Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 366, 390 |
| AccII | CGCG | 1 cut(s) | 487 |
| AccIII | TCCGGA | 1 cut(s) | 375 |
| AciI | CCGC | 2 cut(s) | 385, 601 |
| AclWI | GGATC | 2 cut(s) | 38, 867 |
| AcoI | YGGCCR | 2 cut(s) | 334, 838 |
| AcyI | GRCGYC | 2 cut(s) | 219, 1018 |
| AdeI | CACNNNGTG | 1 cut(s) | 546 |
| AfaI | GTAC | 1 cut(s) | 559 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 856 |
| AflII | CTTAAG | 1 cut(s) | 142 |
| AgeI | ACCGGT | 1 cut(s) | 691 |
| AgsI | TTSAA | 1 cut(s) | 74 |
| AjnI | CCWGG | 3 cut(s) | 324, 776, 854 |
| AluBI | AGCT | 4 cut(s) | 527, 906, 970, 982 |
| AluI | AGCT | 4 cut(s) | 527, 906, 970, 982 |
| Alw26I | GTCTC | 4 cut(s) | 101, 323, 326, 697 |
| AlwI | GGATC | 2 cut(s) | 38, 867 |
| Aor13HI | TCCGGA | 1 cut(s) | 375 |
| AoxI | GGCC | 3 cut(s) | 334, 838, 957 |
| ApeKI | GCWGC | 5 cut(s) | 124, 127, 361, 524, 967 |
| AsiGI | ACCGGT | 1 cut(s) | 691 |
| AspS9I | GGNCC | 3 cut(s) | 281, 355, 652 |
| AsuC2I | CCSGG | 1 cut(s) | 406 |
| AvaII | GGWCC | 3 cut(s) | 281, 355, 652 |
| BalI | TGGCCA | 1 cut(s) | 840 |
| BauI | CACGAG | 2 cut(s) | 621, 953 |
| BbvI | GCAGC | 5 cut(s) | 136, 139, 348, 536, 979 |
| BccI | CCATC | 1 cut(s) | 233 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 626, 660 |
| BciT130I | CCWGG | 3 cut(s) | 326, 778, 856 |
| BclI | TGATCA | 1 cut(s) | 949 |
| BcnI | CCSGG | 1 cut(s) | 406 |
| BcoDI | GTCTC | 4 cut(s) | 101, 323, 326, 697 |
| BfaI | CTAG | 1 cut(s) | 642 |
| BfmI | CTRYAG | 1 cut(s) | 817 |
| BfrI | CTTAAG | 1 cut(s) | 142 |
| BfuAI | ACCTGC | 2 cut(s) | 366, 390 |
| BisI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| BlsI | GCNGC | 5 cut(s) | 126, 129, 363, 526, 969 |
| Bme1390I | CCNGG | 4 cut(s) | 326, 406, 778, 856 |
| Bme18I | GGWCC | 3 cut(s) | 281, 355, 652 |
| BmgT120I | GGNCC | 3 cut(s) | 281, 355, 652 |
| BmiI | GGNNCC | 3 cut(s) | 282, 356, 380 |
| BmrFI | CCNGG | 4 cut(s) | 326, 406, 778, 856 |
| BmsI | GCATC | 5 cut(s) | 256, 462, 569, 640, 886 |
| BpmI | CTGGAG | 3 cut(s) | 347, 549, 799 |
| Bpu10I | CCTNAGC | 1 cut(s) | 455 |
| BpuEI | CTTGAG | 1 cut(s) | 44 |
| BpuMI | CCSGG | 1 cut(s) | 406 |
| BsaHI | GRCGYC | 2 cut(s) | 219, 1018 |
| BsaI | GGTCTC | 2 cut(s) | 323, 326 |
| BsaJI | CCNNGG | 2 cut(s) | 405, 855 |
