ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 174 |
| AccB1I | GGYRCC | 1 cut(s) | 305 |
| AclI | AACGTT | 1 cut(s) | 7 |
| AcoI | YGGCCR | 1 cut(s) | 334 |
| AcuI | CTGAAG | 1 cut(s) | 470 |
| AcyI | GRCGYC | 1 cut(s) | 171 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 403, 470 |
| AflIII | ACRYGT | 1 cut(s) | 364 |
| AgsI | TTSAA | 4 cut(s) | 13, 53, 355, 581 |
| AjnI | CCWGG | 1 cut(s) | 23 |
| AleI | CACNNNNGTG | 1 cut(s) | 540 |
| AluBI | AGCT | 4 cut(s) | 371, 596, 612, 644 |
| AluI | AGCT | 4 cut(s) | 371, 596, 612, 644 |
| Alw26I | GTCTC | 1 cut(s) | 227 |
| Ama87I | CYCGRG | 1 cut(s) | 538 |
| AoxI | GGCC | 1 cut(s) | 334 |
| AseI | ATTAAT | 1 cut(s) | 575 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 480 |
| AsuHPI | GGTGA | 1 cut(s) | 527 |
| AsuII | TTCGAA | 1 cut(s) | 250 |
| AvaI | CYCGRG | 1 cut(s) | 538 |
| BalI | TGGCCA | 1 cut(s) | 336 |
| BanI | GGYRCC | 1 cut(s) | 305 |
| BanII | GRGCYC | 1 cut(s) | 42 |
| BbsI | GAAGAC | 1 cut(s) | 166 |
| BccI | CCATC | 3 cut(s) | 191, 447, 525 |
| BciT130I | CCWGG | 1 cut(s) | 25 |
| BcoDI | GTCTC | 1 cut(s) | 227 |
| BfaI | CTAG | 4 cut(s) | 96, 122, 212, 649 |
| BfmI | CTRYAG | 2 cut(s) | 144, 340 |
| Bme1390I | CCNGG | 1 cut(s) | 25 |
| BmeT110I | CYCGRG | 1 cut(s) | 538 |
| BmiI | GGNNCC | 1 cut(s) | 307 |
| BmrFI | CCNGG | 1 cut(s) | 25 |
| BmsI | GCATC | 5 cut(s) | 52, 231, 253, 265, 607 |
| BpiI | GAAGAC | 1 cut(s) | 166 |
| Bpu10I | CCTNAGC | 1 cut(s) | 387 |
| Bpu14I | TTCGAA | 1 cut(s) | 250 |
| BsaHI | GRCGYC | 1 cut(s) | 171 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 403, 470 |
| BseBI | CCWGG | 1 cut(s) | 25 |
| BseGI | GGATG | 2 cut(s) | 67, 458 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 403, 470 |
| BseMII | CTCAG | 1 cut(s) | 312 |
| BshFI | GGCC | 1 cut(s) | 336 |
| BshNI | GGYRCC | 1 cut(s) | 305 |
| BsiHKCI | CYCGRG | 1 cut(s) | 538 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 403, 470 |
| BsmAI | GTCTC | 1 cut(s) | 227 |
| BsnI | GGCC | 1 cut(s) | 336 |
| BsoBI | CYCGRG | 1 cut(s) | 538 |
| Bsp119I | TTCGAA | 1 cut(s) | 250 |
| Bsp1286I | GDGCHC | 1 cut(s) | 42 |
| BspANI | GGCC | 1 cut(s) | 336 |
| BspCNI | CTCAG | 1 cut(s) | 311 |
| BspLI | GGNNCC | 1 cut(s) | 307 |
| BspMAI | CTGCAG | 1 cut(s) | 148 |
| BspQI | GCTCTTC | 1 cut(s) | 602 |
| BspT104I | TTCGAA | 1 cut(s) | 250 |
| BspT107I | GGYRCC | 1 cut(s) | 305 |
| BssNI | GRCGYC | 1 cut(s) | 171 |
| Bst2UI | CCWGG | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 1 cut(s) | 32 |
| Bst6I | CTCTTC | 1 cut(s) | 602 |
| BstACI | GRCGYC | 1 cut(s) | 171 |
| BstBI | TTCGAA | 1 cut(s) | 250 |
| BstDEI | CTNAG | 3 cut(s) | 298, 387, 504 |
