Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 389 |
| AciI | CCGC | 4 cut(s) | 101, 152, 229, 399 |
| AclWI | GGATC | 4 cut(s) | 30, 188, 201, 358 |
| AcsI | RAATTY | 2 cut(s) | 965, 1040 |
| AcvI | CACGTG | 1 cut(s) | 1029 |
| AcyI | GRCGYC | 1 cut(s) | 301 |
| AdeI | CACNNNGTG | 1 cut(s) | 558 |
| AfaI | GTAC | 2 cut(s) | 12, 297 |
| AfeI | AGCGCT | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 297, 389, 517, 623, 718 |
| AflIII | ACRYGT | 1 cut(s) | 831 |
| AgsI | TTSAA | 4 cut(s) | 218, 380, 901, 1073 |
| AjnI | CCWGG | 3 cut(s) | 121, 410, 541 |
| AleI | CACNNNNGTG | 1 cut(s) | 980 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 821, 853 |
| AluBI | AGCT | 3 cut(s) | 590, 683, 920 |
| AluI | AGCT | 3 cut(s) | 590, 683, 920 |
| Alw21I | GWGCWC | 1 cut(s) | 290 |
| Alw26I | GTCTC | 1 cut(s) | 247 |
| Alw44I | GTGCAC | 1 cut(s) | 286 |
| AlwI | GGATC | 4 cut(s) | 30, 188, 201, 358 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 353 |
| Aor51HI | AGCGCT | 1 cut(s) | 159 |
| AoxI | GGCC | 1 cut(s) | 408 |
| ApaLI | GTGCAC | 1 cut(s) | 286 |
| ApeKI | GCWGC | 4 cut(s) | 155, 583, 947, 972 |
| ApoI | RAATTY | 2 cut(s) | 965, 1040 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 992, 1024 |
| AspLEI | GCGC | 2 cut(s) | 160, 613 |
| AspS9I | GGNCC | 2 cut(s) | 408, 837 |
| AsuC2I | CCSGG | 2 cut(s) | 24, 821 |
| AvaII | GGWCC | 1 cut(s) | 837 |
| BaeGI | GKGCMC | 1 cut(s) | 290 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 27 |
| BamHI | GGATCC | 1 cut(s) | 193 |
| BauI | CACGAG | 1 cut(s) | 942 |
| BbrPI | CACGTG | 1 cut(s) | 1029 |
| Bbv12I | GWGCWC | 1 cut(s) | 290 |
| BbvI | GCAGC | 4 cut(s) | 167, 570, 934, 984 |
| BccI | CCATC | 7 cut(s) | 83, 199, 260, 268, 276, 399, 838 |
| BceAI | ACGGC | 1 cut(s) | 314 |
| BciT130I | CCWGG | 3 cut(s) | 123, 412, 543 |
| BclI | TGATCA | 1 cut(s) | 600 |
| BcnI | CCSGG | 2 cut(s) | 24, 821 |
| BcoDI | GTCTC | 1 cut(s) | 247 |
| BfaI | CTAG | 2 cut(s) | 107, 621 |
| BfmI | CTRYAG | 2 cut(s) | 370, 1018 |
| BfoI | RGCGCY | 1 cut(s) | 161 |
| BisI | GCNGC | 5 cut(s) | 153, 156, 584, 948, 973 |
| BlpI | GCTNAGC | 2 cut(s) | 395, 574 |
| BlsI | GCNGC | 5 cut(s) | 154, 157, 585, 949, 974 |
| Bme1390I | CCNGG | 5 cut(s) | 24, 123, 412, 543, 821 |
| Bme18I | GGWCC | 1 cut(s) | 837 |
| BmgT120I | GGNCC | 2 cut(s) | 408, 837 |
| BmiI | GGNNCC | 1 cut(s) | 195 |
| BmrFI | CCNGG | 5 cut(s) | 24, 123, 412, 543, 821 |
| BmrI | ACTGGG | 1 cut(s) | 425 |
| BmsI | GCATC | 1 cut(s) | 693 |
| BmuI | ACTGGG | 1 cut(s) | 425 |
