ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 143 - 323 | 1.1e-12 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1288 |
| AatII | GACGTC | 1 cut(s) | 506 |
| Acc36I | ACCTGC | 1 cut(s) | 1288 |
| AccB1I | GGYRCC | 2 cut(s) | 33, 182 |
| AciI | CCGC | 2 cut(s) | 367, 952 |
| AclWI | GGATC | 4 cut(s) | 389, 402, 417, 430 |
| AcoI | YGGCCR | 1 cut(s) | 1101 |
| AcsI | RAATTY | 3 cut(s) | 549, 932, 1277 |
| AcuI | CTGAAG | 2 cut(s) | 32, 371 |
| AcyI | GRCGYC | 1 cut(s) | 503 |
| AdeI | CACNNNGTG | 1 cut(s) | 182 |
| AfaI | GTAC | 2 cut(s) | 561, 1290 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 70, 112, 354, 419, 1352 |
| AgsI | TTSAA | 9 cut(s) | 136, 212, 220, 341, 491, 526, 1085, 1190, 1258 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 507, 729 |
| AhlI | ACTAGT | 1 cut(s) | 728 |
| AjiI | CACGTC | 1 cut(s) | 1127 |
| AjnI | CCWGG | 1 cut(s) | 425 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 255, 287, 518, 550 |
| AluBI | AGCT | 4 cut(s) | 76, 296, 1009, 1321 |
| AluI | AGCT | 4 cut(s) | 76, 296, 1009, 1321 |
| Alw26I | GTCTC | 4 cut(s) | 167, 284, 432, 730 |
| AlwI | GGATC | 4 cut(s) | 389, 402, 417, 430 |
| AoxI | GGCC | 4 cut(s) | 841, 1056, 1101, 1158 |
| ApeKI | GCWGC | 4 cut(s) | 161, 364, 372, 1333 |
| ApoI | RAATTY | 3 cut(s) | 549, 932, 1277 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 488, 520 |
| AspS9I | GGNCC | 4 cut(s) | 785, 842, 1063, 1158 |
| AsuC2I | CCSGG | 1 cut(s) | 845 |
| AsuHPI | GGTGA | 4 cut(s) | 712, 728, 1312, 1335 |
| AvaII | GGWCC | 2 cut(s) | 785, 1063 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 654, 687 |
| BalI | TGGCCA | 1 cut(s) | 1103 |
| BamHI | GGATCC | 2 cut(s) | 394, 422 |
| BanI | GGYRCC | 2 cut(s) | 33, 182 |
| BbvI | GCAGC | 4 cut(s) | 173, 359, 376, 1345 |
| BccI | CCATC | 3 cut(s) | 45, 677, 1199 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 84, 118 |
| BciT130I | CCWGG | 1 cut(s) | 427 |
| BciVI | GTATCC | 1 cut(s) | 138 |
| BclI | TGATCA | 1 cut(s) | 325 |
| BcnI | CCSGG | 1 cut(s) | 845 |
| BcoDI | GTCTC | 4 cut(s) | 167, 284, 432, 730 |
| BcuI | ACTAGT | 1 cut(s) | 728 |
| BfaI | CTAG | 2 cut(s) | 188, 729 |
| BfuAI | ACCTGC | 1 cut(s) | 1288 |
| BfuI | GTATCC | 1 cut(s) | 138 |
| BglII | AGATCT | 2 cut(s) | 448, 854 |
| BisI | GCNGC | 4 cut(s) | 162, 365, 373, 1334 |
| BlsI | GCNGC | 4 cut(s) | 163, 366, 374, 1335 |
| Bme1390I | CCNGG | 2 cut(s) | 427, 845 |
| Bme18I | GGWCC | 2 cut(s) | 785, 1063 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 507, 729 |
