ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 558 |
| AclWI | GGATC | 1 cut(s) | 462 |
| AdeI | CACNNNGTG | 1 cut(s) | 263 |
| AfaI | GTAC | 2 cut(s) | 33, 413 |
| AfeI | AGCGCT | 1 cut(s) | 827 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 379, 500, 596 |
| AgsI | TTSAA | 2 cut(s) | 217, 707 |
| AjnI | CCWGG | 2 cut(s) | 194, 231 |
| AluBI | AGCT | 2 cut(s) | 293, 715 |
| AluI | AGCT | 2 cut(s) | 293, 715 |
| Alw21I | GWGCWC | 1 cut(s) | 432 |
| Alw26I | GTCTC | 4 cut(s) | 11, 41, 596, 814 |
| AlwI | GGATC | 1 cut(s) | 462 |
| Aor51HI | AGCGCT | 1 cut(s) | 827 |
| AoxI | GGCC | 4 cut(s) | 250, 348, 491, 609 |
| ApeKI | GCWGC | 1 cut(s) | 176 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 281 |
| AspLEI | GCGC | 1 cut(s) | 828 |
| AspS9I | GGNCC | 4 cut(s) | 251, 348, 610, 669 |
| AsuC2I | CCSGG | 1 cut(s) | 208 |
| AsuHPI | GGTGA | 3 cut(s) | 100, 352, 731 |
| AvaII | GGWCC | 1 cut(s) | 669 |
| Bbv12I | GWGCWC | 1 cut(s) | 432 |
| BbvI | GCAGC | 1 cut(s) | 188 |
| BceAI | ACGGC | 2 cut(s) | 150, 506 |
| BciT130I | CCWGG | 2 cut(s) | 196, 233 |
| BclI | TGATCA | 1 cut(s) | 736 |
| BcnI | CCSGG | 1 cut(s) | 208 |
| BcoDI | GTCTC | 4 cut(s) | 11, 41, 596, 814 |
| BfaI | CTAG | 3 cut(s) | 173, 374, 701 |
| BfoI | RGCGCY | 1 cut(s) | 829 |
| BisI | GCNGC | 1 cut(s) | 177 |
| BlsI | GCNGC | 1 cut(s) | 178 |
| Bme1390I | CCNGG | 3 cut(s) | 196, 208, 233 |
| Bme18I | GGWCC | 1 cut(s) | 669 |
| BmgT120I | GGNCC | 4 cut(s) | 251, 348, 610, 669 |
| BmiI | GGNNCC | 3 cut(s) | 643, 670, 770 |
| BmrFI | CCNGG | 3 cut(s) | 196, 208, 233 |
| BmsI | GCATC | 1 cut(s) | 55 |
| BpmI | CTGGAG | 4 cut(s) | 34, 480, 737, 758 |
| BpuMI | CCSGG | 1 cut(s) | 208 |
| Bsa29I | ATCGAT | 1 cut(s) | 280 |
| BsaI | GGTCTC | 1 cut(s) | 11 |
| BsaJI | CCNNGG | 2 cut(s) | 194, 207 |
| BsaWI | WCCGGW | 1 cut(s) | 638 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 404, 434 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 379, 500, 596 |
| Bse118I | RCCGGY | 1 cut(s) | 110 |
| Bse1I | ACTGG | 2 cut(s) | 397, 775 |
| BseBI | CCWGG | 2 cut(s) | 196, 233 |
| BseCI | ATCGAT | 1 cut(s) | 280 |
| BseDI | CCNNGG | 2 cut(s) | 194, 207 |
| BseGI | GGATG | 1 cut(s) | 588 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 379, 500, 596 |
| BseMII | CTCAG | 4 cut(s) | 52, 178, 457, 533 |
| BseNI | ACTGG | 2 cut(s) | 397, 775 |
| BseXI | GCAGC | 1 cut(s) | 188 |
| BsgI | GTGCAG | 1 cut(s) | 240 |
| Bsh1285I | CGRYCG | 1 cut(s) | 452 |
| BshFI | GGCC | 4 cut(s) | 252, 350, 493, 611 |