| BpmI | CTGGAG | 3 cut(s) | 144, 375, 912 |
| Bpu10I | CCTNAGC | 1 cut(s) | 342 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 395, 574 |
| BpuEI | CTTGAG | 1 cut(s) | 900 |
| BpuMI | CCSGG | 2 cut(s) | 24, 821 |
| BsaAI | YACGTR | 2 cut(s) | 295, 1029 |
| BsaHI | GRCGYC | 1 cut(s) | 301 |
| BsaJI | CCNNGG | 3 cut(s) | 22, 411, 878 |
| BsaWI | WCCGGW | 1 cut(s) | 329 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 269, 299 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 297, 389, 517, 623, 718 |
| Bse118I | RCCGGY | 1 cut(s) | 249 |
| Bse1I | ACTGG | 2 cut(s) | 431, 794 |
| BseBI | CCWGG | 3 cut(s) | 123, 412, 543 |
| BseDI | CCNNGG | 3 cut(s) | 22, 411, 878 |
| BseGI | GGATG | 5 cut(s) | 210, 271, 279, 287, 636 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 297, 389, 517, 623, 718 |
| BseMII | CTCAG | 2 cut(s) | 356, 569 |
| BseNI | ACTGG | 2 cut(s) | 431, 794 |
| BseRI | GAGGAG | 1 cut(s) | 335 |
| BseSI | GKGCMC | 1 cut(s) | 290 |
| BseXI | GCAGC | 4 cut(s) | 167, 570, 934, 984 |
| BseYI | CCCAGC | 1 cut(s) | 160 |
| BshFI | GGCC | 1 cut(s) | 410 |
| BsiHKAI | GWGCWC | 1 cut(s) | 290 |
| BsiSI | CCGG | 5 cut(s) | 24, 250, 330, 648, 821 |
| BsiWI | CGTACG | 1 cut(s) | 295 |
| BslFI | GGGAC | 3 cut(s) | 222, 489, 923 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 297, 389, 517, 623, 718 |
| BsmAI | GTCTC | 1 cut(s) | 247 |
| BsmBI | CGTCTC | 1 cut(s) | 247 |
| BsmFI | GGGAC | 3 cut(s) | 222, 489, 923 |
| BsnI | GGCC | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 1 cut(s) | 290 |
| Bsp143I | GATC | 8 cut(s) | 35, 174, 184, 193, 223, 350, 600, 1060 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 395, 574 |
| BspACI | CCGC | 4 cut(s) | 101, 152, 229, 399 |
| BspANI | GGCC | 1 cut(s) | 410 |
| BspCNI | CTCAG | 2 cut(s) | 355, 568 |
| BspLI | GGNNCC | 1 cut(s) | 195 |
| BspPI | GGATC | 4 cut(s) | 30, 188, 201, 358 |
| BsrFI | RCCGGY | 1 cut(s) | 249 |
| BsrI | ACTGG | 2 cut(s) | 431, 794 |
| BssAI | RCCGGY | 1 cut(s) | 249 |
| BssECI | CCNNGG | 3 cut(s) | 22, 411, 878 |
| BssMI | GATC | 8 cut(s) | 35, 174, 184, 193, 223, 350, 600, 1060 |
| BssNI | GRCGYC | 1 cut(s) | 301 |
| BssSI | CACGAG | 1 cut(s) | 942 |
| BssT1I | CCWWGG | 1 cut(s) | 878 |
| Bst2BI | CACGAG | 1 cut(s) | 942 |
| Bst2UI | CCWGG | 3 cut(s) | 123, 412, 543 |
| Bst4CI | ACNGT | 2 cut(s) | 146, 374 |
| BstACI | GRCGYC | 1 cut(s) | 301 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 782 |
| BstBAI | YACGTR | 2 cut(s) | 295, 1029 |