| BmgBI | CACGTC | 1 cut(s) | 1127 |
| BmgT120I | GGNCC | 4 cut(s) | 785, 842, 1063, 1158 |
| BmiI | GGNNCC | 5 cut(s) | 35, 184, 396, 424, 786 |
| BmrFI | CCNGG | 2 cut(s) | 427, 845 |
| BmsI | GCATC | 3 cut(s) | 79, 353, 952 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1068 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| BpuMI | CCSGG | 1 cut(s) | 845 |
| BsaHI | GRCGYC | 1 cut(s) | 503 |
| BsaI | GGTCTC | 1 cut(s) | 432 |
| BsaJI | CCNNGG | 4 cut(s) | 788, 888, 1059, 1161 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1157, 1187 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 70, 112, 354, 419, 1352 |
| Bse1I | ACTGG | 1 cut(s) | 844 |
| Bse3DI | GCAATG | 1 cut(s) | 394 |
| BseBI | CCWGG | 1 cut(s) | 427 |
| BseDI | CCNNGG | 4 cut(s) | 788, 888, 1059, 1161 |
| BseGI | GGATG | 4 cut(s) | 344, 453, 550, 688 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 70, 112, 354, 419, 1352 |
| BseMI | GCAATG | 1 cut(s) | 394 |
| BseMII | CTCAG | 3 cut(s) | 390, 603, 1239 |
| BseNI | ACTGG | 1 cut(s) | 844 |
| BseRI | GAGGAG | 3 cut(s) | 1181, 1184, 1339 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BseXI | GCAGC | 4 cut(s) | 173, 359, 376, 1345 |
| BseYI | CCCAGC | 1 cut(s) | 770 |
| BsgI | GTGCAG | 1 cut(s) | 383 |
| BshFI | GGCC | 4 cut(s) | 843, 1058, 1103, 1160 |
| BshNI | GGYRCC | 2 cut(s) | 33, 182 |
| BsiSI | CCGG | 1 cut(s) | 845 |
| BslFI | GGGAC | 1 cut(s) | 798 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 70, 112, 354, 419, 1352 |
| BsmAI | GTCTC | 4 cut(s) | 167, 284, 432, 730 |
| BsmFI | GGGAC | 1 cut(s) | 798 |
| BsnI | GGCC | 4 cut(s) | 843, 1058, 1103, 1160 |
| Bso31I | GGTCTC | 1 cut(s) | 432 |
| Bsp1286I | GDGCHC | 1 cut(s) | 187 |
| Bsp143I | GATC | 5 cut(s) | 325, 394, 422, 448, 854 |
| BspACI | CCGC | 2 cut(s) | 367, 952 |
| BspANI | GGCC | 4 cut(s) | 843, 1058, 1103, 1160 |
| BspCNI | CTCAG | 3 cut(s) | 391, 602, 1240 |
| BspLI | GGNNCC | 5 cut(s) | 35, 184, 396, 424, 786 |
| BspMI | ACCTGC | 1 cut(s) | 1288 |
| BspPI | GGATC | 4 cut(s) | 389, 402, 417, 430 |
| BspT107I | GGYRCC | 2 cut(s) | 33, 182 |
| BspTNI | GGTCTC | 1 cut(s) | 432 |
| BsrDI | GCAATG | 1 cut(s) | 394 |
| BsrI | ACTGG | 1 cut(s) | 844 |
| BssECI | CCNNGG | 4 cut(s) | 788, 888, 1059, 1161 |
| BssMI | GATC | 5 cut(s) | 325, 394, 422, 448, 854 |
| BssNI | GRCGYC | 1 cut(s) | 503 |
| BssT1I | CCWWGG | 3 cut(s) | 788, 888, 1161 |
| Bst2UI | CCWGG | 1 cut(s) | 427 |
| Bst4CI | ACNGT | 2 cut(s) | 628, 1217 |
