ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 5 |
| AclWI | GGATC | 1 cut(s) | 471 |
| AcsI | RAATTY | 1 cut(s) | 289 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AfaI | GTAC | 3 cut(s) | 211, 240, 329 |
| AflIII | ACRYGT | 1 cut(s) | 490 |
| AgeI | ACCGGT | 1 cut(s) | 375 |
| AgsI | TTSAA | 1 cut(s) | 49 |
| AjiI | CACGTC | 1 cut(s) | 427 |
| AjnI | CCWGG | 1 cut(s) | 364 |
| AleI | CACNNNNGTG | 1 cut(s) | 144 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 73, 105 |
| AluBI | AGCT | 2 cut(s) | 498, 520 |
| AluI | AGCT | 2 cut(s) | 498, 520 |
| AlwI | GGATC | 1 cut(s) | 471 |
| AoxI | GGCC | 1 cut(s) | 39 |
| ApoI | RAATTY | 1 cut(s) | 289 |
| AsiGI | ACCGGT | 1 cut(s) | 375 |
| AspS9I | GGNCC | 1 cut(s) | 368 |
| AsuHPI | GGTGA | 1 cut(s) | 128 |
| AvaII | GGWCC | 1 cut(s) | 368 |
| AxyI | CCTNAGG | 1 cut(s) | 267 |
| BanII | GRGCYC | 1 cut(s) | 337 |
| BciT130I | CCWGG | 1 cut(s) | 366 |
| BfaI | CTAG | 3 cut(s) | 29, 93, 303 |
| Bme1390I | CCNGG | 1 cut(s) | 366 |
| Bme18I | GGWCC | 1 cut(s) | 368 |
| BmgBI | CACGTC | 1 cut(s) | 427 |
| BmgT120I | GGNCC | 1 cut(s) | 368 |
| BmiI | GGNNCC | 1 cut(s) | 370 |
| BmrFI | CCNGG | 1 cut(s) | 366 |
| BpmI | CTGGAG | 3 cut(s) | 100, 248, 542 |
| BpuEI | CTTGAG | 1 cut(s) | 56 |
| BsaBI | GATNNNNATC | 2 cut(s) | 222, 462 |
| BsaJI | CCNNGG | 2 cut(s) | 279, 364 |
| BsaWI | WCCGGW | 1 cut(s) | 375 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 73, 103, 365, 395 |
| Bse118I | RCCGGY | 1 cut(s) | 375 |
| Bse1I | ACTGG | 1 cut(s) | 83 |
| Bse21I | CCTNAGG | 1 cut(s) | 267 |
| Bse3DI | GCAATG | 1 cut(s) | 92 |
| Bse8I | GATNNNNATC | 2 cut(s) | 222, 462 |
| BseBI | CCWGG | 1 cut(s) | 366 |
| BseDI | CCNNGG | 2 cut(s) | 279, 364 |
| BseJI | GATNNNNATC | 2 cut(s) | 222, 462 |
| BseMI | GCAATG | 1 cut(s) | 92 |
| BseMII | CTCAG | 1 cut(s) | 281 |
| BseNI | ACTGG | 1 cut(s) | 83 |
| Bsh1285I | CGRYCG | 1 cut(s) | 376 |
| BshFI | GGCC | 1 cut(s) | 41 |
| BshTI | ACCGGT | 1 cut(s) | 375 |
| BsiEI | CGRYCG | 1 cut(s) | 376 |
| BsiSI | CCGG | 1 cut(s) | 376 |
| BsnI | GGCC | 1 cut(s) | 41 |
| Bsp1286I | GDGCHC | 1 cut(s) | 337 |
| Bsp1407I | TGTACA | 3 cut(s) | 209, 238, 327 |
| Bsp143I | GATC | 2 cut(s) | 118, 463 |
| BspANI | GGCC | 1 cut(s) | 41 |
| BspCNI | CTCAG | 1 cut(s) | 280 |
| BspHI | TCATGA | 1 cut(s) | 450 |
| BspLI | GGNNCC | 1 cut(s) | 370 |
| BspPI | GGATC | 1 cut(s) | 471 |
| BsrDI | GCAATG | 1 cut(s) | 92 |
| BsrFI | RCCGGY | 1 cut(s) | 375 |
| BsrGI | TGTACA | 3 cut(s) | 209, 238, 327 |
| BsrI | ACTGG | 1 cut(s) | 83 |
| BssAI | RCCGGY | 1 cut(s) | 375 |
| BssECI | CCNNGG | 2 cut(s) | 279, 364 |
| BssMI | GATC | 2 cut(s) | 118, 463 |
| Bst2UI | CCWGG | 1 cut(s) | 366 |
| Bst6I | CTCTTC | 1 cut(s) | 155 |
