ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 138 - 301 | 4.4e-08 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 852 |
| AciI | CCGC | 9 cut(s) | 176, 268, 287, 341, 947, 1031, 1044, 1133, 1214 |
| AclWI | GGATC | 2 cut(s) | 311, 661 |
| AcoI | YGGCCR | 2 cut(s) | 117, 704 |
| AcsI | RAATTY | 1 cut(s) | 103 |
| AdeI | CACNNNGTG | 1 cut(s) | 1004 |
| AfaI | GTAC | 1 cut(s) | 924 |
| AfeI | AGCGCT | 1 cut(s) | 980 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 208, 1155 |
| AflIII | ACRYGT | 3 cut(s) | 621, 1023, 1114 |
| AgsI | TTSAA | 2 cut(s) | 661, 758 |
| AhlI | ACTAGT | 1 cut(s) | 575 |
| AjiI | CACGTC | 1 cut(s) | 886 |
| AluBI | AGCT | 4 cut(s) | 710, 1056, 1063, 1084 |
| AluI | AGCT | 4 cut(s) | 710, 1056, 1063, 1084 |
| Alw26I | GTCTC | 2 cut(s) | 350, 577 |
| AlwI | GGATC | 2 cut(s) | 311, 661 |
| Ama87I | CYCGRG | 1 cut(s) | 861 |
| Aor51HI | AGCGCT | 1 cut(s) | 980 |
| AoxI | GGCC | 4 cut(s) | 117, 704, 1041, 1146 |
| ApeKI | GCWGC | 1 cut(s) | 604 |
| ApoI | RAATTY | 1 cut(s) | 103 |
| AspLEI | GCGC | 1 cut(s) | 981 |
| AspS9I | GGNCC | 1 cut(s) | 776 |
| AsuC2I | CCSGG | 1 cut(s) | 501 |
| AsuHPI | GGTGA | 2 cut(s) | 244, 665 |
| AvaI | CYCGRG | 1 cut(s) | 861 |
| AvaII | GGWCC | 1 cut(s) | 776 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 27, 59 |
| BbvCI | CCTCAGC | 1 cut(s) | 1064 |
| BbvI | GCAGC | 1 cut(s) | 591 |
| BccI | CCATC | 3 cut(s) | 5, 506, 909 |
| BceAI | ACGGC | 1 cut(s) | 719 |
| BcnI | CCSGG | 1 cut(s) | 501 |
| BcoDI | GTCTC | 2 cut(s) | 350, 577 |
| BcuI | ACTAGT | 1 cut(s) | 575 |
| BfaI | CTAG | 9 cut(s) | 24, 111, 180, 279, 299, 576, 840, 894, 1166 |
| BfmI | CTRYAG | 1 cut(s) | 309 |
| BfoI | RGCGCY | 1 cut(s) | 982 |
| BisI | GCNGC | 5 cut(s) | 177, 342, 605, 947, 1044 |
| BlsI | GCNGC | 5 cut(s) | 178, 343, 606, 948, 1045 |
| Bme1390I | CCNGG | 1 cut(s) | 501 |
| Bme18I | GGWCC | 1 cut(s) | 776 |
| BmeT110I | CYCGRG | 1 cut(s) | 861 |
| BmgBI | CACGTC | 1 cut(s) | 886 |
| BmgT120I | GGNCC | 1 cut(s) | 776 |
| BmiI | GGNNCC | 3 cut(s) | 213, 1137, 1160 |
| BmrFI | CCNGG | 1 cut(s) | 501 |
| BmsI | GCATC | 2 cut(s) | 139, 481 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1064 |
| BpuMI | CCSGG | 1 cut(s) | 501 |
| BsaJI | CCNNGG | 3 cut(s) | 120, 171, 860 |
