ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 722 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 191 |
| AccII | CGCG | 1 cut(s) | 31 |
| AciI | CCGC | 1 cut(s) | 742 |
| AcoI | YGGCCR | 1 cut(s) | 448 |
| AcsI | RAATTY | 1 cut(s) | 692 |
| AcyI | GRCGYC | 1 cut(s) | 286 |
| AdeI | CACNNNGTG | 1 cut(s) | 493 |
| AfaI | GTAC | 2 cut(s) | 96, 838 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 104, 394 |
| AflIII | ACRYGT | 2 cut(s) | 29, 186 |
| AgsI | TTSAA | 5 cut(s) | 155, 334, 403, 775, 809 |
| AjiI | CACGTC | 1 cut(s) | 187 |
| AluBI | AGCT | 6 cut(s) | 294, 653, 752, 759, 766, 794 |
| AluI | AGCT | 6 cut(s) | 294, 653, 752, 759, 766, 794 |
| Alw26I | GTCTC | 1 cut(s) | 617 |
| Ama87I | CYCGRG | 1 cut(s) | 585 |
| AoxI | GGCC | 2 cut(s) | 448, 812 |
| ApeKI | GCWGC | 1 cut(s) | 759 |
| ApoI | RAATTY | 1 cut(s) | 692 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 560, 592 |
| AspLEI | GCGC | 2 cut(s) | 261, 502 |
| AspS9I | GGNCC | 1 cut(s) | 813 |
| AsuHPI | GGTGA | 3 cut(s) | 233, 338, 570 |
| AvaI | CYCGRG | 1 cut(s) | 585 |
| BbvI | GCAGC | 1 cut(s) | 746 |
| BccI | CCATC | 2 cut(s) | 43, 98 |
| BceAI | ACGGC | 1 cut(s) | 321 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 491, 525 |
| BclI | TGATCA | 1 cut(s) | 799 |
| BcoDI | GTCTC | 1 cut(s) | 617 |
| BfaI | CTAG | 2 cut(s) | 753, 913 |
| BfmI | CTRYAG | 1 cut(s) | 235 |
| BfoI | RGCGCY | 1 cut(s) | 262 |
| BisI | GCNGC | 1 cut(s) | 760 |
| BlsI | GCNGC | 1 cut(s) | 761 |
| BmeT110I | CYCGRG | 1 cut(s) | 585 |
| BmgBI | CACGTC | 1 cut(s) | 187 |
| BmgT120I | GGNCC | 1 cut(s) | 813 |
| BmiI | GGNNCC | 1 cut(s) | 309 |
| BmrI | ACTGGG | 1 cut(s) | 246 |
| BmsI | GCATC | 1 cut(s) | 822 |
| BmuI | ACTGGG | 1 cut(s) | 246 |
| Bpu10I | CCTNAGC | 1 cut(s) | 246 |
| BpuEI | CTTGAG | 2 cut(s) | 195, 647 |
| BsaAI | YACGTR | 1 cut(s) | 462 |
| BsaHI | GRCGYC | 1 cut(s) | 286 |
| BsaJI | CCNNGG | 1 cut(s) | 311 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 292, 322 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 104, 394 |
| Bse1I | ACTGG | 3 cut(s) | 232, 252, 783 |
| BseDI | CCNNGG | 1 cut(s) | 311 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 104, 394 |
| BseMII | CTCAG | 1 cut(s) | 915 |
| BseNI | ACTGG | 3 cut(s) | 232, 252, 783 |
| BseXI | GCAGC | 1 cut(s) | 746 |
| Bsh1236I | CGCG | 1 cut(s) | 31 |
| BshFI | GGCC | 2 cut(s) | 450, 814 |
| BsiHKCI | CYCGRG | 1 cut(s) | 585 |
| BsiSI | CCGG | 1 cut(s) | 283 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 104, 394 |
| BsmAI | GTCTC | 1 cut(s) | 617 |
| BsnI | GGCC | 2 cut(s) | 450, 814 |
| BsoBI | CYCGRG | 1 cut(s) | 585 |
| Bsp143I | GATC | 4 cut(s) | 12, 508, 799, 823 |
| BspACI | CCGC | 1 cut(s) | 742 |
| BspANI | GGCC | 2 cut(s) | 450, 814 |
| BspCNI | CTCAG | 1 cut(s) | 914 |
| BspFNI | CGCG | 1 cut(s) | 31 |
| BspLI | GGNNCC | 1 cut(s) | 309 |
| BsrI | ACTGG | 3 cut(s) | 232, 252, 783 |
| BssECI | CCNNGG | 1 cut(s) | 311 |
| BssMI | GATC | 4 cut(s) | 12, 508, 799, 823 |
| BssNI | GRCGYC | 1 cut(s) | 286 |
