Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 356 |
| AccI | GTMKAC | 1 cut(s) | 1033 |
| AccII | CGCG | 1 cut(s) | 823 |
| AccIII | TCCGGA | 1 cut(s) | 1128 |
| AciI | CCGC | 6 cut(s) | 320, 752, 821, 823, 1295, 1573 |
| AclWI | GGATC | 4 cut(s) | 121, 636, 1108, 1408 |
| AcuI | CTGAAG | 1 cut(s) | 347 |
| AcvI | CACGTG | 1 cut(s) | 1667 |
| AfaI | GTAC | 4 cut(s) | 307, 644, 1056, 1481 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 824, 1321 |
| AflIII | ACRYGT | 2 cut(s) | 552, 1664 |
| AjiI | CACGTC | 2 cut(s) | 553, 1124 |
| AjnI | CCWGG | 3 cut(s) | 1241, 1320, 1412 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 484, 516 |
| AluBI | AGCT | 5 cut(s) | 218, 227, 325, 926, 1362 |
| AluI | AGCT | 5 cut(s) | 218, 227, 325, 926, 1362 |
| Alw26I | GTCTC | 4 cut(s) | 735, 1088, 1130, 1759 |
| AlwI | GGATC | 4 cut(s) | 121, 636, 1108, 1408 |
| Aor13HI | TCCGGA | 1 cut(s) | 1128 |
| AoxI | GGCC | 6 cut(s) | 254, 285, 935, 1416, 1559, 1677 |
| ApeKI | GCWGC | 3 cut(s) | 596, 754, 1265 |
| AseI | ATTAAT | 2 cut(s) | 840, 963 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1350, 1715 |
| AspS9I | GGNCC | 3 cut(s) | 749, 1416, 1678 |
| AsuHPI | GGTGA | 4 cut(s) | 468, 1056, 1268, 1420 |
| AvaII | GGWCC | 1 cut(s) | 749 |
| BaeGI | GKGCMC | 2 cut(s) | 914, 1572 |
| BbrPI | CACGTG | 1 cut(s) | 1667 |
| BbsI | GAAGAC | 3 cut(s) | 155, 835, 986 |
| BbvCI | CCTCAGC | 1 cut(s) | 975 |
| BbvI | GCAGC | 3 cut(s) | 608, 741, 1277 |
| BccI | CCATC | 9 cut(s) | 34, 178, 404, 478, 514, 842, 1043, 1584, 1669 |
| BceAI | ACGGC | 1 cut(s) | 1239 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1314, 1348 |
| BciT130I | CCWGG | 3 cut(s) | 1243, 1322, 1414 |
| BclI | TGATCA | 2 cut(s) | 1497, 1522 |
| BcoDI | GTCTC | 4 cut(s) | 735, 1088, 1130, 1759 |
| BfaI | CTAG | 2 cut(s) | 780, 1262 |
| BfuAI | ACCTGC | 1 cut(s) | 356 |
| BglII | AGATCT | 2 cut(s) | 986, 1012 |
| BisI | GCNGC | 3 cut(s) | 597, 755, 1266 |
| BlsI | GCNGC | 3 cut(s) | 598, 756, 1267 |
| Bme1390I | CCNGG | 3 cut(s) | 1243, 1322, 1414 |
| Bme18I | GGWCC | 1 cut(s) | 749 |
| BmgBI | CACGTC | 2 cut(s) | 553, 1124 |
| BmgT120I | GGNCC | 3 cut(s) | 749, 1416, 1678 |
| BmiI | GGNNCC | 1 cut(s) | 1247 |
| BmrFI | CCNGG | 3 cut(s) | 1243, 1322, 1414 |
| BmsI | GCATC | 2 cut(s) | 91, 1144 |
| BpiI | GAAGAC | 3 cut(s) | 155, 835, 986 |
| BpmI | CTGGAG | 2 cut(s) | 1123, 1548 |
| Bpu10I | CCTNAGC | 1 cut(s) | 975 |
| BpuEI | CTTGAG | 1 cut(s) | 628 |
| Bsa29I | ATCGAT | 1 cut(s) | 1152 |
| BsaAI | YACGTR | 2 cut(s) | 348, 1667 |
| BsaBI | GATNNNNATC | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 5 cut(s) | 440, 821, 1067, 1283, 1413 |