| BsaWI | WCCGGW | 3 cut(s) | 375, 554, 691 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 722, 752 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 856 |
| Bse118I | RCCGGY | 2 cut(s) | 332, 691 |
| BseAI | TCCGGA | 1 cut(s) | 375 |
| BseBI | CCWGG | 3 cut(s) | 326, 778, 856 |
| BseDI | CCNNGG | 2 cut(s) | 405, 855 |
| BseGI | GGATG | 1 cut(s) | 1009 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 856 |
| BseMII | CTCAG | 2 cut(s) | 115, 176 |
| BseRI | GAGGAG | 1 cut(s) | 743 |
| BseXI | GCAGC | 5 cut(s) | 136, 139, 348, 536, 979 |
| BsgI | GTGCAG | 3 cut(s) | 100, 213, 620 |
| Bsh1236I | CGCG | 1 cut(s) | 487 |
| Bsh1285I | CGRYCG | 1 cut(s) | 650 |
| BshFI | GGCC | 3 cut(s) | 336, 840, 959 |
| BshTI | ACCGGT | 1 cut(s) | 691 |
| BsiEI | CGRYCG | 1 cut(s) | 650 |
| BsiSI | CCGG | 5 cut(s) | 333, 376, 405, 555, 692 |
| BslFI | GGGAC | 5 cut(s) | 230, 368, 422, 480, 644 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 856 |
| BsmAI | GTCTC | 4 cut(s) | 101, 323, 326, 697 |
| BsmBI | CGTCTC | 1 cut(s) | 697 |
| BsmFI | GGGAC | 5 cut(s) | 230, 368, 422, 480, 644 |
| BsnI | GGCC | 3 cut(s) | 336, 840, 959 |
| Bso31I | GGTCTC | 2 cut(s) | 323, 326 |
| Bsp13I | TCCGGA | 1 cut(s) | 375 |
| Bsp143I | GATC | 4 cut(s) | 30, 250, 859, 949 |
| BspACI | CCGC | 2 cut(s) | 385, 601 |
| BspANI | GGCC | 3 cut(s) | 336, 840, 959 |
| BspCNI | CTCAG | 2 cut(s) | 114, 175 |
| BspEI | TCCGGA | 1 cut(s) | 375 |
| BspFNI | CGCG | 1 cut(s) | 487 |
| BspHI | TCATGA | 1 cut(s) | 745 |
| BspLI | GGNNCC | 3 cut(s) | 282, 356, 380 |
| BspMI | ACCTGC | 2 cut(s) | 366, 390 |
| BspPI | GGATC | 2 cut(s) | 38, 867 |
| BspTI | CTTAAG | 1 cut(s) | 142 |
| BspTNI | GGTCTC | 2 cut(s) | 323, 326 |
| BsrFI | RCCGGY | 2 cut(s) | 332, 691 |
| BssAI | RCCGGY | 2 cut(s) | 332, 691 |
| BssECI | CCNNGG | 2 cut(s) | 405, 855 |
| BssMI | GATC | 4 cut(s) | 30, 250, 859, 949 |
| BssNI | GRCGYC | 2 cut(s) | 219, 1018 |
| BssSI | CACGAG | 2 cut(s) | 621, 953 |
| Bst2BI | CACGAG | 2 cut(s) | 621, 953 |
| Bst2UI | CCWGG | 3 cut(s) | 326, 778, 856 |
| Bst4CI | ACNGT | 6 cut(s) | 23, 191, 232, 320, 868, 936 |
| BstACI | GRCGYC | 2 cut(s) | 219, 1018 |
| BstAFI | CTTAAG | 1 cut(s) | 142 |
| BstC8I | GCNNGC | 5 cut(s) | 452, 477, 489, 603, 785 |
| BstDEI | CTNAG | 5 cut(s) | 91, 101, 120, 162, 455 |
| BstF5I | GGATG | 1 cut(s) | 1009 |