| BshVI | ATCGAT | 1 cut(s) | 280 |
| BsiEI | CGRYCG | 1 cut(s) | 452 |
| BsiHKAI | GWGCWC | 1 cut(s) | 432 |
| BsiSI | CCGG | 3 cut(s) | 111, 207, 639 |
| BslFI | GGGAC | 2 cut(s) | 224, 682 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 379, 500, 596 |
| BsmAI | GTCTC | 4 cut(s) | 11, 41, 596, 814 |
| BsmBI | CGTCTC | 1 cut(s) | 41 |
| BsmFI | GGGAC | 2 cut(s) | 224, 682 |
| BsnI | GGCC | 4 cut(s) | 252, 350, 493, 611 |
| Bso31I | GGTCTC | 1 cut(s) | 11 |
| Bsp1286I | GDGCHC | 1 cut(s) | 432 |
| Bsp143I | GATC | 4 cut(s) | 454, 627, 736, 762 |
| BspACI | CCGC | 1 cut(s) | 558 |
| BspANI | GGCC | 4 cut(s) | 252, 350, 493, 611 |
| BspCNI | CTCAG | 4 cut(s) | 51, 177, 456, 534 |
| BspDI | ATCGAT | 1 cut(s) | 280 |
| BspLI | GGNNCC | 3 cut(s) | 643, 670, 770 |
| BspPI | GGATC | 1 cut(s) | 462 |
| BspTNI | GGTCTC | 1 cut(s) | 11 |
| BsrFI | RCCGGY | 1 cut(s) | 110 |
| BsrI | ACTGG | 2 cut(s) | 397, 775 |
| BssAI | RCCGGY | 1 cut(s) | 110 |
| BssECI | CCNNGG | 2 cut(s) | 194, 207 |
| BssMI | GATC | 4 cut(s) | 454, 627, 736, 762 |
| Bst2UI | CCWGG | 2 cut(s) | 196, 233 |
| Bst6I | CTCTTC | 1 cut(s) | 14 |
| BstDEI | CTNAG | 4 cut(s) | 38, 164, 443, 542 |
| BstF5I | GGATG | 1 cut(s) | 588 |
| BstH2I | RGCGCY | 1 cut(s) | 829 |
| BstHHI | GCGC | 1 cut(s) | 828 |
| BstKTI | GATC | 4 cut(s) | 457, 630, 739, 765 |
| BstMAI | GTCTC | 4 cut(s) | 11, 41, 596, 814 |
| BstMBI | GATC | 4 cut(s) | 454, 627, 736, 762 |
| BstMCI | CGRYCG | 1 cut(s) | 452 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 134, 721 |
| BstNI | CCWGG | 2 cut(s) | 196, 233 |
| BstNSI | RCATGY | 1 cut(s) | 387 |
| BstSCI | CCNGG | 3 cut(s) | 194, 206, 231 |
| BstV1I | GCAGC | 1 cut(s) | 188 |
| Bsu15I | ATCGAT | 1 cut(s) | 280 |
| BsuRI | GGCC | 4 cut(s) | 252, 350, 493, 611 |
| BsuTUI | ATCGAT | 1 cut(s) | 280 |
| BtsCI | GGATG | 1 cut(s) | 588 |
| BtsI | GCAGTG | 1 cut(s) | 457 |
| BtsIMutI | CAGTG | 3 cut(s) | 404, 457, 845 |
| CfoI | GCGC | 1 cut(s) | 828 |
| Cfr10I | RCCGGY | 1 cut(s) | 110 |
| Cfr13I | GGNCC | 4 cut(s) | 251, 348, 610, 669 |
| ClaI | ATCGAT | 1 cut(s) | 280 |
| CseI | GACGC | 1 cut(s) | 525 |
| Csp6I | GTAC | 2 cut(s) | 32, 412 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 229, 264 |
| CviAII | CATG | 4 cut(s) | 345, 384, 548, 662 |
| CviQI | GTAC | 2 cut(s) | 32, 412 |
| DdeI | CTNAG | 4 cut(s) | 38, 164, 443, 542 |
| DpnI | GATC | 4 cut(s) | 456, 629, 738, 764 |
| DpnII | GATC | 4 cut(s) | 454, 627, 736, 762 |