| BsaWI | WCCGGW | 1 cut(s) | 1128 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 879, 909, 1472, 1502 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 824, 1321 |
| Bse1I | ACTGG | 2 cut(s) | 1465, 1565 |
| Bse8I | GATNNNNATC | 1 cut(s) | 81 |
| BseAI | TCCGGA | 1 cut(s) | 1128 |
| BseBI | CCWGG | 3 cut(s) | 1243, 1322, 1414 |
| BseCI | ATCGAT | 1 cut(s) | 1152 |
| BseDI | CCNNGG | 5 cut(s) | 440, 821, 1067, 1283, 1413 |
| BseGI | GGATG | 4 cut(s) | 50, 189, 1576, 1656 |
| BseJI | GATNNNNATC | 1 cut(s) | 81 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 824, 1321 |
| BseMII | CTCAG | 5 cut(s) | 615, 966, 1152, 1525, 1735 |
| BseNI | ACTGG | 2 cut(s) | 1465, 1565 |
| BseSI | GKGCMC | 2 cut(s) | 914, 1572 |
| BseXI | GCAGC | 3 cut(s) | 608, 741, 1277 |
| BsgI | GTGCAG | 3 cut(s) | 38, 1003, 1104 |
| Bsh1236I | CGCG | 1 cut(s) | 823 |
| BshFI | GGCC | 6 cut(s) | 256, 287, 937, 1418, 1561, 1679 |
| BshVI | ATCGAT | 1 cut(s) | 1152 |
| BsiSI | CCGG | 1 cut(s) | 1129 |
| BslFI | GGGAC | 1 cut(s) | 1107 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 824, 1321 |
| BsmAI | GTCTC | 4 cut(s) | 735, 1088, 1130, 1759 |
| BsmBI | CGTCTC | 2 cut(s) | 735, 1130 |
| BsmFI | GGGAC | 1 cut(s) | 1107 |
| BsnI | GGCC | 6 cut(s) | 256, 287, 937, 1418, 1561, 1679 |
| Bsp1286I | GDGCHC | 2 cut(s) | 914, 1572 |
| Bsp13I | TCCGGA | 1 cut(s) | 1128 |
| Bsp143I | GATC | 9 cut(s) | 113, 628, 986, 1012, 1113, 1400, 1497, 1522, 1555 |
| BspACI | CCGC | 6 cut(s) | 320, 752, 821, 823, 1295, 1573 |
| BspANI | GGCC | 6 cut(s) | 256, 287, 937, 1418, 1561, 1679 |
| BspCNI | CTCAG | 5 cut(s) | 616, 967, 1151, 1524, 1734 |
| BspDI | ATCGAT | 1 cut(s) | 1152 |
| BspEI | TCCGGA | 1 cut(s) | 1128 |
| BspFNI | CGCG | 1 cut(s) | 823 |
| BspLI | GGNNCC | 1 cut(s) | 1247 |
| BspMI | ACCTGC | 1 cut(s) | 356 |
| BspPI | GGATC | 4 cut(s) | 121, 636, 1108, 1408 |
| BsrI | ACTGG | 2 cut(s) | 1465, 1565 |
| BssECI | CCNNGG | 5 cut(s) | 440, 821, 1067, 1283, 1413 |
| BssMI | GATC | 9 cut(s) | 113, 628, 986, 1012, 1113, 1400, 1497, 1522, 1555 |
| BssT1I | CCWWGG | 2 cut(s) | 1067, 1283 |
| Bst2UI | CCWGG | 3 cut(s) | 1243, 1322, 1414 |
| Bst4CI | ACNGT | 2 cut(s) | 1529, 1625 |
| Bst6I | CTCTTC | 4 cut(s) | 380, 573, 785, 1103 |
| BstBAI | YACGTR | 2 cut(s) | 348, 1667 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 948, 982 |
| BstDEI | CTNAG | 8 cut(s) | 223, 624, 740, 975, 1138, 1253, 1511, 1721 |
| BstDSI | CCRYGG | 2 cut(s) | 440, 821 |
| BstF5I | GGATG | 4 cut(s) | 50, 189, 1576, 1656 |
| BstFNI | CGCG | 1 cut(s) | 823 |
| BstKTI | GATC | 9 cut(s) | 116, 631, 989, 1015, 1116, 1403, 1500, 1525, 1558 |
| BstMAI | GTCTC | 4 cut(s) | 735, 1088, 1130, 1759 |
| BstMBI | GATC | 9 cut(s) | 113, 628, 986, 1012, 1113, 1400, 1497, 1522, 1555 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 224, 860, 943, 956, 1209, 1223, 1567, 1676 |
