ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 279 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 222 |
| AclWI | GGATC | 1 cut(s) | 360 |
| AcoI | YGGCCR | 1 cut(s) | 213 |
| AcyI | GRCGYC | 1 cut(s) | 276 |
| AfaI | GTAC | 1 cut(s) | 243 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 222, 306 |
| AflIII | ACRYGT | 1 cut(s) | 244 |
| AjnI | CCWGG | 2 cut(s) | 210, 340 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 32 |
| AleI | CACNNNNGTG | 1 cut(s) | 130 |
| AluBI | AGCT | 4 cut(s) | 177, 335, 367, 383 |
| AluI | AGCT | 4 cut(s) | 177, 335, 367, 383 |
| Alw21I | GWGCWC | 1 cut(s) | 137 |
| Alw26I | GTCTC | 1 cut(s) | 190 |
| Alw44I | GTGCAC | 1 cut(s) | 133 |
| AlwI | GGATC | 1 cut(s) | 360 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 211 |
| AoxI | GGCC | 2 cut(s) | 208, 213 |
| ApaLI | GTGCAC | 1 cut(s) | 133 |
| ApeKI | GCWGC | 3 cut(s) | 335, 364, 383 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 256 |
| AspS9I | GGNCC | 1 cut(s) | 208 |
| AxyI | CCTNAGG | 1 cut(s) | 192 |
| BaeGI | GKGCMC | 1 cut(s) | 137 |
| BalI | TGGCCA | 1 cut(s) | 215 |
| BanII | GRGCYC | 1 cut(s) | 67 |
| Bbv12I | GWGCWC | 1 cut(s) | 137 |
| BbvI | GCAGC | 3 cut(s) | 322, 370, 376 |
| BceAI | ACGGC | 1 cut(s) | 170 |
| BciT130I | CCWGG | 2 cut(s) | 212, 342 |
| BcoDI | GTCTC | 1 cut(s) | 190 |
| BfaI | CTAG | 3 cut(s) | 68, 122, 380 |
| BfmI | CTRYAG | 1 cut(s) | 31 |
| BglII | AGATCT | 1 cut(s) | 303 |
| BisI | GCNGC | 3 cut(s) | 336, 365, 384 |
| BlsI | GCNGC | 3 cut(s) | 337, 366, 385 |
| Bme1390I | CCNGG | 2 cut(s) | 212, 342 |
| BmgT120I | GGNCC | 1 cut(s) | 208 |
| BmrFI | CCNGG | 2 cut(s) | 212, 342 |
| BmsI | GCATC | 2 cut(s) | 190, 364 |
| BpmI | CTGGAG | 1 cut(s) | 363 |
| BsaHI | GRCGYC | 1 cut(s) | 276 |
| BsaJI | CCNNGG | 2 cut(s) | 7, 340 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 222, 306 |
| Bse1I | ACTGG | 1 cut(s) | 322 |
| Bse21I | CCTNAGG | 1 cut(s) | 192 |
| BseBI | CCWGG | 2 cut(s) | 212, 342 |
| BseDI | CCNNGG | 2 cut(s) | 7, 340 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 222, 306 |
| BseMII | CTCAG | 1 cut(s) | 183 |
| BseNI | ACTGG | 1 cut(s) | 322 |
| BseSI | GKGCMC | 1 cut(s) | 137 |
| BseXI | GCAGC | 3 cut(s) | 322, 370, 376 |
| BshFI | GGCC | 2 cut(s) | 210, 215 |
| BsiHKAI | GWGCWC | 1 cut(s) | 137 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 222, 306 |
| BsmAI | GTCTC | 1 cut(s) | 190 |
| BsmI | GAATGC | 1 cut(s) | 52 |
| BsnI | GGCC | 2 cut(s) | 210, 215 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 137 |
| Bsp1407I | TGTACA | 1 cut(s) | 241 |
| Bsp143I | GATC | 2 cut(s) | 303, 352 |
| BspANI | GGCC | 2 cut(s) | 210, 215 |
| BspCNI | CTCAG | 1 cut(s) | 184 |
| BspMAI | CTGCAG | 1 cut(s) | 35 |
| BspPI | GGATC | 1 cut(s) | 360 |
| BsrGI | TGTACA | 1 cut(s) | 241 |
| BsrI | ACTGG | 1 cut(s) | 322 |
| BssECI | CCNNGG | 2 cut(s) | 7, 340 |
| BssMI | GATC | 2 cut(s) | 303, 352 |