| BstAUI | TGTACA | 3 cut(s) | 209, 238, 327 |
| BstC8I | GCNNGC | 1 cut(s) | 151 |
| BstDEI | CTNAG | 2 cut(s) | 267, 353 |
| BstDSI | CCRYGG | 1 cut(s) | 279 |
| BstKTI | GATC | 2 cut(s) | 121, 466 |
| BstMBI | GATC | 2 cut(s) | 118, 463 |
| BstMCI | CGRYCG | 1 cut(s) | 376 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 38, 406 |
| BstNI | CCWGG | 1 cut(s) | 366 |
| BstNSI | RCATGY | 1 cut(s) | 494 |
| BstSCI | CCNGG | 1 cut(s) | 364 |
| Bsu36I | CCTNAGG | 1 cut(s) | 267 |
| BsuRI | GGCC | 1 cut(s) | 41 |
| BtgI | CCRYGG | 1 cut(s) | 279 |
| BtrI | CACGTC | 1 cut(s) | 427 |
| Cac8I | GCNNGC | 1 cut(s) | 151 |
| CciI | TCATGA | 1 cut(s) | 450 |
| Cfr10I | RCCGGY | 1 cut(s) | 375 |
| Cfr13I | GGNCC | 1 cut(s) | 368 |
| CseI | GACGC | 1 cut(s) | 14 |
| Csp6I | GTAC | 3 cut(s) | 210, 239, 328 |
| CspAI | ACCGGT | 1 cut(s) | 375 |
| CviAII | CATG | 5 cut(s) | 65, 71, 172, 451, 491 |
| CviJI | RGCY | 6 cut(s) | 41, 308, 335, 362, 498, 520 |
| CviKI_1 | RGCY | 6 cut(s) | 41, 308, 335, 362, 498, 520 |
| CviQI | GTAC | 3 cut(s) | 210, 239, 328 |
| DdeI | CTNAG | 2 cut(s) | 267, 353 |
| DpnI | GATC | 2 cut(s) | 120, 465 |
| DpnII | GATC | 2 cut(s) | 118, 463 |
| Eam1104I | CTCTTC | 1 cut(s) | 155 |
| EarI | CTCTTC | 1 cut(s) | 155 |
| Eco24I | GRGCYC | 1 cut(s) | 337 |
| Eco32I | GATATC | 1 cut(s) | 220 |
| Eco47I | GGWCC | 1 cut(s) | 368 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| Eco81I | CCTNAGG | 1 cut(s) | 267 |
| EcoO109I | RGGNCCY | 1 cut(s) | 368 |
| EcoRI | GAATTC | 1 cut(s) | 289 |
| EcoRII | CCWGG | 1 cut(s) | 364 |
| EcoRV | GATATC | 1 cut(s) | 220 |
| EcoT38I | GRGCYC | 1 cut(s) | 337 |
| FaeI | CATG | 5 cut(s) | 68, 74, 175, 454, 494 |
| FaiI | YATR | 9 cut(s) | 66, 72, 103, 173, 296, 452, 492, 528, 530 |
| FatI | CATG | 5 cut(s) | 64, 70, 171, 450, 490 |
| FauNDI | CATATG | 1 cut(s) | 528 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| FriOI | GRGCYC | 1 cut(s) | 337 |
| FspBI | CTAG | 3 cut(s) | 29, 93, 303 |
| GsuI | CTGGAG | 3 cut(s) | 100, 248, 542 |
| HaeIII | GGCC | 1 cut(s) | 41 |
| HapII | CCGG | 1 cut(s) | 376 |
| HgaI | GACGC | 1 cut(s) | 14 |
| Hin1II | CATG | 5 cut(s) | 68, 74, 175, 454, 494 |
| HincII | GTYRAC | 2 cut(s) | 108, 300 |
| HindII | GTYRAC | 2 cut(s) | 108, 300 |
| HinfI | GANTC | 3 cut(s) | 349, 502, 532 |
| HpaI | GTTAAC | 1 cut(s) | 108 |
| HpaII | CCGG | 1 cut(s) | 376 |
| HphI | GGTGA | 1 cut(s) | 128 |
| Hpy166II | GTNNAC | 5 cut(s) | 6, 108, 210, 300, 328 |
| Hpy188III | TCNNGA | 2 cut(s) | 227, 451 |
| Hpy8I | GTNNAC | 5 cut(s) | 6, 108, 210, 300, 328 |
| Hpy99I | CGWCG | 1 cut(s) | 477 |
| HpyAV | CCTTC | 1 cut(s) | 415 |
| HpyCH4IV | ACGT | 1 cut(s) | 426 |
| HpyCH4V | TGCA | 1 cut(s) | 149 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 38, 406 |