| BstNI | CCWGG | 3 cut(s) | 1243, 1322, 1414 |
| BstNSI | RCATGY | 1 cut(s) | 950 |
| BstSCI | CCNGG | 3 cut(s) | 1241, 1320, 1412 |
| BstSLI | GKGCMC | 2 cut(s) | 914, 1572 |
| BstUI | CGCG | 1 cut(s) | 823 |
| BstV1I | GCAGC | 3 cut(s) | 608, 741, 1277 |
| BstV2I | GAAGAC | 3 cut(s) | 155, 835, 986 |
| BstX2I | RGATCY | 5 cut(s) | 113, 986, 1012, 1113, 1400 |
| BstYI | RGATCY | 5 cut(s) | 113, 986, 1012, 1113, 1400 |
| Bsu15I | ATCGAT | 1 cut(s) | 1152 |
| BsuRI | GGCC | 6 cut(s) | 256, 287, 937, 1418, 1561, 1679 |
| BsuTUI | ATCGAT | 1 cut(s) | 1152 |
| BtgI | CCRYGG | 2 cut(s) | 440, 821 |
| BtrI | CACGTC | 2 cut(s) | 553, 1124 |
| BtsCI | GGATG | 4 cut(s) | 50, 189, 1576, 1656 |
| BtsIMutI | CAGTG | 3 cut(s) | 1472, 1525, 1572 |
| BveI | ACCTGC | 1 cut(s) | 356 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 948, 982 |
| Cfr13I | GGNCC | 3 cut(s) | 749, 1416, 1678 |
| Cfr42I | CCGCGG | 1 cut(s) | 824 |
| ClaI | ATCGAT | 1 cut(s) | 1152 |
| CseI | GACGC | 1 cut(s) | 1659 |
| Csp6I | GTAC | 4 cut(s) | 306, 643, 1055, 1480 |
| CviAII | CATG | 5 cut(s) | 147, 313, 947, 1616, 1730 |
| CviQI | GTAC | 4 cut(s) | 306, 643, 1055, 1480 |
| DdeI | CTNAG | 8 cut(s) | 223, 624, 740, 975, 1138, 1253, 1511, 1721 |
| DpnI | GATC | 9 cut(s) | 115, 630, 988, 1014, 1115, 1402, 1499, 1524, 1557 |
| DpnII | GATC | 9 cut(s) | 113, 628, 986, 1012, 1113, 1400, 1497, 1522, 1555 |
| DraI | TTTAAA | 1 cut(s) | 466 |
| Eam1104I | CTCTTC | 4 cut(s) | 380, 573, 785, 1103 |
| EarI | CTCTTC | 4 cut(s) | 380, 573, 785, 1103 |
| EciI | GGCGGA | 1 cut(s) | 335 |
| Eco130I | CCWWGG | 2 cut(s) | 1067, 1283 |
| Eco147I | AGGCCT | 1 cut(s) | 937 |
| Eco47I | GGWCC | 1 cut(s) | 749 |
| Eco57I | CTGAAG | 1 cut(s) | 347 |
| Eco72I | CACGTG | 1 cut(s) | 1667 |
| EcoRII | CCWGG | 3 cut(s) | 1241, 1320, 1412 |
| EcoT14I | CCWWGG | 2 cut(s) | 1067, 1283 |
| EcoT22I | ATGCAT | 2 cut(s) | 84, 204 |
| ErhI | CCWWGG | 2 cut(s) | 1067, 1283 |
| Esp3I | CGTCTC | 2 cut(s) | 735, 1130 |
| FaeI | CATG | 5 cut(s) | 150, 316, 950, 1619, 1733 |
| FaqI | GGGAC | 1 cut(s) | 1107 |
| FatI | CATG | 5 cut(s) | 146, 312, 946, 1615, 1729 |
| FauI | CCCGC | 3 cut(s) | 816, 1288, 1580 |
| FbaI | TGATCA | 2 cut(s) | 1497, 1522 |
| FblI | GTMKAC | 1 cut(s) | 1033 |
| Fnu4HI | GCNGC | 3 cut(s) | 597, 755, 1266 |
| FokI | GGATG | 4 cut(s) | 57, 196, 1563, 1663 |
| Fsp4HI | GCNGC | 3 cut(s) | 597, 755, 1266 |
| FspBI | CTAG | 2 cut(s) | 780, 1262 |
| GluI | GCNGC | 3 cut(s) | 597, 755, 1266 |
| GsuI | CTGGAG | 2 cut(s) | 1123, 1548 |
| HaeIII | GGCC | 6 cut(s) | 256, 287, 937, 1418, 1561, 1679 |
| HapII | CCGG | 1 cut(s) | 1129 |
| HgaI | GACGC | 1 cut(s) | 1659 |