| BstC8I | GCNNGC | 4 cut(s) | 251, 495, 588, 872 |
| BstDEI | CTNAG | 6 cut(s) | 85, 342, 395, 555, 574, 713 |
| BstF5I | GGATG | 5 cut(s) | 210, 271, 279, 287, 636 |
| BstH2I | RGCGCY | 1 cut(s) | 161 |
| BstHHI | GCGC | 2 cut(s) | 160, 613 |
| BstKTI | GATC | 8 cut(s) | 38, 177, 187, 196, 226, 353, 603, 1063 |
| BstMAI | GTCTC | 1 cut(s) | 247 |
| BstMBI | GATC | 8 cut(s) | 35, 174, 184, 193, 223, 350, 600, 1060 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 90, 532, 773, 782, 880, 953 |
| BstNI | CCWGG | 3 cut(s) | 123, 412, 543 |
| BstSCI | CCNGG | 5 cut(s) | 22, 121, 410, 541, 819 |
| BstSFI | CTRYAG | 2 cut(s) | 370, 1018 |
| BstSLI | GKGCMC | 1 cut(s) | 290 |
| BstSNI | TACGTA | 1 cut(s) | 295 |
| BstV1I | GCAGC | 4 cut(s) | 167, 570, 934, 984 |
| BstX2I | RGATCY | 2 cut(s) | 193, 350 |
| BstYI | RGATCY | 2 cut(s) | 193, 350 |
| BsuRI | GGCC | 1 cut(s) | 410 |
| BtgZI | GCGATG | 1 cut(s) | 725 |
| BtsCI | GGATG | 5 cut(s) | 210, 271, 279, 287, 636 |
| BtsI | GCAGTG | 1 cut(s) | 533 |
| BtsIMutI | CAGTG | 3 cut(s) | 379, 533, 563 |
| Cac8I | GCNNGC | 4 cut(s) | 251, 495, 588, 872 |
| CaiI | CAGNNNCTG | 1 cut(s) | 353 |
| CfoI | GCGC | 2 cut(s) | 160, 613 |
| Cfr10I | RCCGGY | 1 cut(s) | 249 |
| Cfr13I | GGNCC | 2 cut(s) | 408, 837 |
| CseI | GACGC | 2 cut(s) | 290, 589 |
| Csp6I | GTAC | 2 cut(s) | 11, 296 |
| CviAII | CATG | 4 cut(s) | 860, 930, 958, 1003 |
| CviQI | GTAC | 2 cut(s) | 11, 296 |
| DdeI | CTNAG | 6 cut(s) | 85, 342, 395, 555, 574, 713 |
| DpnI | GATC | 8 cut(s) | 37, 176, 186, 195, 225, 352, 602, 1062 |
| DpnII | GATC | 8 cut(s) | 35, 174, 184, 193, 223, 350, 600, 1060 |
| DraIII | CACNNNGTG | 1 cut(s) | 558 |
| Eco105I | TACGTA | 1 cut(s) | 295 |
| Eco130I | CCWWGG | 1 cut(s) | 878 |
| Eco47I | GGWCC | 1 cut(s) | 837 |
| Eco47III | AGCGCT | 1 cut(s) | 159 |
| Eco72I | CACGTG | 1 cut(s) | 1029 |
| EcoRII | CCWGG | 3 cut(s) | 121, 410, 541 |
| EcoT14I | CCWWGG | 1 cut(s) | 878 |
| ErhI | CCWWGG | 1 cut(s) | 878 |
| Esp3I | CGTCTC | 1 cut(s) | 247 |
| FaeI | CATG | 4 cut(s) | 863, 933, 961, 1006 |
| FaqI | GGGAC | 3 cut(s) | 222, 489, 923 |
| FatI | CATG | 4 cut(s) | 859, 929, 957, 1002 |
| FauI | CCCGC | 1 cut(s) | 94 |
| FbaI | TGATCA | 1 cut(s) | 600 |
| Fnu4HI | GCNGC | 5 cut(s) | 153, 156, 584, 948, 973 |
| FokI | GGATG | 5 cut(s) | 217, 278, 286, 294, 643 |
| Fsp4HI | GCNGC | 5 cut(s) | 153, 156, 584, 948, 973 |
| FspBI | CTAG | 2 cut(s) | 107, 621 |
| GlaI | GCGC | 2 cut(s) | 159, 612 |
| GluI | GCNGC | 5 cut(s) | 153, 156, 584, 948, 973 |
| GsaI | CCCAGC | 1 cut(s) | 164 |
