Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 252, 495 |
| AcoI | YGGCCR | 1 cut(s) | 547 |
| AcsI | RAATTY | 1 cut(s) | 569 |
| AcuI | CTGAAG | 1 cut(s) | 300 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 162, 472 |
| AgeI | ACCGGT | 1 cut(s) | 320 |
| AgsI | TTSAA | 3 cut(s) | 23, 116, 430 |
| AluBI | AGCT | 2 cut(s) | 395, 436 |
| AluI | AGCT | 2 cut(s) | 395, 436 |
| Alw26I | GTCTC | 1 cut(s) | 85 |
| AlwI | GGATC | 2 cut(s) | 252, 495 |
| AoxI | GGCC | 3 cut(s) | 365, 463, 547 |
| ApeKI | GCWGC | 4 cut(s) | 4, 193, 338, 386 |
| ApoI | RAATTY | 1 cut(s) | 569 |
| AseI | ATTAAT | 1 cut(s) | 375 |
| AsiGI | ACCGGT | 1 cut(s) | 320 |
| AspA2I | CCTAGG | 1 cut(s) | 470 |
| AspLEI | GCGC | 1 cut(s) | 148 |
| AspS9I | GGNCC | 3 cut(s) | 79, 366, 464 |
| AsuHPI | GGTGA | 1 cut(s) | 310 |
| AvaII | GGWCC | 1 cut(s) | 79 |
| AvrII | CCTAGG | 1 cut(s) | 470 |
| BbvI | GCAGC | 3 cut(s) | 205, 325, 398 |
| BceAI | ACGGC | 1 cut(s) | 534 |
| BclI | TGATCA | 1 cut(s) | 138 |
| BcoDI | GTCTC | 1 cut(s) | 85 |
| BfaI | CTAG | 4 cut(s) | 122, 255, 342, 471 |
| BfmI | CTRYAG | 1 cut(s) | 31 |
| BglII | AGATCT | 1 cut(s) | 251 |
| BisI | GCNGC | 4 cut(s) | 5, 194, 339, 387 |
| BlnI | CCTAGG | 1 cut(s) | 470 |
| BlsI | GCNGC | 4 cut(s) | 6, 195, 340, 388 |
| Bme18I | GGWCC | 1 cut(s) | 79 |
| BmgT120I | GGNCC | 3 cut(s) | 79, 366, 464 |
| BmiI | GGNNCC | 2 cut(s) | 483, 563 |
| BmsI | GCATC | 1 cut(s) | 209 |
| Bpu10I | CCTNAGC | 1 cut(s) | 382 |
| BsaI | GGTCTC | 1 cut(s) | 85 |
| BsaJI | CCNNGG | 3 cut(s) | 407, 470, 507 |
| BsaWI | WCCGGW | 1 cut(s) | 320 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 473, 503 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 162, 472 |
| Bse118I | RCCGGY | 1 cut(s) | 320 |
| Bse3DI | GCAATG | 1 cut(s) | 215 |
| BseDI | CCNNGG | 3 cut(s) | 407, 470, 507 |
| BseGI | GGATG | 1 cut(s) | 152 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 162, 472 |
| BseMI | GCAATG | 1 cut(s) | 215 |
| BseMII | CTCAG | 2 cut(s) | 218, 262 |
| BseXI | GCAGC | 3 cut(s) | 205, 325, 398 |
| BshFI | GGCC | 3 cut(s) | 367, 465, 549 |
| BshTI | ACCGGT | 1 cut(s) | 320 |
| BsiSI | CCGG | 1 cut(s) | 321 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 162, 472 |
| BsmAI | GTCTC | 1 cut(s) | 85 |
| BsnI | GGCC | 3 cut(s) | 367, 465, 549 |
| Bso31I | GGTCTC | 1 cut(s) | 85 |
| Bsp143I | GATC | 4 cut(s) | 138, 244, 251, 500 |
| Bsp19I | CCATGG | 1 cut(s) | 507 |
| BspANI | GGCC | 3 cut(s) | 367, 465, 549 |
| BspCNI | CTCAG | 2 cut(s) | 217, 261 |
| BspLI | GGNNCC | 2 cut(s) | 483, 563 |
| BspPI | GGATC | 2 cut(s) | 252, 495 |
| BspTNI | GGTCTC | 1 cut(s) | 85 |
| BsrDI | GCAATG | 1 cut(s) | 215 |
| BsrFI | RCCGGY | 1 cut(s) | 320 |
| BssAI | RCCGGY | 1 cut(s) | 320 |
| BssECI | CCNNGG | 3 cut(s) | 407, 470, 507 |