| BstFNI | CGCG | 1 cut(s) | 487 |
| BstKTI | GATC | 4 cut(s) | 33, 253, 862, 952 |
| BstMAI | GTCTC | 4 cut(s) | 101, 323, 326, 697 |
| BstMBI | GATC | 4 cut(s) | 30, 250, 859, 949 |
| BstMCI | CGRYCG | 1 cut(s) | 650 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 136, 593, 602 |
| BstNI | CCWGG | 3 cut(s) | 326, 778, 856 |
| BstSCI | CCNGG | 4 cut(s) | 324, 404, 776, 854 |
| BstSFI | CTRYAG | 1 cut(s) | 817 |
| BstUI | CGCG | 1 cut(s) | 487 |
| BstV1I | GCAGC | 5 cut(s) | 136, 139, 348, 536, 979 |
| BsuRI | GGCC | 3 cut(s) | 336, 840, 959 |
| BtsCI | GGATG | 1 cut(s) | 1009 |
| BtsI | GCAGTG | 2 cut(s) | 112, 582 |
| BtsIMutI | CAGTG | 5 cut(s) | 112, 196, 582, 873, 945 |
| BveI | ACCTGC | 2 cut(s) | 366, 390 |
| Cac8I | GCNNGC | 5 cut(s) | 452, 477, 489, 603, 785 |
| CciI | TCATGA | 1 cut(s) | 745 |
| Cfr10I | RCCGGY | 2 cut(s) | 332, 691 |
| Cfr13I | GGNCC | 3 cut(s) | 281, 355, 652 |
| CseI | GACGC | 2 cut(s) | 227, 1007 |
| Csp6I | GTAC | 1 cut(s) | 558 |
| CspAI | ACCGGT | 1 cut(s) | 691 |
| CviAII | CATG | 3 cut(s) | 656, 698, 746 |
| CviQI | GTAC | 1 cut(s) | 558 |
| DdeI | CTNAG | 5 cut(s) | 91, 101, 120, 162, 455 |
| DpnI | GATC | 4 cut(s) | 32, 252, 861, 951 |
| DpnII | GATC | 4 cut(s) | 30, 250, 859, 949 |
| DraIII | CACNNNGTG | 1 cut(s) | 546 |
| EaeI | YGGCCR | 2 cut(s) | 334, 838 |
| Eco31I | GGTCTC | 2 cut(s) | 323, 326 |
| Eco47I | GGWCC | 3 cut(s) | 281, 355, 652 |
| EcoO109I | RGGNCCY | 1 cut(s) | 355 |
| EcoRII | CCWGG | 3 cut(s) | 324, 776, 854 |
| EcoT22I | ATGCAT | 1 cut(s) | 633 |
| Esp3I | CGTCTC | 1 cut(s) | 697 |
| FaeI | CATG | 3 cut(s) | 659, 701, 749 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 74, 106 |
| FaqI | GGGAC | 5 cut(s) | 230, 368, 422, 480, 644 |
| FatI | CATG | 3 cut(s) | 655, 697, 745 |
| FauI | CCCGC | 2 cut(s) | 378, 594 |
| FbaI | TGATCA | 1 cut(s) | 949 |
| Fnu4HI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| FokI | GGATG | 1 cut(s) | 1016 |
| Fsp4HI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| FspBI | CTAG | 1 cut(s) | 642 |
| GluI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| GsuI | CTGGAG | 3 cut(s) | 347, 549, 799 |
| HaeIII | GGCC | 3 cut(s) | 336, 840, 959 |
| HapII | CCGG | 5 cut(s) | 333, 376, 405, 555, 692 |
| HgaI | GACGC | 2 cut(s) | 227, 1007 |
| Hin1I | GRCGYC | 2 cut(s) | 219, 1018 |
