | GATC | 4 cut(s) | 19, 79, 152, 410 |
| BspANI | GGCC | 2 cut(s) | 113, 281 |
| BspCNI | CTCAG | 1 cut(s) | 110 |
| BspDI | ATCGAT | 1 cut(s) | 413 |
| BspLI | GGNNCC | 3 cut(s) | 94, 112, 305 |
| BspMAI | CTGCAG | 1 cut(s) | 439 |
| BspOI | GCTAGC | 1 cut(s) | 36 |
| BspQI | GCTCTTC | 1 cut(s) | 387 |
| BssECI | CCNNGG | 1 cut(s) | 264 |
| BssMI | GATC | 4 cut(s) | 19, 79, 152, 410 |
| Bst2UI | CCWGG | 2 cut(s) | 266, 283 |
| Bst6I | CTCTTC | 1 cut(s) | 387 |
| BstC8I | GCNNGC | 2 cut(s) | 34, 399 |
| BstDEI | CTNAG | 1 cut(s) | 97 |
| BstKTI | GATC | 4 cut(s) | 22, 82, 155, 413 |
| BstMBI | GATC | 4 cut(s) | 19, 79, 152, 410 |
| BstMCI | CGRYCG | 1 cut(s) | 413 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 440 |
| BstNI | CCWGG | 2 cut(s) | 266, 283 |
| BstSCI | CCNGG | 2 cut(s) | 264, 281 |
| BstSFI | CTRYAG | 1 cut(s) | 435 |
| BstV1I | GCAGC | 2 cut(s) | 41, 421 |
| BstX2I | RGATCY | 2 cut(s) | 19, 152 |
| BstYI | RGATCY | 2 cut(s) | 19, 152 |
| Bsu15I | ATCGAT | 1 cut(s) | 413 |
| BsuI | GTATCC | 1 cut(s) | 331 |
| BsuRI | GGCC | 2 cut(s) | 113, 281 |
| BsuTUI | ATCGAT | 1 cut(s) | 413 |
| Cac8I | GCNNGC | 2 cut(s) | 34, 399 |
| Cfr13I | GGNCC | 2 cut(s) | 111, 406 |
| ClaI | ATCGAT | 1 cut(s) | 413 |
| CpoI | CGGWCCG | 1 cut(s) | 406 |
| CspI | CGGWCCG | 1 cut(s) | 406 |
| CviAII | CATG | 2 cut(s) | 251, 367 |
| CviJI | RGCY | 9 cut(s) | 32, 113, 120, 257, 281, 306, 397, 401, 443 |
| CviKI_1 | RGCY | 9 cut(s) | 32, 113, 120, 257, 281, 306, 397, 401, 443 |
| DdeI | CTNAG | 1 cut(s) | 97 |
| DpnI | GATC | 4 cut(s) | 21, 81, 154, 412 |
| DpnII | GATC | 4 cut(s) | 19, 79, 152, 410 |
| Eam1104I | CTCTTC | 1 cut(s) | 387 |
| EarI | CTCTTC | 1 cut(s) | 387 |
| Eco147I | AGGCCT | 1 cut(s) | 281 |
| Eco24I | GRGCYC | 1 cut(s) | 308 |
| Eco47I | GGWCC | 1 cut(s) | 406 |
| Eco57I | CTGAAG | 1 cut(s) | 28 |
| EcoO109I | RGGNCCY | 1 cut(s) | 111 |
| EcoRII | CCWGG | 2 cut(s) | 264, 281 |
| EcoT38I | GRGCYC | 1 cut(s) | 308 |
| FaeI | CATG | 2 cut(s) | 254, 370 |
| FaiI | YATR | 5 cut(s) | 162, 170, 207, 252, 368 |
| FaqI | GGGAC | 1 cut(s) | 377 |
| FatI | CATG | 2 cut(s) | 250, 366 |
| Fnu4HI | GCNGC | 2 cut(s) | 30, 435 |
| FriOI | GRGCYC | 1 cut(s) | 308 |
| Fsp4HI | GCNGC | 2 cut(s) | 30, 435 |
| FspBI | CTAG | 2 cut(s) | 33, 147 |
| GluI | GCNGC | 2 cut(s) | 30, 435 |
| HaeIII | GGCC | 2 cut(s) | 113, 281 |
| Hin1II | CATG | 2 cut(s) | 254, 370 |
| HincII | GTYRAC | 1 cut(s) | 136 |
| HindII | GTYRAC | 1 cut(s) | 136 |
| HindIII | AAGCTT | 1 cut(s) | 255 |
| HpaI | GTTAAC | 1 cut(s) | 136 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188I | TCNGA | 4 cut(s) | 47, 100, 157, 410 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| HpyAV | CCTTC | 1 cut(s) | 52 |
| HpyCH4IV | ACGT | 1 cut(s) | 350 |
| HpyCH4V | TGCA | 5 cut(s) | 9, 17, 202, 316, 437 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 440 |