| BssMI | GATC | 4 cut(s) | 138, 244, 251, 500 |
| BssT1I | CCWWGG | 3 cut(s) | 407, 470, 507 |
| Bst4CI | ACNGT | 1 cut(s) | 32 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstC8I | GCNNGC | 2 cut(s) | 198, 397 |
| BstDEI | CTNAG | 4 cut(s) | 87, 204, 248, 382 |
| BstDSI | CCRYGG | 1 cut(s) | 507 |
| BstF5I | GGATG | 1 cut(s) | 152 |
| BstHHI | GCGC | 1 cut(s) | 148 |
| BstKTI | GATC | 4 cut(s) | 141, 247, 254, 503 |
| BstMAI | GTCTC | 1 cut(s) | 85 |
| BstMBI | GATC | 4 cut(s) | 138, 244, 251, 500 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 392 |
| BstSFI | CTRYAG | 1 cut(s) | 31 |
| BstV1I | GCAGC | 3 cut(s) | 205, 325, 398 |
| BstX2I | RGATCY | 3 cut(s) | 244, 251, 500 |
| BstYI | RGATCY | 3 cut(s) | 244, 251, 500 |
| BsuRI | GGCC | 3 cut(s) | 367, 465, 549 |
| BtgI | CCRYGG | 1 cut(s) | 507 |
| BtsCI | GGATG | 1 cut(s) | 152 |
| Cac8I | GCNNGC | 2 cut(s) | 198, 397 |
| CfoI | GCGC | 1 cut(s) | 148 |
| Cfr10I | RCCGGY | 1 cut(s) | 320 |
| Cfr13I | GGNCC | 3 cut(s) | 79, 366, 464 |
| CseI | GACGC | 1 cut(s) | 284 |
| CspAI | ACCGGT | 1 cut(s) | 320 |
| CviAII | CATG | 4 cut(s) | 83, 239, 477, 508 |
| CviJI | RGCY | 7 cut(s) | 367, 395, 436, 465, 484, 515, 549 |
| CviKI_1 | RGCY | 7 cut(s) | 367, 395, 436, 465, 484, 515, 549 |
| DdeI | CTNAG | 4 cut(s) | 87, 204, 248, 382 |
| DpnI | GATC | 4 cut(s) | 140, 246, 253, 502 |
| DpnII | GATC | 4 cut(s) | 138, 244, 251, 500 |
| EaeI | YGGCCR | 1 cut(s) | 547 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| Eco130I | CCWWGG | 3 cut(s) | 407, 470, 507 |
| Eco31I | GGTCTC | 1 cut(s) | 85 |
| Eco47I | GGWCC | 1 cut(s) | 79 |
| Eco57I | CTGAAG | 1 cut(s) | 300 |
| EcoT14I | CCWWGG | 3 cut(s) | 407, 470, 507 |
| ErhI | CCWWGG | 3 cut(s) | 407, 470, 507 |
| FaeI | CATG | 4 cut(s) | 86, 242, 480, 511 |
| FaiI | YATR | 9 cut(s) | 84, 240, 270, 330, 357, 478, 509, 533, 540 |
| FatI | CATG | 4 cut(s) | 82, 238, 476, 507 |
| FbaI | TGATCA | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 194, 339, 387 |
| FokI | GGATG | 1 cut(s) | 139 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 194, 339, 387 |
| FspBI | CTAG | 4 cut(s) | 122, 255, 342, 471 |
| GlaI | GCGC | 1 cut(s) | 147 |
| GluI | GCNGC | 4 cut(s) | 5, 194, 339, 387 |
| HaeIII | GGCC | 3 cut(s) | 367, 465, 549 |
| HapII | CCGG | 1 cut(s) | 321 |
| HgaI | GACGC | 1 cut(s) | 284 |
| HhaI | GCGC | 1 cut(s) | 148 |
| Hin1II | CATG | 4 cut(s) | 86, 242, 480, 511 |
| Hin6I | GCGC | 1 cut(s) | 146 |
| HinP1I | GCGC | 1 cut(s) | 146 |
| HincII | GTYRAC | 1 cut(s) | 46 |
| HindII | GTYRAC | 1 cut(s) | 46 |
| HindIII | AAGCTT | 1 cut(s) | 393 |
| HinfI | GANTC | 1 cut(s) | 315 |
| HpaI | GTTAAC | 1 cut(s) | 46 |
| HpaII | CCGG | 1 cut(s) | 321 |
| HphI | GGTGA | 1 cut(s) | 310 |
| Hpy166II | GTNNAC | 1 cut(s) | 46 |