| Hin1II | CATG | 3 cut(s) | 659, 701, 749 |
| HinfI | GANTC | 8 cut(s) | 70, 109, 134, 156, 460, 551, 773, 877 |
| HpaII | CCGG | 5 cut(s) | 333, 376, 405, 555, 692 |
| Hpy166II | GTNNAC | 1 cut(s) | 187 |
| Hpy188I | TCNGA | 3 cut(s) | 165, 242, 652 |
| Hpy188III | TCNNGA | 8 cut(s) | 34, 284, 376, 509, 621, 746, 874, 953 |
| Hpy8I | GTNNAC | 1 cut(s) | 187 |
| Hpy99I | CGWCG | 1 cut(s) | 711 |
| HpyAV | CCTTC | 4 cut(s) | 237, 271, 705, 743 |
| HpyCH4III | ACNGT | 6 cut(s) | 23, 191, 232, 320, 868, 936 |
| HpyCH4IV | ACGT | 1 cut(s) | 340 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 136, 593, 602 |
| HpyF3I | CTNAG | 5 cut(s) | 91, 101, 120, 162, 455 |
| HpySE526I | ACGT | 1 cut(s) | 340 |
| Hsp92I | GRCGYC | 2 cut(s) | 219, 1018 |
| Hsp92II | CATG | 3 cut(s) | 659, 701, 749 |
| Kpn2I | TCCGGA | 1 cut(s) | 375 |
| Ksp22I | TGATCA | 1 cut(s) | 949 |
| Kzo9I | GATC | 4 cut(s) | 30, 250, 859, 949 |
| LmnI | GCTCC | 1 cut(s) | 780 |
| Lsp1109I | GCAGC | 5 cut(s) | 136, 139, 348, 536, 979 |
| LweI | GCATC | 5 cut(s) | 256, 462, 569, 640, 886 |
| MaeI | CTAG | 1 cut(s) | 642 |
| MaeII | ACGT | 1 cut(s) | 340 |
| MaeIII | GTNAC | 1 cut(s) | 797 |
| MalI | GATC | 4 cut(s) | 32, 252, 861, 951 |
| MboI | GATC | 4 cut(s) | 30, 250, 859, 949 |
| MboII | GAAGA | 2 cut(s) | 524, 582 |
| MlsI | TGGCCA | 1 cut(s) | 840 |
| MluCI | AATT | 1 cut(s) | 825 |
| MluNI | TGGCCA | 1 cut(s) | 840 |
| MlyI | GAGTC | 4 cut(s) | 103, 150, 469, 767 |
| MmeI | TCCRAC | 4 cut(s) | 133, 552, 630, 651 |
| Mox20I | TGGCCA | 1 cut(s) | 840 |
| Mph1103I | ATGCAT | 1 cut(s) | 633 |
| MroI | TCCGGA | 1 cut(s) | 375 |
| MscI | TGGCCA | 1 cut(s) | 840 |
| MseI | TTAA | 3 cut(s) | 143, 414, 828 |
| Msp20I | TGGCCA | 1 cut(s) | 840 |
| MspA1I | CMGCKG | 1 cut(s) | 527 |
| MspCI | CTTAAG | 1 cut(s) | 142 |
| MspI | CCGG | 5 cut(s) | 333, 376, 405, 555, 692 |
| MspR9I | CCNGG | 4 cut(s) | 326, 406, 778, 856 |
| MvaI | CCWGG | 3 cut(s) | 326, 778, 856 |
| MvnI | CGCG | 1 cut(s) | 487 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 136, 593, 602 |
| NciI | CCSGG | 1 cut(s) | 406 |
| NdeII | GATC | 4 cut(s) | 30, 250, 859, 949 |
| NlaIII | CATG | 3 cut(s) | 659, 701, 749 |
| NlaIV | GGNNCC | 3 cut(s) | 282, 356, 380 |
| NmuCI | GTSAC | 1 cut(s) | 797 |
| NsiI | ATGCAT | 1 cut(s) | 633 |