| Bst6I | CTCTTC | 1 cut(s) | 1361 |
| BstACI | GRCGYC | 1 cut(s) | 503 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 98 |
| BstC8I | GCNNGC | 2 cut(s) | 103, 885 |
| BstDEI | CTNAG | 4 cut(s) | 399, 589, 1248, 1390 |
| BstF5I | GGATG | 4 cut(s) | 344, 453, 550, 688 |
| BstKTI | GATC | 5 cut(s) | 328, 397, 425, 451, 857 |
| BstMAI | GTCTC | 4 cut(s) | 167, 284, 432, 730 |
| BstMBI | GATC | 5 cut(s) | 325, 394, 422, 448, 854 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 98 |
| BstNI | CCWGG | 1 cut(s) | 427 |
| BstNSI | RCATGY | 1 cut(s) | 887 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1068 |
| BstSCI | CCNGG | 2 cut(s) | 425, 843 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstV1I | GCAGC | 4 cut(s) | 173, 359, 376, 1345 |
| BstX2I | RGATCY | 4 cut(s) | 394, 422, 448, 854 |
| BstYI | RGATCY | 4 cut(s) | 394, 422, 448, 854 |
| BsuI | GTATCC | 1 cut(s) | 138 |
| BsuRI | GGCC | 4 cut(s) | 843, 1058, 1103, 1160 |
| BtgZI | GCGATG | 1 cut(s) | 975 |
| BtrI | CACGTC | 1 cut(s) | 1127 |
| BtsCI | GGATG | 4 cut(s) | 344, 453, 550, 688 |
| BveI | ACCTGC | 1 cut(s) | 1288 |
| Cac8I | GCNNGC | 2 cut(s) | 103, 885 |
| Cfr13I | GGNCC | 4 cut(s) | 785, 842, 1063, 1158 |
| CseI | GACGC | 1 cut(s) | 1325 |
| Csp6I | GTAC | 2 cut(s) | 560, 1289 |
| CviAII | CATG | 7 cut(s) | 179, 675, 747, 884, 939, 1197, 1360 |
| CviQI | GTAC | 2 cut(s) | 560, 1289 |
| DdeI | CTNAG | 4 cut(s) | 399, 589, 1248, 1390 |
| DpnI | GATC | 5 cut(s) | 327, 396, 424, 450, 856 |
| DpnII | GATC | 5 cut(s) | 325, 394, 422, 448, 854 |
| DraIII | CACNNNGTG | 1 cut(s) | 182 |
| DriI | GACNNNNNGTC | 2 cut(s) | 507, 729 |
| EaeI | YGGCCR | 1 cut(s) | 1101 |
| Eam1104I | CTCTTC | 1 cut(s) | 1361 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 507, 729 |
| EarI | CTCTTC | 1 cut(s) | 1361 |
| Eco130I | CCWWGG | 3 cut(s) | 788, 888, 1161 |
| Eco31I | GGTCTC | 1 cut(s) | 432 |
| Eco47I | GGWCC | 2 cut(s) | 785, 1063 |
| Eco57I | CTGAAG | 2 cut(s) | 32, 371 |
| EcoO109I | RGGNCCY | 1 cut(s) | 785 |
| EcoRII | CCWGG | 1 cut(s) | 425 |
| EcoT14I | CCWWGG | 3 cut(s) | 788, 888, 1161 |
| ErhI | CCWWGG | 3 cut(s) | 788, 888, 1161 |
| FaeI | CATG | 7 cut(s) | 182, 678, 750, 887, 942, 1200, 1363 |
| FaqI | GGGAC | 1 cut(s) | 798 |
| FatI | CATG | 7 cut(s) | 178, 674, 746, 883, 938, 1196, 1359 |
| FauI | CCCGC | 2 cut(s) | 360, 945 |
| FbaI | TGATCA | 1 cut(s) | 325 |
| Fnu4HI | GCNGC | 4 cut(s) | 162, 365, 373, 1334 |
| FokI | GGATG | 4 cut(s) | 331, 440, 557, 695 |