| GsuI | CTGGAG | 3 cut(s) | 144, 375, 912 |
| HaeII | RGCGCY | 1 cut(s) | 161 |
| HaeIII | GGCC | 1 cut(s) | 410 |
| HapII | CCGG | 5 cut(s) | 24, 250, 330, 648, 821 |
| HgaI | GACGC | 2 cut(s) | 290, 589 |
| HhaI | GCGC | 2 cut(s) | 160, 613 |
| Hin1I | GRCGYC | 1 cut(s) | 301 |
| Hin1II | CATG | 4 cut(s) | 863, 933, 961, 1006 |
| Hin6I | GCGC | 2 cut(s) | 158, 611 |
| HinP1I | GCGC | 2 cut(s) | 158, 611 |
| HinfI | GANTC | 1 cut(s) | 1023 |
| HpaII | CCGG | 5 cut(s) | 24, 250, 330, 648, 821 |
| Hpy166II | GTNNAC | 2 cut(s) | 11, 288 |
| Hpy188I | TCNGA | 1 cut(s) | 179 |
| Hpy188III | TCNNGA | 3 cut(s) | 202, 354, 811 |
| Hpy8I | GTNNAC | 2 cut(s) | 11, 288 |
| Hpy99I | CGWCG | 2 cut(s) | 242, 583 |
| HpyAV | CCTTC | 1 cut(s) | 327 |
| HpyCH4III | ACNGT | 2 cut(s) | 146, 374 |
| HpyCH4IV | ACGT | 4 cut(s) | 294, 670, 831, 1028 |
| HpyCH4V | TGCA | 5 cut(s) | 288, 550, 776, 857, 1081 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 90, 532, 773, 782, 880, 953 |
| HpyF3I | CTNAG | 6 cut(s) | 85, 342, 395, 555, 574, 713 |
| HpySE526I | ACGT | 4 cut(s) | 294, 670, 831, 1028 |
| Hsp92I | GRCGYC | 1 cut(s) | 301 |
| Hsp92II | CATG | 4 cut(s) | 863, 933, 961, 1006 |
| HspAI | GCGC | 2 cut(s) | 158, 611 |
| KroI | GCCGGC | 1 cut(s) | 249 |
| KroNI | GCCGGC | 1 cut(s) | 251 |
| Ksp22I | TGATCA | 1 cut(s) | 600 |
| Kzo9I | GATC | 8 cut(s) | 35, 174, 184, 193, 223, 350, 600, 1060 |
| LmnI | GCTCC | 3 cut(s) | 125, 179, 955 |
| Lsp1109I | GCAGC | 4 cut(s) | 167, 570, 934, 984 |
| LweI | GCATC | 1 cut(s) | 693 |
| MaeI | CTAG | 2 cut(s) | 107, 621 |
| MaeII | ACGT | 4 cut(s) | 294, 670, 831, 1028 |
| MaeIII | GTNAC | 1 cut(s) | 140 |
| MalI | GATC | 8 cut(s) | 37, 176, 186, 195, 225, 352, 602, 1062 |
| MboI | GATC | 8 cut(s) | 35, 174, 184, 193, 223, 350, 600, 1060 |
| MflI | RGATCY | 2 cut(s) | 193, 350 |
| MhlI | GDGCHC | 1 cut(s) | 290 |
| MluCI | AATT | 3 cut(s) | 76, 965, 1040 |
| MroNI | GCCGGC | 1 cut(s) | 249 |
| MseI | TTAA | 1 cut(s) | 74 |
| MslI | CAYNNNNRTG | 1 cut(s) | 980 |
| MspI | CCGG | 5 cut(s) | 24, 250, 330, 648, 821 |
| MspR9I | CCNGG | 5 cut(s) | 24, 123, 412, 543, 821 |
| MvaI | CCWGG | 3 cut(s) | 123, 412, 543 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 90, 532, 773, 782, 880, 953 |
| NaeI | GCCGGC | 1 cut(s) | 251 |
| NciI | CCSGG | 2 cut(s) | 24, 821 |
| NdeII | GATC | 8 cut(s) | 35, 174, 184, 193, 223, 350, 600, 1060 |
| NgoMIV | GCCGGC | 1 cut(s) | 249 |
| NlaIII | CATG | 4 cut(s) | 863, 933, 961, 1006 |
| NlaIV | GGNNCC | 1 cut(s) | 195 |