| DraIII | CACNNNGTG | 1 cut(s) | 263 |
| Eam1104I | CTCTTC | 1 cut(s) | 14 |
| EarI | CTCTTC | 1 cut(s) | 14 |
| Eco31I | GGTCTC | 1 cut(s) | 11 |
| Eco47I | GGWCC | 1 cut(s) | 669 |
| Eco47III | AGCGCT | 1 cut(s) | 827 |
| EcoO109I | RGGNCCY | 1 cut(s) | 669 |
| EcoRII | CCWGG | 2 cut(s) | 194, 231 |
| Esp3I | CGTCTC | 1 cut(s) | 41 |
| FaeI | CATG | 4 cut(s) | 348, 387, 551, 665 |
| FaqI | GGGAC | 2 cut(s) | 224, 682 |
| FatI | CATG | 4 cut(s) | 344, 383, 547, 661 |
| FauI | CCCGC | 1 cut(s) | 551 |
| FbaI | TGATCA | 1 cut(s) | 736 |
| Fnu4HI | GCNGC | 1 cut(s) | 177 |
| FokI | GGATG | 1 cut(s) | 595 |
| Fsp4HI | GCNGC | 1 cut(s) | 177 |
| FspBI | CTAG | 3 cut(s) | 173, 374, 701 |
| GlaI | GCGC | 1 cut(s) | 827 |
| GluI | GCNGC | 1 cut(s) | 177 |
| GsuI | CTGGAG | 4 cut(s) | 34, 480, 737, 758 |
| HaeII | RGCGCY | 1 cut(s) | 829 |
| HaeIII | GGCC | 4 cut(s) | 252, 350, 493, 611 |
| HapII | CCGG | 3 cut(s) | 111, 207, 639 |
| HgaI | GACGC | 1 cut(s) | 525 |
| HhaI | GCGC | 1 cut(s) | 828 |
| Hin1II | CATG | 4 cut(s) | 348, 387, 551, 665 |
| Hin6I | GCGC | 1 cut(s) | 826 |
| HinP1I | GCGC | 1 cut(s) | 826 |
| HinfI | GANTC | 6 cut(s) | 157, 277, 282, 357, 544, 783 |
| HpaII | CCGG | 3 cut(s) | 111, 207, 639 |
| HphI | GGTGA | 3 cut(s) | 100, 352, 731 |
| Hpy166II | GTNNAC | 1 cut(s) | 268 |
| Hpy188I | TCNGA | 5 cut(s) | 91, 144, 167, 390, 454 |
| Hpy188III | TCNNGA | 9 cut(s) | 13, 40, 336, 485, 497, 513, 571, 766, 848 |
| Hpy8I | GTNNAC | 1 cut(s) | 268 |
| Hpy99I | CGWCG | 1 cut(s) | 519 |
| HpyAV | CCTTC | 4 cut(s) | 86, 519, 659, 682 |
| HpyCH4IV | ACGT | 1 cut(s) | 34 |
| HpyCH4V | TGCA | 4 cut(s) | 68, 257, 551, 730 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 134, 721 |
| HpyF3I | CTNAG | 4 cut(s) | 38, 164, 443, 542 |
| HpySE526I | ACGT | 1 cut(s) | 34 |
| Hsp92II | CATG | 4 cut(s) | 348, 387, 551, 665 |
| HspAI | GCGC | 1 cut(s) | 826 |
| Ksp22I | TGATCA | 1 cut(s) | 736 |
| Kzo9I | GATC | 4 cut(s) | 454, 627, 736, 762 |
| LmnI | GCTCC | 2 cut(s) | 641, 833 |
| Lsp1109I | GCAGC | 1 cut(s) | 188 |
| LweI | GCATC | 1 cut(s) | 55 |
| MaeI | CTAG | 3 cut(s) | 173, 374, 701 |
| MaeII | ACGT | 1 cut(s) | 34 |
| MaeIII | GTNAC | 1 cut(s) | 44 |
| MalI | GATC | 4 cut(s) | 456, 629, 738, 764 |
| MboI | GATC | 4 cut(s) | 454, 627, 736, 762 |
| MboII | GAAGA | 1 cut(s) | 182 |
| MhlI | GDGCHC | 1 cut(s) | 432 |
| MluCI | AATT | 2 cut(s) | 407, 791 |
| MlyI | GAGTC | 2 cut(s) | 553, 777 |
| MmeI | TCCRAC | 3 cut(s) | 432, 560, 700 |