| Fsp4HI | GCNGC | 4 cut(s) | 162, 365, 373, 1334 |
| FspBI | CTAG | 2 cut(s) | 188, 729 |
| GluI | GCNGC | 4 cut(s) | 162, 365, 373, 1334 |
| GsaI | CCCAGC | 1 cut(s) | 774 |
| HaeIII | GGCC | 4 cut(s) | 843, 1058, 1103, 1160 |
| HapII | CCGG | 1 cut(s) | 845 |
| HgaI | GACGC | 1 cut(s) | 1325 |
| Hin1I | GRCGYC | 1 cut(s) | 503 |
| Hin1II | CATG | 7 cut(s) | 182, 678, 750, 887, 942, 1200, 1363 |
| HincII | GTYRAC | 1 cut(s) | 829 |
| HindII | GTYRAC | 1 cut(s) | 829 |
| HinfI | GANTC | 4 cut(s) | 108, 719, 1029, 1356 |
| HpaII | CCGG | 1 cut(s) | 845 |
| HphI | GGTGA | 4 cut(s) | 712, 728, 1312, 1335 |
| Hpy166II | GTNNAC | 3 cut(s) | 829, 1091, 1289 |
| Hpy188I | TCNGA | 4 cut(s) | 414, 437, 735, 1063 |
| Hpy188III | TCNNGA | 4 cut(s) | 287, 398, 1016, 1353 |
| Hpy8I | GTNNAC | 3 cut(s) | 829, 1091, 1289 |
| Hpy99I | CGWCG | 2 cut(s) | 508, 1296 |
| HpyAV | CCTTC | 7 cut(s) | 135, 214, 257, 967, 1128, 1233, 1365 |
| HpyCH4III | ACNGT | 2 cut(s) | 628, 1217 |
| HpyCH4IV | ACGT | 7 cut(s) | 409, 431, 503, 532, 1087, 1126, 1291 |
| HpyCH4V | TGCA | 6 cut(s) | 82, 92, 364, 917, 1333, 1363 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 98 |
| HpyF3I | CTNAG | 4 cut(s) | 399, 589, 1248, 1390 |
| HpySE526I | ACGT | 7 cut(s) | 409, 431, 503, 532, 1087, 1126, 1291 |
| Hsp92I | GRCGYC | 1 cut(s) | 503 |
| Hsp92II | CATG | 7 cut(s) | 182, 678, 750, 887, 942, 1200, 1363 |
| Ksp22I | TGATCA | 1 cut(s) | 325 |
| Kzo9I | GATC | 5 cut(s) | 325, 394, 422, 448, 854 |
| LmnI | GCTCC | 3 cut(s) | 73, 775, 1318 |
| Lsp1109I | GCAGC | 4 cut(s) | 173, 359, 376, 1345 |
| LweI | GCATC | 3 cut(s) | 79, 353, 952 |
| MaeI | CTAG | 2 cut(s) | 188, 729 |
| MaeII | ACGT | 7 cut(s) | 409, 431, 503, 532, 1087, 1126, 1291 |
| MaeIII | GTNAC | 7 cut(s) | 528, 584, 670, 700, 1048, 1211, 1300 |
| MalI | GATC | 5 cut(s) | 327, 396, 424, 450, 856 |
| MboI | GATC | 5 cut(s) | 325, 394, 422, 448, 854 |
| MboII | GAAGA | 4 cut(s) | 508, 633, 1143, 1378 |
| MflI | RGATCY | 4 cut(s) | 394, 422, 448, 854 |
| MhlI | GDGCHC | 1 cut(s) | 187 |
| MlsI | TGGCCA | 1 cut(s) | 1103 |
| MluNI | TGGCCA | 1 cut(s) | 1103 |
| MmeI | TCCRAC | 1 cut(s) | 384 |
| Mox20I | TGGCCA | 1 cut(s) | 1103 |
| MscI | TGGCCA | 1 cut(s) | 1103 |
| MseI | TTAA | 4 cut(s) | 12, 810, 1310, 1386 |
| Msp20I | TGGCCA | 1 cut(s) | 1103 |
| MspA1I | CMGCKG | 1 cut(s) | 367 |
| MspI | CCGG | 1 cut(s) | 845 |
| MspR9I | CCNGG | 2 cut(s) | 427, 845 |
| MvaI | CCWGG | 1 cut(s) | 427 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 98 |