| BsaWI | WCCGGW | 1 cut(s) | 262 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 347, 377 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 208, 1155 |
| Bse1I | ACTGG | 3 cut(s) | 215, 253, 1097 |
| BseDI | CCNNGG | 3 cut(s) | 120, 171, 860 |
| BseGI | GGATG | 4 cut(s) | 16, 229, 496, 1039 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 208, 1155 |
| BseMII | CTCAG | 4 cut(s) | 351, 1055, 1066, 1170 |
| BseNI | ACTGG | 3 cut(s) | 215, 253, 1097 |
| BseRI | GAGGAG | 5 cut(s) | 144, 249, 967, 1052, 1196 |
| BseXI | GCAGC | 1 cut(s) | 591 |
| BsgI | GTGCAG | 1 cut(s) | 1095 |
| BshFI | GGCC | 4 cut(s) | 119, 706, 1043, 1148 |
| BsiHKCI | CYCGRG | 1 cut(s) | 861 |
| BsiSI | CCGG | 2 cut(s) | 263, 500 |
| BslFI | GGGAC | 4 cut(s) | 529, 814, 1125, 1206 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 208, 1155 |
| BsmAI | GTCTC | 2 cut(s) | 350, 577 |
| BsmFI | GGGAC | 4 cut(s) | 529, 814, 1125, 1206 |
| BsnI | GGCC | 4 cut(s) | 119, 706, 1043, 1148 |
| BsoBI | CYCGRG | 1 cut(s) | 861 |
| Bsp143I | GATC | 3 cut(s) | 303, 666, 1048 |
| BspACI | CCGC | 9 cut(s) | 176, 268, 287, 341, 947, 1031, 1044, 1133, 1214 |
| BspANI | GGCC | 4 cut(s) | 119, 706, 1043, 1148 |
| BspCNI | CTCAG | 4 cut(s) | 352, 1056, 1065, 1171 |
| BspLI | GGNNCC | 3 cut(s) | 213, 1137, 1160 |
| BspMAI | CTGCAG | 1 cut(s) | 313 |
| BspPI | GGATC | 2 cut(s) | 311, 661 |
| BsrI | ACTGG | 3 cut(s) | 215, 253, 1097 |
| BssECI | CCNNGG | 3 cut(s) | 120, 171, 860 |
| BssMI | GATC | 3 cut(s) | 303, 666, 1048 |
| BssT1I | CCWWGG | 1 cut(s) | 171 |
| Bst4CI | ACNGT | 5 cut(s) | 520, 805, 850, 1002, 1158 |
| Bst6I | CTCTTC | 2 cut(s) | 22, 680 |
| BstC8I | GCNNGC | 4 cut(s) | 339, 708, 870, 1200 |
| BstDEI | CTNAG | 6 cut(s) | 360, 366, 1052, 1059, 1064, 1179 |
| BstEII | GGTNACC | 1 cut(s) | 563 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 206 |
| BstF5I | GGATG | 4 cut(s) | 16, 229, 496, 1039 |
| BstH2I | RGCGCY | 1 cut(s) | 982 |
| BstHHI | GCGC | 1 cut(s) | 981 |
| BstKTI | GATC | 3 cut(s) | 306, 669, 1051 |
| BstMAI | GTCTC | 2 cut(s) | 350, 577 |
| BstMBI | GATC | 3 cut(s) | 303, 666, 1048 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 347, 491, 865, 946 |
| BstNSI | RCATGY | 3 cut(s) | 625, 872, 1118 |
| BstPI | GGTNACC | 1 cut(s) | 563 |
| BstSCI | CCNGG | 1 cut(s) | 499 |