| Hpy188I | TCNGA | 1 cut(s) | 251 |
| Hpy8I | GTNNAC | 1 cut(s) | 46 |
| HpyCH4III | ACNGT | 1 cut(s) | 32 |
| HpyCH4IV | ACGT | 1 cut(s) | 61 |
| HpyCH4V | TGCA | 4 cut(s) | 7, 215, 263, 399 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 392 |
| HpyF3I | CTNAG | 4 cut(s) | 87, 204, 248, 382 |
| HpySE526I | ACGT | 1 cut(s) | 61 |
| Hsp92II | CATG | 4 cut(s) | 86, 242, 480, 511 |
| HspAI | GCGC | 1 cut(s) | 146 |
| Ksp22I | TGATCA | 1 cut(s) | 138 |
| KspAI | GTTAAC | 1 cut(s) | 46 |
| Kzo9I | GATC | 4 cut(s) | 138, 244, 251, 500 |
| LmnI | GCTCC | 1 cut(s) | 481 |
| LpnPI | CCDG | 5 cut(s) | 146, 182, 191, 334, 444 |
| Lsp1109I | GCAGC | 3 cut(s) | 205, 325, 398 |
| LweI | GCATC | 1 cut(s) | 209 |
| MaeI | CTAG | 4 cut(s) | 122, 255, 342, 471 |
| MaeII | ACGT | 1 cut(s) | 61 |
| MalI | GATC | 4 cut(s) | 140, 246, 253, 502 |
| MboI | GATC | 4 cut(s) | 138, 244, 251, 500 |
| MboII | GAAGA | 2 cut(s) | 97, 359 |
| MflI | RGATCY | 3 cut(s) | 244, 251, 500 |
| MluCI | AATT | 1 cut(s) | 569 |
| MnlI | CCTC | 5 cut(s) | 59, 110, 283, 477, 505 |
| MseI | TTAA | 3 cut(s) | 45, 375, 413 |
| MslI | CAYNNNNRTG | 1 cut(s) | 220 |
| MspI | CCGG | 1 cut(s) | 321 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 392 |
| NcoI | CCATGG | 1 cut(s) | 507 |
| NdeII | GATC | 4 cut(s) | 138, 244, 251, 500 |
| NlaIII | CATG | 4 cut(s) | 86, 242, 480, 511 |
| NlaIV | GGNNCC | 2 cut(s) | 483, 563 |
| PfeI | GAWTC | 1 cut(s) | 315 |
| PinAI | ACCGGT | 1 cut(s) | 320 |
| PkrI | GCNGC | 4 cut(s) | 6, 195, 340, 388 |
| PshBI | ATTAAT | 1 cut(s) | 375 |
| PspN4I | GGNNCC | 2 cut(s) | 483, 563 |
| PspPI | GGNCC | 3 cut(s) | 79, 366, 464 |
| PsuI | RGATCY | 3 cut(s) | 244, 251, 500 |
| RseI | CAYNNNNRTG | 1 cut(s) | 220 |
| SaqAI | TTAA | 3 cut(s) | 45, 375, 413 |
| SatI | GCNGC | 4 cut(s) | 5, 194, 339, 387 |
| Sau3AI | GATC | 4 cut(s) | 138, 244, 251, 500 |
| Sau96I | GGNCC | 3 cut(s) | 79, 366, 464 |
| SfaNI | GCATC | 1 cut(s) | 209 |
| SfcI | CTRYAG | 1 cut(s) | 31 |
| SinI | GGWCC | 1 cut(s) | 79 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 220 |
| Sse9I | AATT | 1 cut(s) | 569 |
| SspI | AATATT | 1 cut(s) | 178 |
| SspMI | CTAG | 4 cut(s) | 122, 255, 342, 471 |
| StyI | CCWWGG | 3 cut(s) | 407, 470, 507 |
| TaaI | ACNGT | 1 cut(s) | 32 |
| TaiI | ACGT | 1 cut(s) | 64 |
| TaqI | TCGA | 1 cut(s) | 51 |
| TasI | AATT | 1 cut(s) | 569 |
| TfiI | GAWTC | 1 cut(s) | 315 |
| Tru1I | TTAA | 3 cut(s) | 45, 375, 413 |
| Tru9I | TTAA | 3 cut(s) | 45, 375, 413 |
| TseI | GCWGC | 4 cut(s) | 4, 193, 338, 386 |
| TspDTI | ATGAA | 2 cut(s) | 314, 318 |
| VpaK11BI | GGWCC | 1 cut(s) | 79 |
| VspI | ATTAAT | 1 cut(s) | 375 |
| XapI | RAATTY | 1 cut(s) | 569 |
| XmaJI | CCTAGG | 1 cut(s) | 470 |
| XspI | CTAG | 4 cut(s) | 122, 255, 342, 471 |