| BssNI | GRCGYC | 1 cut(s) | 276 |
| BssT1I | CCWWGG | 1 cut(s) | 7 |
| Bst2UI | CCWGG | 2 cut(s) | 212, 342 |
| BstACI | GRCGYC | 1 cut(s) | 276 |
| BstAUI | TGTACA | 1 cut(s) | 241 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 1 cut(s) | 192 |
| BstKTI | GATC | 2 cut(s) | 306, 355 |
| BstMAI | GTCTC | 1 cut(s) | 190 |
| BstMBI | GATC | 2 cut(s) | 303, 352 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 327, 383 |
| BstNI | CCWGG | 2 cut(s) | 212, 342 |
| BstNSI | RCATGY | 1 cut(s) | 248 |
| BstSCI | CCNGG | 2 cut(s) | 210, 340 |
| BstSFI | CTRYAG | 1 cut(s) | 31 |
| BstSLI | GKGCMC | 1 cut(s) | 137 |
| BstV1I | GCAGC | 3 cut(s) | 322, 370, 376 |
| BstX2I | RGATCY | 1 cut(s) | 303 |
| BstYI | RGATCY | 1 cut(s) | 303 |
| Bsu36I | CCTNAGG | 1 cut(s) | 192 |
| BsuRI | GGCC | 2 cut(s) | 210, 215 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| CaiI | CAGNNNCTG | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 1 cut(s) | 208 |
| Csp6I | GTAC | 1 cut(s) | 242 |
| CviAII | CATG | 4 cut(s) | 79, 239, 245, 360 |
| CviJI | RGCY | 8 cut(s) | 65, 177, 210, 215, 255, 335, 367, 383 |
| CviKI_1 | RGCY | 8 cut(s) | 65, 177, 210, 215, 255, 335, 367, 383 |
| CviQI | GTAC | 1 cut(s) | 242 |
| DdeI | CTNAG | 1 cut(s) | 192 |
| DpnI | GATC | 2 cut(s) | 305, 354 |
| DpnII | GATC | 2 cut(s) | 303, 352 |
| EaeI | YGGCCR | 1 cut(s) | 213 |
| Eco130I | CCWWGG | 1 cut(s) | 7 |
| Eco24I | GRGCYC | 1 cut(s) | 67 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco81I | CCTNAGG | 1 cut(s) | 192 |
| EcoO109I | RGGNCCY | 1 cut(s) | 208 |
| EcoRII | CCWGG | 2 cut(s) | 210, 340 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 7 |
| EcoT38I | GRGCYC | 1 cut(s) | 67 |
| ErhI | CCWWGG | 1 cut(s) | 7 |
| FaeI | CATG | 4 cut(s) | 82, 242, 248, 363 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FatI | CATG | 4 cut(s) | 78, 238, 244, 359 |
| Fnu4HI | GCNGC | 3 cut(s) | 336, 365, 384 |
| FriOI | GRGCYC | 1 cut(s) | 67 |
| Fsp4HI | GCNGC | 3 cut(s) | 336, 365, 384 |
| FspBI | CTAG | 3 cut(s) | 68, 122, 380 |
| GluI | GCNGC | 3 cut(s) | 336, 365, 384 |
| GsuI | CTGGAG | 1 cut(s) | 363 |
| HaeIII | GGCC | 2 cut(s) | 210, 215 |
| Hin1I | GRCGYC | 1 cut(s) | 276 |
| Hin1II | CATG | 4 cut(s) | 82, 242, 248, 363 |
| HinfI | GANTC | 1 cut(s) | 143 |
| Hpy166II | GTNNAC | 1 cut(s) | 135 |
| Hpy188I | TCNGA | 1 cut(s) | 115 |
| Hpy188III | TCNNGA | 1 cut(s) | 191 |
| Hpy8I | GTNNAC | 1 cut(s) | 135 |
| Hpy99I | CGWCG | 1 cut(s) | 281 |
| HpyAV | CCTTC | 1 cut(s) | 342 |
| HpyCH4IV | ACGT | 1 cut(s) | 276 |
| HpyCH4V | TGCA | 3 cut(s) | 33, 135, 203 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 327, 383 |
| HpyF3I | CTNAG | 1 cut(s) | 192 |
| HpySE526I | ACGT | 1 cut(s) | 276 |
| Hsp92I | GRCGYC | 1 cut(s) | 276 |
| Hsp92II | CATG | 4 cut(s) | 82, 242, 248, 363 |
| Kzo9I | GATC | 2 cut(s) | 303, 352 |
| LmnI | GCTCC | 1 cut(s) | 9 |