| BstSFI | CTRYAG | 1 cut(s) | 309 |
| BstV1I | GCAGC | 1 cut(s) | 591 |
| BstX2I | RGATCY | 2 cut(s) | 303, 666 |
| BstYI | RGATCY | 2 cut(s) | 303, 666 |
| BsuRI | GGCC | 4 cut(s) | 119, 706, 1043, 1148 |
| BtrI | CACGTC | 1 cut(s) | 886 |
| BtsCI | GGATG | 4 cut(s) | 16, 229, 496, 1039 |
| BtsIMutI | CAGTG | 3 cut(s) | 222, 487, 1007 |
| Cac8I | GCNNGC | 4 cut(s) | 339, 708, 870, 1200 |
| CfoI | GCGC | 1 cut(s) | 981 |
| Cfr13I | GGNCC | 1 cut(s) | 776 |
| Csp6I | GTAC | 1 cut(s) | 923 |
| CviAII | CATG | 4 cut(s) | 418, 622, 869, 1115 |
| CviQI | GTAC | 1 cut(s) | 923 |
| DdeI | CTNAG | 6 cut(s) | 360, 366, 1052, 1059, 1064, 1179 |
| DpnI | GATC | 3 cut(s) | 305, 668, 1050 |
| DpnII | GATC | 3 cut(s) | 303, 666, 1048 |
| DraIII | CACNNNGTG | 1 cut(s) | 1004 |
| EaeI | YGGCCR | 2 cut(s) | 117, 704 |
| Eam1104I | CTCTTC | 2 cut(s) | 22, 680 |
| EarI | CTCTTC | 2 cut(s) | 22, 680 |
| EciI | GGCGGA | 2 cut(s) | 302, 1046 |
| Eco130I | CCWWGG | 1 cut(s) | 171 |
| Eco147I | AGGCCT | 1 cut(s) | 1148 |
| Eco47I | GGWCC | 1 cut(s) | 776 |
| Eco47III | AGCGCT | 1 cut(s) | 980 |
| Eco88I | CYCGRG | 1 cut(s) | 861 |
| Eco91I | GGTNACC | 1 cut(s) | 563 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 206 |
| EcoO109I | RGGNCCY | 1 cut(s) | 776 |
| EcoO65I | GGTNACC | 1 cut(s) | 563 |
| EcoT14I | CCWWGG | 1 cut(s) | 171 |
| ErhI | CCWWGG | 1 cut(s) | 171 |
| FaeI | CATG | 4 cut(s) | 421, 625, 872, 1118 |
| FaiI | YATR | 8 cut(s) | 143, 419, 460, 561, 623, 786, 870, 1116 |
| FaqI | GGGAC | 4 cut(s) | 529, 814, 1125, 1206 |
| FatI | CATG | 4 cut(s) | 417, 621, 868, 1114 |
| FblI | GTMKAC | 1 cut(s) | 852 |
| Fnu4HI | GCNGC | 5 cut(s) | 177, 342, 605, 947, 1044 |
| FokI | GGATG | 4 cut(s) | 23, 236, 503, 1046 |
| Fsp4HI | GCNGC | 5 cut(s) | 177, 342, 605, 947, 1044 |
| FspBI | CTAG | 9 cut(s) | 24, 111, 180, 279, 299, 576, 840, 894, 1166 |
| GlaI | GCGC | 1 cut(s) | 980 |
| GluI | GCNGC | 5 cut(s) | 177, 342, 605, 947, 1044 |
| HaeII | RGCGCY | 1 cut(s) | 982 |
| HaeIII | GGCC | 4 cut(s) | 119, 706, 1043, 1148 |
| HapII | CCGG | 2 cut(s) | 263, 500 |
| HhaI | GCGC | 1 cut(s) | 981 |
| Hin1II | CATG | 4 cut(s) | 421, 625, 872, 1118 |
| Hin6I | GCGC | 1 cut(s) | 979 |
| HinP1I | GCGC | 1 cut(s) | 979 |
| HinfI | GANTC | 1 cut(s) | 362 |
| HpaII | CCGG | 2 cut(s) | 263, 500 |