| OliI | CACNNNNGTG | 1 cut(s) | 980 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1060 |
| PdiI | GCCGGC | 1 cut(s) | 251 |
| PfeI | GAWTC | 1 cut(s) | 1023 |
| Pfl23II | CGTACG | 1 cut(s) | 295 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 389 |
| PfoI | TCCNGGA | 1 cut(s) | 121 |
| PkrI | GCNGC | 5 cut(s) | 154, 157, 585, 949, 974 |
| PmaCI | CACGTG | 1 cut(s) | 1029 |
| PmlI | CACGTG | 1 cut(s) | 1029 |
| Ppu21I | YACGTR | 2 cut(s) | 295, 1029 |
| Psp6I | CCWGG | 3 cut(s) | 121, 410, 541 |
| PspCI | CACGTG | 1 cut(s) | 1029 |
| PspFI | CCCAGC | 1 cut(s) | 160 |
| PspGI | CCWGG | 3 cut(s) | 121, 410, 541 |
| PspLI | CGTACG | 1 cut(s) | 295 |
| PspN4I | GGNNCC | 1 cut(s) | 195 |
| PspPI | GGNCC | 2 cut(s) | 408, 837 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 24, 56 |
| PstNI | CAGNNNCTG | 1 cut(s) | 353 |
| PsuI | RGATCY | 2 cut(s) | 193, 350 |
| RsaI | GTAC | 2 cut(s) | 12, 297 |
| RsaNI | GTAC | 2 cut(s) | 11, 296 |
| RseI | CAYNNNNRTG | 1 cut(s) | 980 |
| SaqAI | TTAA | 1 cut(s) | 74 |
| SatI | GCNGC | 5 cut(s) | 153, 156, 584, 948, 973 |
| Sau3AI | GATC | 8 cut(s) | 35, 174, 184, 193, 223, 350, 600, 1060 |
| Sau96I | GGNCC | 2 cut(s) | 408, 837 |
| ScrFI | CCNGG | 5 cut(s) | 24, 123, 412, 543, 821 |
| SduI | GDGCHC | 1 cut(s) | 290 |
| SfaNI | GCATC | 1 cut(s) | 693 |
| SfcI | CTRYAG | 2 cut(s) | 370, 1018 |
| SinI | GGWCC | 1 cut(s) | 837 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 980 |
| SmlI | CTYRAG | 1 cut(s) | 915 |
| SmoI | CTYRAG | 1 cut(s) | 915 |
| SnaBI | TACGTA | 1 cut(s) | 295 |
| Sse9I | AATT | 3 cut(s) | 76, 965, 1040 |
| SsiI | CCGC | 4 cut(s) | 101, 152, 229, 399 |
| SspMI | CTAG | 2 cut(s) | 107, 621 |
| StyD4I | CCNGG | 5 cut(s) | 22, 121, 410, 541, 819 |
| StyI | CCWWGG | 1 cut(s) | 878 |
| TaaI | ACNGT | 2 cut(s) | 146, 374 |
| TaiI | ACGT | 4 cut(s) | 297, 673, 834, 1031 |
| TaqI | TCGA | 1 cut(s) | 222 |
| TasI | AATT | 3 cut(s) | 76, 965, 1040 |
| TauI | GCSGC | 1 cut(s) | 155 |
| TfiI | GAWTC | 1 cut(s) | 1023 |
| Tru1I | TTAA | 1 cut(s) | 74 |
| Tru9I | TTAA | 1 cut(s) | 74 |
| TscAI | CASTG | 3 cut(s) | 379, 533, 563 |
| TseI | GCWGC | 4 cut(s) | 155, 583, 947, 972 |
| TspDTI | ATGAA | 4 cut(s) | 647, 876, 974, 978 |
| TspGWI | ACGGA | 1 cut(s) | 649 |
| TspRI | CASTG | 3 cut(s) | 379, 533, 563 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 389 |
| VneI | GTGCAC | 1 cut(s) | 286 |
| VpaK11BI | GGWCC | 1 cut(s) | 837 |
| XapI | RAATTY | 2 cut(s) | 965, 1040 |
| XspI | CTAG | 2 cut(s) | 107, 621 |