| MroXI | GAANNNNTTC | 1 cut(s) | 281 |
| MseI | TTAA | 5 cut(s) | 311, 467, 480, 654, 690 |
| MslI | CAYNNNNRTG | 2 cut(s) | 63, 756 |
| MspI | CCGG | 3 cut(s) | 111, 207, 639 |
| MspR9I | CCNGG | 3 cut(s) | 196, 208, 233 |
| MvaI | CCWGG | 2 cut(s) | 196, 233 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 134, 721 |
| NciI | CCSGG | 1 cut(s) | 208 |
| NdeII | GATC | 4 cut(s) | 454, 627, 736, 762 |
| NlaIII | CATG | 4 cut(s) | 348, 387, 551, 665 |
| NlaIV | GGNNCC | 3 cut(s) | 643, 670, 770 |
| NspI | RCATGY | 1 cut(s) | 387 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 511, 520 |
| PdmI | GAANNNNTTC | 1 cut(s) | 281 |
| PfeI | GAWTC | 4 cut(s) | 157, 277, 282, 357 |
| PkrI | GCNGC | 1 cut(s) | 178 |
| PleI | GAGTC | 2 cut(s) | 552, 777 |
| PpsI | GAGTC | 2 cut(s) | 552, 777 |
| PpuMI | RGGWCCY | 1 cut(s) | 669 |
| Psp5II | RGGWCCY | 1 cut(s) | 669 |
| Psp6I | CCWGG | 2 cut(s) | 194, 231 |
| PspGI | CCWGG | 2 cut(s) | 194, 231 |
| PspN4I | GGNNCC | 3 cut(s) | 643, 670, 770 |
| PspPI | GGNCC | 4 cut(s) | 251, 348, 610, 669 |
| PspPPI | RGGWCCY | 1 cut(s) | 669 |
| RsaI | GTAC | 2 cut(s) | 33, 413 |
| RsaNI | GTAC | 2 cut(s) | 32, 412 |
| RseI | CAYNNNNRTG | 2 cut(s) | 63, 756 |
| SaqAI | TTAA | 5 cut(s) | 311, 467, 480, 654, 690 |
| SatI | GCNGC | 1 cut(s) | 177 |
| Sau3AI | GATC | 4 cut(s) | 454, 627, 736, 762 |
| Sau96I | GGNCC | 4 cut(s) | 251, 348, 610, 669 |
| SchI | GAGTC | 2 cut(s) | 553, 777 |
| ScrFI | CCNGG | 3 cut(s) | 196, 208, 233 |
| SduI | GDGCHC | 1 cut(s) | 432 |
| SfaNI | GCATC | 1 cut(s) | 55 |
| SinI | GGWCC | 1 cut(s) | 669 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 63, 756 |
| Sse9I | AATT | 2 cut(s) | 407, 791 |
| SsiI | CCGC | 1 cut(s) | 558 |
| SspMI | CTAG | 3 cut(s) | 173, 374, 701 |
| StyD4I | CCNGG | 3 cut(s) | 194, 206, 231 |
| TaiI | ACGT | 1 cut(s) | 37 |
| TaqI | TCGA | 5 cut(s) | 50, 280, 337, 514, 800 |
| TaqII | GACCGA | 1 cut(s) | 438 |
| TasI | AATT | 2 cut(s) | 407, 791 |
| TfiI | GAWTC | 4 cut(s) | 157, 277, 282, 357 |
| Tru1I | TTAA | 5 cut(s) | 311, 467, 480, 654, 690 |
| Tru9I | TTAA | 5 cut(s) | 311, 467, 480, 654, 690 |
| TscAI | CASTG | 3 cut(s) | 404, 464, 845 |
| TseI | GCWGC | 1 cut(s) | 176 |
| TspDTI | ATGAA | 6 cut(s) | 36, 176, 234, 290, 678, 804 |
| TspGWI | ACGGA | 3 cut(s) | 274, 275, 329 |
| TspRI | CASTG | 3 cut(s) | 404, 464, 845 |
| VpaK11BI | GGWCC | 1 cut(s) | 669 |
| XceI | RCATGY | 1 cut(s) | 387 |
| XmnI | GAANNNNTTC | 1 cut(s) | 281 |
| XspI | CTAG | 3 cut(s) | 173, 374, 701 |