| HphI | GGTGA | 2 cut(s) | 244, 665 |
| Hpy166II | GTNNAC | 8 cut(s) | 190, 473, 549, 742, 752, 771, 835, 853 |
| Hpy188I | TCNGA | 3 cut(s) | 159, 387, 1232 |
| Hpy188III | TCNNGA | 3 cut(s) | 423, 758, 1018 |
| Hpy8I | GTNNAC | 8 cut(s) | 190, 473, 549, 742, 752, 771, 835, 853 |
| Hpy99I | CGWCG | 1 cut(s) | 391 |
| HpyAV | CCTTC | 3 cut(s) | 29, 265, 457 |
| HpyCH4III | ACNGT | 5 cut(s) | 520, 805, 850, 1002, 1158 |
| HpyCH4IV | ACGT | 4 cut(s) | 394, 885, 921, 1023 |
| HpyCH4V | TGCA | 5 cut(s) | 311, 845, 868, 1076, 1202 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 347, 491, 865, 946 |
| HpyF3I | CTNAG | 6 cut(s) | 360, 366, 1052, 1059, 1064, 1179 |
| HpySE526I | ACGT | 4 cut(s) | 394, 885, 921, 1023 |
| Hsp92II | CATG | 4 cut(s) | 421, 625, 872, 1118 |
| HspAI | GCGC | 1 cut(s) | 979 |
| Kzo9I | GATC | 3 cut(s) | 303, 666, 1048 |
| LmnI | GCTCC | 3 cut(s) | 157, 262, 1135 |
| Lsp1109I | GCAGC | 1 cut(s) | 591 |
| LweI | GCATC | 2 cut(s) | 139, 481 |
| MaeI | CTAG | 9 cut(s) | 24, 111, 180, 279, 299, 576, 840, 894, 1166 |
| MaeII | ACGT | 4 cut(s) | 394, 885, 921, 1023 |
| MaeIII | GTNAC | 7 cut(s) | 136, 232, 563, 571, 624, 896, 956 |
| MalI | GATC | 3 cut(s) | 305, 668, 1050 |
| MboI | GATC | 3 cut(s) | 303, 666, 1048 |
| MboII | GAAGA | 6 cut(s) | 39, 112, 640, 697, 975, 1019 |
| MflI | RGATCY | 2 cut(s) | 303, 666 |
| MluCI | AATT | 5 cut(s) | 103, 164, 762, 912, 1128 |
| MlyI | GAGTC | 1 cut(s) | 371 |
| MmeI | TCCRAC | 4 cut(s) | 410, 468, 798, 913 |
| MseI | TTAA | 4 cut(s) | 315, 528, 1080, 1209 |
| MslI | CAYNNNNRTG | 1 cut(s) | 457 |
| MspA1I | CMGCKG | 1 cut(s) | 1046 |
| MspI | CCGG | 2 cut(s) | 263, 500 |
| MspR9I | CCNGG | 1 cut(s) | 501 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 347, 491, 865, 946 |
| NciI | CCSGG | 1 cut(s) | 501 |
| NdeII | GATC | 3 cut(s) | 303, 666, 1048 |
| NlaIII | CATG | 4 cut(s) | 421, 625, 872, 1118 |
| NlaIV | GGNNCC | 3 cut(s) | 213, 1137, 1160 |
| NmeAIII | GCCGAG | 1 cut(s) | 145 |
| NmuCI | GTSAC | 3 cut(s) | 136, 232, 896 |
| NspI | RCATGY | 3 cut(s) | 625, 872, 1118 |
| PaeI | GCATGC | 1 cut(s) | 872 |
| PceI | AGGCCT | 1 cut(s) | 1148 |
| PciI | ACATGT | 2 cut(s) | 621, 1114 |
| PflFI | GACNNNGTC | 1 cut(s) | 361 |
| PkrI | GCNGC | 5 cut(s) | 178, 343, 606, 948, 1045 |