| BstF5I | GGATG | 2 cut(s) | 67, 458 |
| BstMAI | GTCTC | 1 cut(s) | 227 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 342 |
| BstNI | CCWGG | 1 cut(s) | 25 |
| BstNSI | RCATGY | 1 cut(s) | 368 |
| BstSCI | CCNGG | 1 cut(s) | 23 |
| BstSFI | CTRYAG | 2 cut(s) | 144, 340 |
| BstV2I | GAAGAC | 1 cut(s) | 166 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 197 |
| BsuRI | GGCC | 1 cut(s) | 336 |
| BtsCI | GGATG | 2 cut(s) | 67, 458 |
| BtsI | GCAGTG | 1 cut(s) | 153 |
| BtsIMutI | CAGTG | 1 cut(s) | 153 |
| CseI | GACGC | 2 cut(s) | 71, 140 |
| CviAII | CATG | 2 cut(s) | 191, 365 |
| DdeI | CTNAG | 3 cut(s) | 298, 387, 504 |
| EaeI | YGGCCR | 1 cut(s) | 334 |
| Eam1104I | CTCTTC | 1 cut(s) | 602 |
| EarI | CTCTTC | 1 cut(s) | 602 |
| Eco24I | GRGCYC | 1 cut(s) | 42 |
| Eco57I | CTGAAG | 1 cut(s) | 470 |
| Eco88I | CYCGRG | 1 cut(s) | 538 |
| EcoRII | CCWGG | 1 cut(s) | 23 |
| EcoT22I | ATGCAT | 1 cut(s) | 246 |
| EcoT38I | GRGCYC | 1 cut(s) | 42 |
| FaeI | CATG | 2 cut(s) | 194, 368 |
| FaiI | YATR | 5 cut(s) | 192, 272, 330, 366, 434 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 596, 628 |
| FatI | CATG | 2 cut(s) | 190, 364 |
| FokI | GGATG | 2 cut(s) | 74, 465 |
| FriOI | GRGCYC | 1 cut(s) | 42 |
| FspBI | CTAG | 4 cut(s) | 96, 122, 212, 649 |
| HaeIII | GGCC | 1 cut(s) | 336 |
| HgaI | GACGC | 2 cut(s) | 71, 140 |
| Hin1I | GRCGYC | 1 cut(s) | 171 |
| Hin1II | CATG | 2 cut(s) | 194, 368 |
| HincII | GTYRAC | 3 cut(s) | 73, 86, 141 |
| HindII | GTYRAC | 3 cut(s) | 73, 86, 141 |
| HinfI | GANTC | 4 cut(s) | 235, 324, 393, 457 |
| HpaI | GTTAAC | 2 cut(s) | 73, 141 |
| HphI | GGTGA | 1 cut(s) | 527 |
| Hpy166II | GTNNAC | 3 cut(s) | 73, 86, 141 |
| Hpy188I | TCNGA | 7 cut(s) | 115, 240, 301, 398, 427, 530, 600 |
| Hpy188III | TCNNGA | 2 cut(s) | 131, 359 |
| Hpy8I | GTNNAC | 3 cut(s) | 73, 86, 141 |
| Hpy99I | CGWCG | 2 cut(s) | 156, 159 |
| HpyAV | CCTTC | 3 cut(s) | 296, 442, 489 |
| HpyCH4III | ACNGT | 1 cut(s) | 32 |
| HpyCH4IV | ACGT | 2 cut(s) | 7, 171 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 146, 244, 278, 418, 620 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 342 |
| HpyF3I | CTNAG | 3 cut(s) | 298, 387, 504 |
| HpySE526I | ACGT | 2 cut(s) | 7, 171 |
| Hsp92I | GRCGYC | 1 cut(s) | 171 |
| Hsp92II | CATG | 2 cut(s) | 194, 368 |
| KspAI | GTTAAC | 2 cut(s) | 73, 141 |
| LguI | GCTCTTC | 1 cut(s) | 602 |
| LpnPI | CCDG | 9 cut(s) | 10, 37, 44, 53, 306, 372, 456, 473, 498 |
| LweI | GCATC | 5 cut(s) | 52, 231, 253, 265, 607 |
| MaeI | CTAG | 4 cut(s) | 96, 122, 212, 649 |
| MaeII | ACGT | 2 cut(s) | 7, 171 |
| MboII | GAAGA | 6 cut(s) | 166, 169, 206, 239, 476, 619 |