| HpyF3I | CTNAG | 2 cut(s) | 267, 353 |
| HpySE526I | ACGT | 1 cut(s) | 426 |
| Hsp92II | CATG | 5 cut(s) | 68, 74, 175, 454, 494 |
| KspAI | GTTAAC | 1 cut(s) | 108 |
| Kzo9I | GATC | 2 cut(s) | 118, 463 |
| LmnI | GCTCC | 1 cut(s) | 523 |
| MaeI | CTAG | 3 cut(s) | 29, 93, 303 |
| MaeII | ACGT | 1 cut(s) | 426 |
| MalI | GATC | 2 cut(s) | 120, 465 |
| MboI | GATC | 2 cut(s) | 118, 463 |
| MboII | GAAGA | 3 cut(s) | 172, 244, 329 |
| MhlI | GDGCHC | 1 cut(s) | 337 |
| MluCI | AATT | 1 cut(s) | 289 |
| MnlI | CCTC | 9 cut(s) | 31, 75, 156, 208, 237, 276, 316, 427, 454 |
| MseI | TTAA | 5 cut(s) | 107, 123, 189, 339, 480 |
| MslI | CAYNNNNRTG | 3 cut(s) | 69, 144, 284 |
| MspI | CCGG | 1 cut(s) | 376 |
| MspR9I | CCNGG | 1 cut(s) | 366 |
| MvaI | CCWGG | 1 cut(s) | 366 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 38, 406 |
| NdeI | CATATG | 1 cut(s) | 528 |
| NdeII | GATC | 2 cut(s) | 118, 463 |
| NlaIII | CATG | 5 cut(s) | 68, 74, 175, 454, 494 |
| NlaIV | GGNNCC | 1 cut(s) | 370 |
| NspI | RCATGY | 1 cut(s) | 494 |
| OliI | CACNNNNGTG | 1 cut(s) | 144 |
| PagI | TCATGA | 1 cut(s) | 450 |
| PciI | ACATGT | 1 cut(s) | 490 |
| PfeI | GAWTC | 3 cut(s) | 349, 502, 532 |
| PinAI | ACCGGT | 1 cut(s) | 375 |
| PpuMI | RGGWCCY | 1 cut(s) | 368 |
| PscI | ACATGT | 1 cut(s) | 490 |
| Psp5II | RGGWCCY | 1 cut(s) | 368 |
| Psp6I | CCWGG | 1 cut(s) | 364 |
| PspGI | CCWGG | 1 cut(s) | 364 |
| PspN4I | GGNNCC | 1 cut(s) | 370 |
| PspPI | GGNCC | 1 cut(s) | 368 |
| PspPPI | RGGWCCY | 1 cut(s) | 368 |
| RsaI | GTAC | 3 cut(s) | 211, 240, 329 |
| RsaNI | GTAC | 3 cut(s) | 210, 239, 328 |
| RseI | CAYNNNNRTG | 3 cut(s) | 69, 144, 284 |
| SaqAI | TTAA | 5 cut(s) | 107, 123, 189, 339, 480 |
| Sau3AI | GATC | 2 cut(s) | 118, 463 |
| Sau96I | GGNCC | 1 cut(s) | 368 |
| ScrFI | CCNGG | 1 cut(s) | 366 |
| SduI | GDGCHC | 1 cut(s) | 337 |
| SetI | ASST | 8 cut(s) | 16, 98, 273, 327, 429, 446, 500, 522 |
| SinI | GGWCC | 1 cut(s) | 368 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 69, 144, 284 |
| SmlI | CTYRAG | 1 cut(s) | 35 |
| SmoI | CTYRAG | 1 cut(s) | 35 |
| Sse9I | AATT | 1 cut(s) | 289 |
| SspMI | CTAG | 3 cut(s) | 29, 93, 303 |
| StyD4I | CCNGG | 1 cut(s) | 364 |
| TaiI | ACGT | 1 cut(s) | 429 |
| TasI | AATT | 1 cut(s) | 289 |
| TatI | WGTACW | 3 cut(s) | 209, 238, 327 |
| TfiI | GAWTC | 3 cut(s) | 349, 502, 532 |
| Tru1I | TTAA | 5 cut(s) | 107, 123, 189, 339, 480 |
| Tru9I | TTAA | 5 cut(s) | 107, 123, 189, 339, 480 |
| TspDTI | ATGAA | 4 cut(s) | 87, 302, 362, 439 |
| TspGWI | ACGGA | 2 cut(s) | 296, 461 |
| VpaK11BI | GGWCC | 1 cut(s) | 368 |
| XapI | RAATTY | 1 cut(s) | 289 |
| XceI | RCATGY | 1 cut(s) | 494 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XspI | CTAG | 3 cut(s) | 29, 93, 303 |