| PleI | GAGTC | 1 cut(s) | 370 |
| PpsI | GAGTC | 1 cut(s) | 370 |
| PpuMI | RGGWCCY | 1 cut(s) | 776 |
| PscI | ACATGT | 2 cut(s) | 621, 1114 |
| Psp5II | RGGWCCY | 1 cut(s) | 776 |
| PspEI | GGTNACC | 1 cut(s) | 563 |
| PspN4I | GGNNCC | 3 cut(s) | 213, 1137, 1160 |
| PspPI | GGNCC | 1 cut(s) | 776 |
| PspPPI | RGGWCCY | 1 cut(s) | 776 |
| PstI | CTGCAG | 1 cut(s) | 313 |
| PsuI | RGATCY | 2 cut(s) | 303, 666 |
| PsyI | GACNNNGTC | 1 cut(s) | 361 |
| RsaI | GTAC | 1 cut(s) | 924 |
| RsaNI | GTAC | 1 cut(s) | 923 |
| RseI | CAYNNNNRTG | 1 cut(s) | 457 |
| SaqAI | TTAA | 4 cut(s) | 315, 528, 1080, 1209 |
| SatI | GCNGC | 5 cut(s) | 177, 342, 605, 947, 1044 |
| Sau3AI | GATC | 3 cut(s) | 303, 666, 1048 |
| Sau96I | GGNCC | 1 cut(s) | 776 |
| SchI | GAGTC | 1 cut(s) | 371 |
| ScrFI | CCNGG | 1 cut(s) | 501 |
| SfaNI | GCATC | 2 cut(s) | 139, 481 |
| SfcI | CTRYAG | 1 cut(s) | 309 |
| SinI | GGWCC | 1 cut(s) | 776 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 457 |
| SpeI | ACTAGT | 1 cut(s) | 575 |
| SphI | GCATGC | 1 cut(s) | 872 |
| Sse9I | AATT | 5 cut(s) | 103, 164, 762, 912, 1128 |
| SseBI | AGGCCT | 1 cut(s) | 1148 |
| SsiI | CCGC | 9 cut(s) | 176, 268, 287, 341, 947, 1031, 1044, 1133, 1214 |
| SspMI | CTAG | 9 cut(s) | 24, 111, 180, 279, 299, 576, 840, 894, 1166 |
| StuI | AGGCCT | 1 cut(s) | 1148 |
| StyD4I | CCNGG | 1 cut(s) | 499 |
| StyI | CCWWGG | 1 cut(s) | 171 |
| TaaI | ACNGT | 5 cut(s) | 520, 805, 850, 1002, 1158 |
| TaiI | ACGT | 4 cut(s) | 397, 888, 924, 1026 |
| TasI | AATT | 5 cut(s) | 103, 164, 762, 912, 1128 |
| TauI | GCSGC | 4 cut(s) | 179, 344, 949, 1046 |
| Tru1I | TTAA | 4 cut(s) | 315, 528, 1080, 1209 |
| Tru9I | TTAA | 4 cut(s) | 315, 528, 1080, 1209 |
| TscAI | CASTG | 3 cut(s) | 222, 487, 1007 |
| TseFI | GTSAC | 3 cut(s) | 136, 232, 896 |
| TseI | GCWGC | 1 cut(s) | 604 |
| Tsp45I | GTSAC | 3 cut(s) | 136, 232, 896 |
| TspDTI | ATGAA | 2 cut(s) | 240, 866 |
| TspRI | CASTG | 3 cut(s) | 222, 487, 1007 |
| Tth111I | GACNNNGTC | 1 cut(s) | 361 |
| VpaK11BI | GGWCC | 1 cut(s) | 776 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 206 |
| XapI | RAATTY | 1 cut(s) | 103 |
| XceI | RCATGY | 3 cut(s) | 625, 872, 1118 |
| XmiI | GTMKAC | 1 cut(s) | 852 |
| XspI | CTAG | 9 cut(s) | 24, 111, 180, 279, 299, 576, 840, 894, 1166 |