| NciI | CCSGG | 1 cut(s) | 845 |
| NdeII | GATC | 5 cut(s) | 325, 394, 422, 448, 854 |
| NlaIII | CATG | 7 cut(s) | 182, 678, 750, 887, 942, 1200, 1363 |
| NlaIV | GGNNCC | 5 cut(s) | 35, 184, 396, 424, 786 |
| NmuCI | GTSAC | 4 cut(s) | 528, 700, 1048, 1300 |
| NspI | RCATGY | 1 cut(s) | 887 |
| PaeI | GCATGC | 1 cut(s) | 887 |
| PaqCI | CACCTGC | 1 cut(s) | 1288 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 500 |
| PfeI | GAWTC | 4 cut(s) | 108, 719, 1029, 1356 |
| PfoI | TCCNGGA | 1 cut(s) | 425 |
| PkrI | GCNGC | 4 cut(s) | 163, 366, 374, 1335 |
| PpuMI | RGGWCCY | 1 cut(s) | 785 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1068 |
| Psp5II | RGGWCCY | 1 cut(s) | 785 |
| Psp6I | CCWGG | 1 cut(s) | 425 |
| PspFI | CCCAGC | 1 cut(s) | 770 |
| PspGI | CCWGG | 1 cut(s) | 425 |
| PspN4I | GGNNCC | 5 cut(s) | 35, 184, 396, 424, 786 |
| PspPI | GGNCC | 4 cut(s) | 785, 842, 1063, 1158 |
| PspPPI | RGGWCCY | 1 cut(s) | 785 |
| PsuI | RGATCY | 4 cut(s) | 394, 422, 448, 854 |
| RsaI | GTAC | 2 cut(s) | 561, 1290 |
| RsaNI | GTAC | 2 cut(s) | 560, 1289 |
| SaqAI | TTAA | 4 cut(s) | 12, 810, 1310, 1386 |
| SatI | GCNGC | 4 cut(s) | 162, 365, 373, 1334 |
| Sau3AI | GATC | 5 cut(s) | 325, 394, 422, 448, 854 |
| Sau96I | GGNCC | 4 cut(s) | 785, 842, 1063, 1158 |
| ScrFI | CCNGG | 2 cut(s) | 427, 845 |
| SduI | GDGCHC | 1 cut(s) | 187 |
| SfaNI | GCATC | 3 cut(s) | 79, 353, 952 |
| SinI | GGWCC | 2 cut(s) | 785, 1063 |
| SmlI | CTYRAG | 1 cut(s) | 156 |
| SmoI | CTYRAG | 1 cut(s) | 156 |
| SpeI | ACTAGT | 1 cut(s) | 728 |
| SphI | GCATGC | 1 cut(s) | 887 |
| SsiI | CCGC | 2 cut(s) | 367, 952 |
| SspMI | CTAG | 2 cut(s) | 188, 729 |
| StyD4I | CCNGG | 2 cut(s) | 425, 843 |
| StyI | CCWWGG | 3 cut(s) | 788, 888, 1161 |
| TaaI | ACNGT | 2 cut(s) | 628, 1217 |
| TaiI | ACGT | 7 cut(s) | 412, 434, 506, 535, 1090, 1129, 1294 |
| TaqI | TCGA | 4 cut(s) | 40, 196, 644, 722 |
| TfiI | GAWTC | 4 cut(s) | 108, 719, 1029, 1356 |
| Tru1I | TTAA | 4 cut(s) | 12, 810, 1310, 1386 |
| Tru9I | TTAA | 4 cut(s) | 12, 810, 1310, 1386 |
| TseFI | GTSAC | 4 cut(s) | 528, 700, 1048, 1300 |
| TseI | GCWGC | 4 cut(s) | 161, 364, 372, 1333 |
| Tsp45I | GTSAC | 4 cut(s) | 528, 700, 1048, 1300 |
| TspDTI | ATGAA | 4 cut(s) | 33, 561, 585, 945 |
| TspGWI | ACGGA | 1 cut(s) | 446 |
| VpaK11BI | GGWCC | 2 cut(s) | 785, 1063 |
| XapI | RAATTY | 3 cut(s) | 549, 932, 1277 |
| XceI | RCATGY | 1 cut(s) | 887 |
| XspI | CTAG | 2 cut(s) | 188, 729 |
| ZraI | GACGTC | 1 cut(s) | 504 |