| Bst4CI | ACNGT | 1 cut(s) | 239 |
| Bst6I | CTCTTC | 2 cut(s) | 172, 353 |
| BstACI | GRCGYC | 1 cut(s) | 286 |
| BstBAI | YACGTR | 1 cut(s) | 462 |
| BstC8I | GCNNGC | 2 cut(s) | 498, 764 |
| BstDEI | CTNAG | 3 cut(s) | 246, 290, 901 |
| BstDSI | CCRYGG | 1 cut(s) | 311 |
| BstFNI | CGCG | 1 cut(s) | 31 |
| BstH2I | RGCGCY | 1 cut(s) | 262 |
| BstHHI | GCGC | 2 cut(s) | 261, 502 |
| BstKTI | GATC | 4 cut(s) | 15, 511, 802, 826 |
| BstMAI | GTCTC | 1 cut(s) | 617 |
| BstMBI | GATC | 4 cut(s) | 12, 508, 799, 823 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 256 |
| BstSFI | CTRYAG | 1 cut(s) | 235 |
| BstUI | CGCG | 1 cut(s) | 31 |
| BstV1I | GCAGC | 1 cut(s) | 746 |
| BsuRI | GGCC | 2 cut(s) | 450, 814 |
| BtgI | CCRYGG | 1 cut(s) | 311 |
| BtrI | CACGTC | 1 cut(s) | 187 |
| BtsIMutI | CAGTG | 1 cut(s) | 909 |
| Cac8I | GCNNGC | 2 cut(s) | 498, 764 |
| CfoI | GCGC | 2 cut(s) | 261, 502 |
| Cfr13I | GGNCC | 1 cut(s) | 813 |
| CseI | GACGC | 2 cut(s) | 275, 564 |
| Csp6I | GTAC | 2 cut(s) | 95, 837 |
| CviAII | CATG | 5 cut(s) | 270, 527, 643, 680, 784 |
| CviQI | GTAC | 2 cut(s) | 95, 837 |
| DdeI | CTNAG | 3 cut(s) | 246, 290, 901 |
| DpnI | GATC | 4 cut(s) | 14, 510, 801, 825 |
| DpnII | GATC | 4 cut(s) | 12, 508, 799, 823 |
| DraIII | CACNNNGTG | 1 cut(s) | 493 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 191 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 191 |
| EaeI | YGGCCR | 1 cut(s) | 448 |
| Eam1104I | CTCTTC | 2 cut(s) | 172, 353 |
| EarI | CTCTTC | 2 cut(s) | 172, 353 |
| Eco88I | CYCGRG | 1 cut(s) | 585 |
| EcoRI | GAATTC | 1 cut(s) | 692 |
| FaeI | CATG | 5 cut(s) | 273, 530, 646, 683, 787 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 489, 521 |
| FatI | CATG | 5 cut(s) | 269, 526, 642, 679, 783 |
| FauI | CCCGC | 1 cut(s) | 735 |
| FbaI | TGATCA | 1 cut(s) | 799 |
| Fnu4HI | GCNGC | 1 cut(s) | 760 |
| Fsp4HI | GCNGC | 1 cut(s) | 760 |
| FspBI | CTAG | 2 cut(s) | 753, 913 |
| GlaI | GCGC | 2 cut(s) | 260, 501 |
| GluI | GCNGC | 1 cut(s) | 760 |
| HaeII | RGCGCY | 1 cut(s) | 262 |
| HaeIII | GGCC | 2 cut(s) | 450, 814 |
| HapII | CCGG | 1 cut(s) | 283 |
| HgaI | GACGC | 2 cut(s) | 275, 564 |
| HhaI | GCGC | 2 cut(s) | 261, 502 |
| Hin1I | GRCGYC | 1 cut(s) | 286 |
| Hin1II | CATG | 5 cut(s) | 273, 530, 646, 683, 787 |
| Hin6I | GCGC | 2 cut(s) | 259, 500 |
| HinP1I | GCGC | 2 cut(s) | 259, 500 |
| HindIII | AAGCTT | 2 cut(s) | 764, 792 |
| HinfI | GANTC | 3 cut(s) | 43, 383, 660 |
| HpaII | CCGG | 1 cut(s) | 283 |
| HphI | GGTGA | 3 cut(s) | 233, 338, 570 |
| Hpy166II | GTNNAC | 2 cut(s) | 95, 465 |
| Hpy188I | TCNGA | 3 cut(s) | 48, 382, 567 |
| Hpy188III | TCNNGA | 5 cut(s) | 64, 532, 664, 697, 821 |
| Hpy8I | GTNNAC | 2 cut(s) | 95, 465 |
| HpyAV | CCTTC | 2 cut(s) | 661, 715 |
| HpyCH4III | ACNGT | 1 cut(s) | 239 |
| HpyCH4IV | ACGT | 2 cut(s) | 186, 461 |
| HpyCH4V | TGCA | 3 cut(s) | 423, 496, 762 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 256 |
| HpyF3I | CTNAG | 3 cut(s) | 246, 290, 901 |
| HpySE526I | ACGT | 2 cut(s) | 186, 461 |