| LpnPI | CCDG | 9 cut(s) | 5, 191, 197, 204, 224, 292, 303, 327, 354 |
| Lsp1109I | GCAGC | 3 cut(s) | 322, 370, 376 |
| LweI | GCATC | 2 cut(s) | 190, 364 |
| MaeI | CTAG | 3 cut(s) | 68, 122, 380 |
| MaeII | ACGT | 1 cut(s) | 276 |
| MalI | GATC | 2 cut(s) | 305, 354 |
| MboI | GATC | 2 cut(s) | 303, 352 |
| MboII | GAAGA | 2 cut(s) | 100, 209 |
| MflI | RGATCY | 1 cut(s) | 303 |
| MhlI | GDGCHC | 2 cut(s) | 67, 137 |
| MlsI | TGGCCA | 1 cut(s) | 215 |
| MluNI | TGGCCA | 1 cut(s) | 215 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MnlI | CCTC | 5 cut(s) | 29, 187, 223, 274, 338 |
| Mox20I | TGGCCA | 1 cut(s) | 215 |
| MroXI | GAANNNNTTC | 1 cut(s) | 256 |
| MscI | TGGCCA | 1 cut(s) | 215 |
| MseI | TTAA | 2 cut(s) | 168, 264 |
| MslI | CAYNNNNRTG | 2 cut(s) | 130, 243 |
| Msp20I | TGGCCA | 1 cut(s) | 215 |
| MspA1I | CMGCKG | 1 cut(s) | 367 |
| MspR9I | CCNGG | 2 cut(s) | 212, 342 |
| Mva1269I | GAATGC | 1 cut(s) | 52 |
| MvaI | CCWGG | 2 cut(s) | 212, 342 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 327, 383 |
| NdeII | GATC | 2 cut(s) | 303, 352 |
| NlaIII | CATG | 4 cut(s) | 82, 242, 248, 363 |
| NspI | RCATGY | 1 cut(s) | 248 |
| OliI | CACNNNNGTG | 1 cut(s) | 130 |
| PciI | ACATGT | 1 cut(s) | 244 |
| PctI | GAATGC | 1 cut(s) | 52 |
| PdmI | GAANNNNTTC | 1 cut(s) | 256 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 222 |
| PkrI | GCNGC | 3 cut(s) | 337, 366, 385 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| PscI | ACATGT | 1 cut(s) | 244 |
| Psp6I | CCWGG | 2 cut(s) | 210, 340 |
| PspGI | CCWGG | 2 cut(s) | 210, 340 |
| PspPI | GGNCC | 1 cut(s) | 208 |
| PstI | CTGCAG | 1 cut(s) | 35 |
| PstNI | CAGNNNCTG | 1 cut(s) | 211 |
| PsuI | RGATCY | 1 cut(s) | 303 |
| PvuII | CAGCTG | 1 cut(s) | 367 |
| RsaI | GTAC | 1 cut(s) | 243 |
| RsaNI | GTAC | 1 cut(s) | 242 |
| RseI | CAYNNNNRTG | 2 cut(s) | 130, 243 |
| SaqAI | TTAA | 2 cut(s) | 168, 264 |
| SatI | GCNGC | 3 cut(s) | 336, 365, 384 |
| Sau3AI | GATC | 2 cut(s) | 303, 352 |
| Sau96I | GGNCC | 1 cut(s) | 208 |
| SchI | GAGTC | 1 cut(s) | 137 |
| ScrFI | CCNGG | 2 cut(s) | 212, 342 |
| SduI | GDGCHC | 2 cut(s) | 67, 137 |
| SetI | ASST | 7 cut(s) | 101, 179, 279, 285, 337, 369, 385 |
| SfaNI | GCATC | 2 cut(s) | 190, 364 |
| SfcI | CTRYAG | 1 cut(s) | 31 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 130, 243 |
| SspMI | CTAG | 3 cut(s) | 68, 122, 380 |
| StyD4I | CCNGG | 2 cut(s) | 210, 340 |
| StyI | CCWWGG | 1 cut(s) | 7 |
| TaiI | ACGT | 1 cut(s) | 279 |
| TaqI | TCGA | 1 cut(s) | 279 |
| TatI | WGTACW | 1 cut(s) | 241 |
| Tru1I | TTAA | 2 cut(s) | 168, 264 |
| Tru9I | TTAA | 2 cut(s) | 168, 264 |
| TseI | GCWGC | 3 cut(s) | 335, 364, 383 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 222 |
| VneI | GTGCAC | 1 cut(s) | 133 |
| XceI | RCATGY | 1 cut(s) | 248 |
| XmnI | GAANNNNTTC | 1 cut(s) | 256 |
| XspI | CTAG | 3 cut(s) | 68, 122, 380 |
| ZraI | GACGTC | 1 cut(s) | 277 |