| MhlI | GDGCHC | 1 cut(s) | 42 |
| MlsI | TGGCCA | 1 cut(s) | 336 |
| MluCI | AATT | 6 cut(s) | 48, 253, 347, 480, 572, 576 |
| MluNI | TGGCCA | 1 cut(s) | 336 |
| MlyI | GAGTC | 2 cut(s) | 229, 333 |
| MmeI | TCCRAC | 2 cut(s) | 472, 570 |
| MnlI | CCTC | 3 cut(s) | 119, 397, 625 |
| Mox20I | TGGCCA | 1 cut(s) | 336 |
| Mph1103I | ATGCAT | 1 cut(s) | 246 |
| MroXI | GAANNNNTTC | 1 cut(s) | 480 |
| MscI | TGGCCA | 1 cut(s) | 336 |
| MseI | TTAA | 5 cut(s) | 72, 140, 374, 564, 575 |
| MslI | CAYNNNNRTG | 3 cut(s) | 195, 273, 540 |
| Msp20I | TGGCCA | 1 cut(s) | 336 |
| MspR9I | CCNGG | 1 cut(s) | 25 |
| MvaI | CCWGG | 1 cut(s) | 25 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 342 |
| NlaIII | CATG | 2 cut(s) | 194, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 307 |
| NsiI | ATGCAT | 1 cut(s) | 246 |
| NspI | RCATGY | 1 cut(s) | 368 |
| NspV | TTCGAA | 1 cut(s) | 250 |
| OliI | CACNNNNGTG | 1 cut(s) | 540 |
| PciI | ACATGT | 1 cut(s) | 364 |
| PciSI | GCTCTTC | 1 cut(s) | 602 |
| PdmI | GAANNNNTTC | 1 cut(s) | 480 |
| PfeI | GAWTC | 2 cut(s) | 393, 457 |
| PleI | GAGTC | 2 cut(s) | 229, 332 |
| PpsI | GAGTC | 2 cut(s) | 229, 332 |
| PscI | ACATGT | 1 cut(s) | 364 |
| PshBI | ATTAAT | 1 cut(s) | 575 |
| Psp1406I | AACGTT | 1 cut(s) | 7 |
| Psp6I | CCWGG | 1 cut(s) | 23 |
| PspGI | CCWGG | 1 cut(s) | 23 |
| PspN4I | GGNNCC | 1 cut(s) | 307 |
| PstI | CTGCAG | 1 cut(s) | 148 |
| RseI | CAYNNNNRTG | 3 cut(s) | 195, 273, 540 |
| SapI | GCTCTTC | 1 cut(s) | 602 |
| SaqAI | TTAA | 5 cut(s) | 72, 140, 374, 564, 575 |
| SchI | GAGTC | 2 cut(s) | 229, 333 |
| ScrFI | CCNGG | 1 cut(s) | 25 |
| SduI | GDGCHC | 1 cut(s) | 42 |
| SfaNI | GCATC | 5 cut(s) | 52, 231, 253, 265, 607 |
| SfcI | CTRYAG | 2 cut(s) | 144, 340 |
| SfuI | TTCGAA | 1 cut(s) | 250 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 195, 273, 540 |
| Sse9I | AATT | 6 cut(s) | 48, 253, 347, 480, 572, 576 |
| SspI | AATATT | 1 cut(s) | 16 |
| SspMI | CTAG | 4 cut(s) | 96, 122, 212, 649 |
| StyD4I | CCNGG | 1 cut(s) | 23 |
| TaaI | ACNGT | 1 cut(s) | 32 |
| TaiI | ACGT | 2 cut(s) | 10, 174 |
| TaqI | TCGA | 2 cut(s) | 250, 630 |
| TasI | AATT | 6 cut(s) | 48, 253, 347, 480, 572, 576 |
| TfiI | GAWTC | 2 cut(s) | 393, 457 |
| Tru1I | TTAA | 5 cut(s) | 72, 140, 374, 564, 575 |
| Tru9I | TTAA | 5 cut(s) | 72, 140, 374, 564, 575 |
| TscAI | CASTG | 1 cut(s) | 153 |
| TspDTI | ATGAA | 2 cut(s) | 207, 584 |
| TspRI | CASTG | 1 cut(s) | 153 |
| VspI | ATTAAT | 1 cut(s) | 575 |
| XceI | RCATGY | 1 cut(s) | 368 |
| XmnI | GAANNNNTTC | 1 cut(s) | 480 |
| XspI | CTAG | 4 cut(s) | 96, 122, 212, 649 |
| ZraI | GACGTC | 1 cut(s) | 172 |
| Zsp2I | ATGCAT | 1 cut(s) | 246 |