| Hsp92I | GRCGYC | 1 cut(s) | 286 |
| Hsp92II | CATG | 5 cut(s) | 273, 530, 646, 683, 787 |
| HspAI | GCGC | 2 cut(s) | 259, 500 |
| Ksp22I | TGATCA | 1 cut(s) | 799 |
| Kzo9I | GATC | 4 cut(s) | 12, 508, 799, 823 |
| LmnI | GCTCC | 1 cut(s) | 313 |
| LpnPI | CCDG | 9 cut(s) | 18, 99, 213, 265, 296, 401, 710, 764, 788 |
| Lsp1109I | GCAGC | 1 cut(s) | 746 |
| LweI | GCATC | 1 cut(s) | 822 |
| MaeI | CTAG | 2 cut(s) | 753, 913 |
| MaeII | ACGT | 2 cut(s) | 186, 461 |
| MaeIII | GTNAC | 9 cut(s) | 61, 193, 223, 239, 326, 365, 576, 589, 906 |
| MalI | GATC | 4 cut(s) | 14, 510, 801, 825 |
| MboI | GATC | 4 cut(s) | 12, 508, 799, 823 |
| MboII | GAAGA | 5 cut(s) | 7, 159, 370, 490, 580 |
| MfeI | CAATTG | 1 cut(s) | 155 |
| MluCI | AATT | 8 cut(s) | 68, 155, 275, 552, 633, 692, 723, 865 |
| MluI | ACGCGT | 1 cut(s) | 29 |
| MlyI | GAGTC | 1 cut(s) | 654 |
| MnlI | CCTC | 6 cut(s) | 175, 217, 388, 506, 732, 904 |
| MseI | TTAA | 3 cut(s) | 146, 540, 551 |
| MspI | CCGG | 1 cut(s) | 283 |
| MunI | CAATTG | 1 cut(s) | 155 |
| MvnI | CGCG | 1 cut(s) | 31 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 256 |
| NdeII | GATC | 4 cut(s) | 12, 508, 799, 823 |
| NlaIII | CATG | 5 cut(s) | 273, 530, 646, 683, 787 |
| NlaIV | GGNNCC | 1 cut(s) | 309 |
| NmuCI | GTSAC | 6 cut(s) | 61, 193, 223, 239, 326, 576 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 832 |
| PfeI | GAWTC | 2 cut(s) | 43, 383 |
| PflFI | GACNNNGTC | 1 cut(s) | 443 |
| PkrI | GCNGC | 1 cut(s) | 761 |
| PleI | GAGTC | 1 cut(s) | 654 |
| PpsI | GAGTC | 1 cut(s) | 654 |
| Ppu21I | YACGTR | 1 cut(s) | 462 |
| PsiI | TTATAA | 1 cut(s) | 722 |
| PspN4I | GGNNCC | 1 cut(s) | 309 |
| PspPI | GGNCC | 1 cut(s) | 813 |
| PsyI | GACNNNGTC | 1 cut(s) | 443 |
| RsaI | GTAC | 2 cut(s) | 96, 838 |
| RsaNI | GTAC | 2 cut(s) | 95, 837 |
| SaqAI | TTAA | 3 cut(s) | 146, 540, 551 |
| SatI | GCNGC | 1 cut(s) | 760 |
| Sau3AI | GATC | 4 cut(s) | 12, 508, 799, 823 |
| Sau96I | GGNCC | 1 cut(s) | 813 |
| SchI | GAGTC | 1 cut(s) | 654 |
| SfaNI | GCATC | 1 cut(s) | 822 |
| SfcI | CTRYAG | 1 cut(s) | 235 |
| SmlI | CTYRAG | 2 cut(s) | 210, 662 |
| SmoI | CTYRAG | 2 cut(s) | 210, 662 |
| Sse9I | AATT | 8 cut(s) | 68, 155, 275, 552, 633, 692, 723, 865 |
| SsiI | CCGC | 1 cut(s) | 742 |
| SspI | AATATT | 1 cut(s) | 622 |
| SspMI | CTAG | 2 cut(s) | 753, 913 |
| TaaI | ACNGT | 1 cut(s) | 239 |
| TaiI | ACGT | 2 cut(s) | 189, 464 |
| TaqI | TCGA | 2 cut(s) | 174, 511 |
| TasI | AATT | 8 cut(s) | 68, 155, 275, 552, 633, 692, 723, 865 |
| TfiI | GAWTC | 2 cut(s) | 43, 383 |
| Tru1I | TTAA | 3 cut(s) | 146, 540, 551 |
| Tru9I | TTAA | 3 cut(s) | 146, 540, 551 |
| TscAI | CASTG | 1 cut(s) | 909 |
| TseFI | GTSAC | 6 cut(s) | 61, 193, 223, 239, 326, 576 |
| TseI | GCWGC | 1 cut(s) | 759 |
| Tsp45I | GTSAC | 6 cut(s) | 61, 193, 223, 239, 326, 576 |
| TspDTI | ATGAA | 3 cut(s) | 351, 498, 697 |
| TspGWI | ACGGA | 1 cut(s) | 300 |
| TspRI | CASTG | 1 cut(s) | 909 |
| Tth111I | GACNNNGTC | 1 cut(s) | 443 |
| XapI | RAATTY | 1 cut(s) | 692 |
| XspI | CTAG | 2 cut(s) | 753, 913 |