| PagI | TCATGA | 1 cut(s) | 745 |
| PfeI | GAWTC | 4 cut(s) | 70, 134, 551, 877 |
| PflFI | GACNNNGTC | 1 cut(s) | 656 |
| PfoI | TCCNGGA | 2 cut(s) | 324, 776 |
| PinAI | ACCGGT | 1 cut(s) | 691 |
| PkrI | GCNGC | 5 cut(s) | 126, 129, 363, 526, 969 |
| PleI | GAGTC | 4 cut(s) | 103, 150, 468, 767 |
| PpsI | GAGTC | 4 cut(s) | 103, 150, 468, 767 |
| PpuMI | RGGWCCY | 1 cut(s) | 355 |
| Psp5II | RGGWCCY | 1 cut(s) | 355 |
| Psp6I | CCWGG | 3 cut(s) | 324, 776, 854 |
| PspGI | CCWGG | 3 cut(s) | 324, 776, 854 |
| PspN4I | GGNNCC | 3 cut(s) | 282, 356, 380 |
| PspPI | GGNCC | 3 cut(s) | 281, 355, 652 |
| PspPPI | RGGWCCY | 1 cut(s) | 355 |
| PsyI | GACNNNGTC | 1 cut(s) | 656 |
| PvuII | CAGCTG | 1 cut(s) | 527 |
| RsaI | GTAC | 1 cut(s) | 559 |
| RsaNI | GTAC | 1 cut(s) | 558 |
| SaqAI | TTAA | 3 cut(s) | 143, 414, 828 |
| SatI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| Sau3AI | GATC | 4 cut(s) | 30, 250, 859, 949 |
| Sau96I | GGNCC | 3 cut(s) | 281, 355, 652 |
| SchI | GAGTC | 4 cut(s) | 103, 150, 469, 767 |
| ScrFI | CCNGG | 4 cut(s) | 326, 406, 778, 856 |
| SfaNI | GCATC | 5 cut(s) | 256, 462, 569, 640, 886 |
| SfcI | CTRYAG | 1 cut(s) | 817 |
| SgrAI | CRCCGGYG | 1 cut(s) | 691 |
| SinI | GGWCC | 3 cut(s) | 281, 355, 652 |
| SmlI | CTYRAG | 2 cut(s) | 59, 142 |
| SmoI | CTYRAG | 2 cut(s) | 59, 142 |
| Sse9I | AATT | 1 cut(s) | 825 |
| SsiI | CCGC | 2 cut(s) | 385, 601 |
| SspMI | CTAG | 1 cut(s) | 642 |
| StyD4I | CCNGG | 4 cut(s) | 324, 404, 776, 854 |
| TaaI | ACNGT | 6 cut(s) | 23, 191, 232, 320, 868, 936 |
| TaiI | ACGT | 1 cut(s) | 343 |
| TaqI | TCGA | 3 cut(s) | 721, 862, 894 |
| TaqII | GACCGA | 1 cut(s) | 636 |
| TasI | AATT | 1 cut(s) | 825 |
| TfiI | GAWTC | 4 cut(s) | 70, 134, 551, 877 |
| Tru1I | TTAA | 3 cut(s) | 143, 414, 828 |
| Tru9I | TTAA | 3 cut(s) | 143, 414, 828 |
| TscAI | CASTG | 5 cut(s) | 119, 196, 589, 873, 952 |
| TseFI | GTSAC | 1 cut(s) | 797 |
| TseI | GCWGC | 5 cut(s) | 124, 127, 361, 524, 967 |
| Tsp45I | GTSAC | 1 cut(s) | 797 |
| TspDTI | ATGAA | 4 cut(s) | 17, 250, 762, 1020 |
| TspRI | CASTG | 5 cut(s) | 119, 196, 589, 873, 952 |
| Tth111I | GACNNNGTC | 1 cut(s) | 656 |
| Vha464I | CTTAAG | 1 cut(s) | 142 |
| VpaK11BI | GGWCC | 3 cut(s) | 281, 355, 652 |
| XspI | CTAG | 1 cut(s) | 642 |
| Zsp2I | ATGCAT | 1 cut(s) | 633 |