| HpyF3I | CTNAG | 1 cut(s) | 97 |
| HpySE526I | ACGT | 1 cut(s) | 350 |
| Hsp92II | CATG | 2 cut(s) | 254, 370 |
| KspAI | GTTAAC | 1 cut(s) | 136 |
| Kzo9I | GATC | 4 cut(s) | 19, 79, 152, 410 |
| LguI | GCTCTTC | 1 cut(s) | 387 |
| LmnI | GCTCC | 1 cut(s) | 303 |
| LpnPI | CCDG | 8 cut(s) | 8, 199, 251, 268, 278, 295, 308, 383 |
| Lsp1109I | GCAGC | 2 cut(s) | 41, 421 |
| LweI | GCATC | 2 cut(s) | 211, 405 |
| MaeI | CTAG | 2 cut(s) | 33, 147 |
| MaeII | ACGT | 1 cut(s) | 350 |
| MalI | GATC | 4 cut(s) | 21, 81, 154, 412 |
| MboI | GATC | 4 cut(s) | 19, 79, 152, 410 |
| MboII | GAAGA | 2 cut(s) | 245, 404 |
| MflI | RGATCY | 2 cut(s) | 19, 152 |
| MhlI | GDGCHC | 1 cut(s) | 308 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| MnlI | CCTC | 7 cut(s) | 66, 106, 203, 210, 268, 271, 381 |
| MseI | TTAA | 1 cut(s) | 135 |
| MspR9I | CCNGG | 2 cut(s) | 266, 283 |
| MvaI | CCWGG | 2 cut(s) | 266, 283 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 440 |
| NdeII | GATC | 4 cut(s) | 19, 79, 152, 410 |
| NheI | GCTAGC | 1 cut(s) | 32 |
| NlaIII | CATG | 2 cut(s) | 254, 370 |
| NlaIV | GGNNCC | 3 cut(s) | 94, 112, 305 |
| PceI | AGGCCT | 1 cut(s) | 281 |
| PciSI | GCTCTTC | 1 cut(s) | 387 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 347, 410 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 271 |
| PkrI | GCNGC | 2 cut(s) | 31, 436 |
| Ple19I | CGATCG | 1 cut(s) | 413 |
| Psp6I | CCWGG | 2 cut(s) | 264, 281 |
| PspGI | CCWGG | 2 cut(s) | 264, 281 |
| PspN4I | GGNNCC | 3 cut(s) | 94, 112, 305 |
| PspPI | GGNCC | 2 cut(s) | 111, 406 |
| PstI | CTGCAG | 1 cut(s) | 439 |
| PsuI | RGATCY | 2 cut(s) | 19, 152 |
| PvuI | CGATCG | 1 cut(s) | 413 |
| Rsr2I | CGGWCCG | 1 cut(s) | 406 |
| RsrII | CGGWCCG | 1 cut(s) | 406 |
| SapI | GCTCTTC | 1 cut(s) | 387 |
| SaqAI | TTAA | 1 cut(s) | 135 |
| SatI | GCNGC | 2 cut(s) | 30, 435 |
| Sau3AI | GATC | 4 cut(s) | 19, 79, 152, 410 |
| Sau96I | GGNCC | 2 cut(s) | 111, 406 |
| ScrFI | CCNGG | 2 cut(s) | 266, 283 |
| SduI | GDGCHC | 1 cut(s) | 308 |
| SetI | ASST | 7 cut(s) | 34, 77, 141, 259, 270, 353, 399 |
| SfaNI | GCATC | 2 cut(s) | 211, 405 |
| SfcI | CTRYAG | 1 cut(s) | 435 |
| SinI | GGWCC | 1 cut(s) | 406 |
| SmlI | CTYRAG | 1 cut(s) | 124 |
| SmoI | CTYRAG | 1 cut(s) | 124 |
| SseBI | AGGCCT | 1 cut(s) | 281 |
| SspMI | CTAG | 2 cut(s) | 33, 147 |
| StuI | AGGCCT | 1 cut(s) | 281 |
| StyD4I | CCNGG | 2 cut(s) | 264, 281 |
| TaiI | ACGT | 1 cut(s) | 353 |
| TaqI | TCGA | 2 cut(s) | 325, 413 |
| TaqII | GACCGA | 1 cut(s) | 394 |
| Tru1I | TTAA | 1 cut(s) | 135 |
| Tru9I | TTAA | 1 cut(s) | 135 |
| TseI | GCWGC | 2 cut(s) | 29, 434 |
| TspDTI | ATGAA | 1 cut(s) | 267 |
| TspGWI | ACGGA | 1 cut(s) | 203 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 271 |
| VpaK11BI | GGWCC | 1 cut(s) | 406 |
| XspI | CTAG | 2 cut(s) | 33, 147 |