| Hin1II | CATG | 5 cut(s) | 150, 316, 950, 1619, 1733 |
| HincII | GTYRAC | 1 cut(s) | 1034 |
| HindII | GTYRAC | 1 cut(s) | 1034 |
| HinfI | GANTC | 6 cut(s) | 247, 260, 524, 1095, 1351, 1612 |
| HpaII | CCGG | 1 cut(s) | 1129 |
| HphI | GGTGA | 4 cut(s) | 468, 1056, 1268, 1420 |
| Hpy166II | GTNNAC | 5 cut(s) | 818, 1034, 1055, 1064, 1276 |
| Hpy188I | TCNGA | 8 cut(s) | 118, 483, 529, 899, 1180, 1233, 1458, 1522 |
| Hpy188III | TCNNGA | 6 cut(s) | 194, 1102, 1129, 1404, 1553, 1639 |
| Hpy8I | GTNNAC | 5 cut(s) | 818, 1034, 1055, 1064, 1276 |
| Hpy99I | CGWCG | 3 cut(s) | 1035, 1587, 1675 |
| HpyAV | CCTTC | 5 cut(s) | 39, 277, 325, 482, 1727 |
| HpyCH4III | ACNGT | 2 cut(s) | 1529, 1625 |
| HpyCH4IV | ACGT | 7 cut(s) | 308, 347, 552, 728, 1123, 1632, 1666 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 224, 860, 943, 956, 1209, 1223, 1567, 1676 |
| HpyF3I | CTNAG | 8 cut(s) | 223, 624, 740, 975, 1138, 1253, 1511, 1721 |
| HpySE526I | ACGT | 7 cut(s) | 308, 347, 552, 728, 1123, 1632, 1666 |
| Hsp92II | CATG | 5 cut(s) | 150, 316, 950, 1619, 1733 |
| Kpn2I | TCCGGA | 1 cut(s) | 1128 |
| Ksp22I | TGATCA | 2 cut(s) | 1497, 1522 |
| KspI | CCGCGG | 1 cut(s) | 824 |
| Kzo9I | GATC | 9 cut(s) | 113, 628, 986, 1012, 1113, 1400, 1497, 1522, 1555 |
| LmnI | GCTCC | 2 cut(s) | 94, 322 |
| Lsp1109I | GCAGC | 3 cut(s) | 608, 741, 1277 |
| LweI | GCATC | 2 cut(s) | 91, 1144 |
| MaeI | CTAG | 2 cut(s) | 780, 1262 |
| MaeII | ACGT | 7 cut(s) | 308, 347, 552, 728, 1123, 1632, 1666 |
| MaeIII | GTNAC | 1 cut(s) | 689 |
| MalI | GATC | 9 cut(s) | 115, 630, 988, 1014, 1115, 1402, 1499, 1524, 1557 |
| MboI | GATC | 9 cut(s) | 113, 628, 986, 1012, 1113, 1400, 1497, 1522, 1555 |
| MflI | RGATCY | 5 cut(s) | 113, 986, 1012, 1113, 1400 |
| MhlI | GDGCHC | 2 cut(s) | 914, 1572 |
| MlyI | GAGTC | 2 cut(s) | 1089, 1621 |
| MmeI | TCCRAC | 2 cut(s) | 1628, 1768 |
| Mph1103I | ATGCAT | 2 cut(s) | 84, 204 |
| MroI | TCCGGA | 1 cut(s) | 1128 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1350, 1715 |
| MslI | CAYNNNNRTG | 2 cut(s) | 887, 1152 |
| MspA1I | CMGCKG | 2 cut(s) | 754, 823 |
| MspI | CCGG | 1 cut(s) | 1129 |
| MspR9I | CCNGG | 3 cut(s) | 1243, 1322, 1414 |
| MvaI | CCWGG | 3 cut(s) | 1243, 1322, 1414 |
| MvnI | CGCG | 1 cut(s) | 823 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 224, 860, 943, 956, 1209, 1223, 1567, 1676 |
| NdeII | GATC | 9 cut(s) | 113, 628, 986, 1012, 1113, 1400, 1497, 1522, 1555 |
| NlaIII | CATG | 5 cut(s) | 150, 316, 950, 1619, 1733 |
| NlaIV | GGNNCC | 1 cut(s) | 1247 |
| NmeAIII | GCCGAG | 1 cut(s) | 935 |
| NsiI | ATGCAT | 2 cut(s) | 84, 204 |
| NspI | RCATGY | 1 cut(s) | 950 |
| PaeI | GCATGC | 1 cut(s) | 950 |
| PceI | AGGCCT | 1 cut(s) | 937 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1350, 1715 |
| PfeI | GAWTC | 4 cut(s) | 247, 260, 524, 1351 |
| PkrI | GCNGC | 3 cut(s) | 598, 756, 1267 |
| PleI | GAGTC | 2 cut(s) | 1089, 1620 |
| PmaCI | CACGTG | 1 cut(s) | 1667 |
| PmlI | CACGTG | 1 cut(s) | 1667 |
| PpsI | GAGTC | 2 cut(s) | 1089, 1620 |
| Ppu21I | YACGTR | 2 cut(s) | 348, 1667 |
| PshBI | ATTAAT | 2 cut(s) | 840, 963 |
| Psp6I | CCWGG | 3 cut(s) | 1241, 1320, 1412 |
| PspCI | CACGTG | 1 cut(s) | 1667 |
| PspGI | CCWGG | 3 cut(s) | 1241, 1320, 1412 |
| PspN4I | GGNNCC | 1 cut(s) | 1247 |
| PspPI | GGNCC | 3 cut(s) | 749, 1416, 1678 |
| PsuI | RGATCY | 5 cut(s) | 113, 986, 1012, 1113, 1400 |
| RsaI | GTAC | 4 cut(s) | 307, 644, 1056, 1481 |
| RsaNI | GTAC | 4 cut(s) | 306, 643, 1055, 1480 |
| RseI | CAYNNNNRTG | 2 cut(s) | 887, 1152 |
| SacII | CCGCGG | 1 cut(s) | 824 |
| SalI | GTCGAC | 1 cut(s) | 1032 |
| SatI | GCNGC | 3 cut(s) | 597, 755, 1266 |
| Sau3AI | GATC | 9 cut(s) | 113, 628, 986, 1012, 1113, 1400, 1497, 1522, 1555 |
| Sau96I | GGNCC | 3 cut(s) | 749, 1416, 1678 |
| SchI | GAGTC | 2 cut(s) | 1089, 1621 |
| ScrFI | CCNGG | 3 cut(s) | 1243, 1322, 1414 |
| SduI | GDGCHC | 2 cut(s) | 914, 1572 |
| SfaNI | GCATC | 2 cut(s) | 91, 1144 |
| Sfr303I | CCGCGG | 1 cut(s) | 824 |
| SgrBI | CCGCGG | 1 cut(s) | 824 |
| SinI | GGWCC | 1 cut(s) | 749 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 887, 1152 |
| SmlI | CTYRAG | 1 cut(s) | 607 |
| SmoI | CTYRAG | 1 cut(s) | 607 |
| SphI | GCATGC | 1 cut(s) | 950 |
| SseBI | AGGCCT | 1 cut(s) | 937 |
| SsiI | CCGC | 6 cut(s) | 320, 752, 821, 823, 1295, 1573 |
| SspI | AATATT | 1 cut(s) | 844 |
| SspMI | CTAG | 2 cut(s) | 780, 1262 |
| StuI | AGGCCT | 1 cut(s) | 937 |
| StyD4I | CCNGG | 3 cut(s) | 1241, 1320, 1412 |
| StyI | CCWWGG | 2 cut(s) | 1067, 1283 |
| TaaI | ACNGT | 2 cut(s) | 1529, 1625 |
| TaiI | ACGT | 7 cut(s) | 311, 350, 555, 731, 1126, 1635, 1669 |
| TaqI | TCGA | 7 cut(s) | 193, 394, 631, 1033, 1152, 1405, 1673 |
| TaqII | GACCGA | 1 cut(s) | 1076 |
| TatI | WGTACW | 1 cut(s) | 1054 |
| TfiI | GAWTC | 4 cut(s) | 247, 260, 524, 1351 |
| TscAI | CASTG | 3 cut(s) | 1472, 1532, 1572 |
| TseI | GCWGC | 3 cut(s) | 596, 754, 1265 |
| TspDTI | ATGAA | 7 cut(s) | 135, 301, 591, 605, 1323, 1359, 1746 |
| TspGWI | ACGGA | 2 cut(s) | 509, 1344 |
| TspRI | CASTG | 3 cut(s) | 1472, 1532, 1572 |
| VpaK11BI | GGWCC | 1 cut(s) | 749 |
| VspI | ATTAAT | 2 cut(s) | 840, 963 |
| XceI | RCATGY | 1 cut(s) | 950 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 407 |
| XmiI | GTMKAC | 1 cut(s) | 1033 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1350, 1715 |
| XspI | CTAG | 2 cut(s) | 780, 1262 |
| Zsp2I | ATGCAT | 2 cut(s) | 84, 204 |