ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 520 |
| AciI | CCGC | 1 cut(s) | 549 |
| AclWI | GGATC | 2 cut(s) | 111, 141 |
| AcsI | RAATTY | 1 cut(s) | 241 |
| AcuI | CTGAAG | 1 cut(s) | 162 |
| AfaI | GTAC | 2 cut(s) | 278, 649 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 230 |
| AgsI | TTSAA | 4 cut(s) | 260, 560, 614, 763 |
| AjnI | CCWGG | 1 cut(s) | 580 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 83, 115 |
| AluBI | AGCT | 4 cut(s) | 20, 230, 766, 815 |
| AluI | AGCT | 4 cut(s) | 20, 230, 766, 815 |
| Alw21I | GWGCWC | 2 cut(s) | 483, 629 |
| Alw44I | GTGCAC | 1 cut(s) | 479 |
| AlwI | GGATC | 2 cut(s) | 111, 141 |
| ApaLI | GTGCAC | 1 cut(s) | 479 |
| ApoI | RAATTY | 1 cut(s) | 241 |
| AspS9I | GGNCC | 4 cut(s) | 331, 584, 635, 801 |
| AsuC2I | CCSGG | 1 cut(s) | 669 |
| AvaII | GGWCC | 4 cut(s) | 331, 584, 635, 801 |
| BaeGI | GKGCMC | 1 cut(s) | 483 |
| BanI | GGYRCC | 1 cut(s) | 520 |
| Bbv12I | GWGCWC | 2 cut(s) | 483, 629 |
| BccI | CCATC | 6 cut(s) | 19, 320, 511, 666, 740, 823 |
| BciT130I | CCWGG | 1 cut(s) | 582 |
| BcnI | CCSGG | 1 cut(s) | 669 |
| BfaI | CTAG | 1 cut(s) | 695 |
| Bme1390I | CCNGG | 2 cut(s) | 582, 669 |
| Bme18I | GGWCC | 4 cut(s) | 331, 584, 635, 801 |
| BmgT120I | GGNCC | 4 cut(s) | 331, 584, 635, 801 |
| BmiI | GGNNCC | 3 cut(s) | 332, 333, 522 |
| BmrFI | CCNGG | 2 cut(s) | 582, 669 |
| BmsI | GCATC | 1 cut(s) | 574 |
| BpuEI | CTTGAG | 1 cut(s) | 210 |
| BpuMI | CCSGG | 1 cut(s) | 669 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 230 |
| Bse3DI | GCAATG | 1 cut(s) | 279 |
| BseBI | CCWGG | 1 cut(s) | 582 |
| BseGI | GGATG | 2 cut(s) | 565, 677 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 230 |
| BseMI | GCAATG | 1 cut(s) | 279 |
| BseSI | GKGCMC | 1 cut(s) | 483 |
| BsgI | GTGCAG | 1 cut(s) | 320 |
| BshNI | GGYRCC | 1 cut(s) | 520 |
| BsiHKAI | GWGCWC | 2 cut(s) | 483, 629 |
| BsiSI | CCGG | 1 cut(s) | 668 |
| BslFI | GGGAC | 2 cut(s) | 344, 583 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 230 |
| BsmFI | GGGAC | 2 cut(s) | 344, 583 |
| Bsp1286I | GDGCHC | 2 cut(s) | 483, 629 |
| Bsp1407I | TGTACA | 1 cut(s) | 647 |
| Bsp143I | GATC | 3 cut(s) | 103, 133, 181 |
| BspACI | CCGC | 1 cut(s) | 549 |
| BspLI | GGNNCC | 3 cut(s) | 332, 333, 522 |
| BspPI | GGATC | 2 cut(s) | 111, 141 |
| BspT107I | GGYRCC | 1 cut(s) | 520 |
| BsrDI | GCAATG | 1 cut(s) | 279 |
| BsrGI | TGTACA | 1 cut(s) | 647 |
| BssMI | GATC | 3 cut(s) | 103, 133, 181 |
| Bst2UI | CCWGG | 1 cut(s) | 582 |
| Bst4CI | ACNGT | 5 cut(s) | 121, 188, 264, 478, 631 |
| Bst6I | CTCTTC | 1 cut(s) | 730 |
| BstAUI | TGTACA | 1 cut(s) | 647 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 232, 353 |
| BstF5I | GGATG | 2 cut(s) | 565, 677 |
| BstKTI | GATC | 3 cut(s) | 106, 136, 184 |
| BstMBI | GATC | 3 cut(s) | 103, 133, 181 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 348 |
| BstNI | CCWGG | 1 cut(s) | 582 |
| BstNSI | RCATGY | 1 cut(s) | 598 |
| BstSCI | CCNGG | 2 cut(s) | 580, 667 |
| BstSLI | GKGCMC | 1 cut(s) | 483 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BtsCI | GGATG | 2 cut(s) | 565, 677 |
| BtsIMutI | CAGTG | 1 cut(s) | 126 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 232, 353 |
| Cfr13I | GGNCC | 4 cut(s) | 331, 584, 635, 801 |
| Csp6I | GTAC | 2 cut(s) | 277, 648 |
| CviAII | CATG | 4 cut(s) | 72, 319, 502, 595 |
| CviJI | RGCY | 9 cut(s) | 8, 20, 63, 230, 342, 466, 766, 782, 815 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 20, 63, 230, 342, 466, 766, 782, 815 |
| CviQI | GTAC | 2 cut(s) | 277, 648 |
| DpnI | GATC | 3 cut(s) | 105, 135, 183 |
| DpnII | GATC | 3 cut(s) | 103, 133, 181 |
| Eam1104I | CTCTTC | 1 cut(s) | 730 |
| EarI | CTCTTC | 1 cut(s) | 730 |
| Eco47I | GGWCC | 4 cut(s) | 331, 584, 635, 801 |
| Eco57I | CTGAAG | 1 cut(s) | 162 |
| EcoO109I | RGGNCCY | 1 cut(s) | 331 |
| EcoRII | CCWGG | 1 cut(s) | 580 |
| EcoT22I | ATGCAT | 2 cut(s) | 567, 847 |
| FaeI | CATG | 4 cut(s) | 75, 322, 505, 598 |
| FaqI | GGGAC | 2 cut(s) | 344, 583 |
| FatI | CATG | 4 cut(s) | 71, 318, 501, 594 |
| FokI | GGATG | 2 cut(s) | 552, 684 |
| FspBI | CTAG | 1 cut(s) | 695 |
| HapII | CCGG | 1 cut(s) | 668 |
| Hin1II | CATG | 4 cut(s) | 75, 322, 505, 598 |
| HindIII | AAGCTT | 1 cut(s) | 764 |
| HinfI | GANTC | 1 cut(s) | 505 |
| HpaII | CCGG | 1 cut(s) | 668 |
| Hpy166II | GTNNAC | 3 cut(s) | 117, 191, 481 |
| Hpy188I | TCNGA | 3 cut(s) | 181, 532, 685 |
| Hpy188III | TCNNGA | 3 cut(s) | 374, 509, 544 |
| Hpy8I | GTNNAC | 3 cut(s) | 117, 191, 481 |
| HpyAV | CCTTC | 3 cut(s) | 85, 421, 814 |
| HpyCH4III | ACNGT | 5 cut(s) | 121, 188, 264, 478, 631 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 301, 481, 565, 701, 845 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 348 |
| Hsp92II | CATG | 4 cut(s) | 75, 322, 505, 598 |
| KflI | GGGWCCC | 1 cut(s) | 331 |
| Kzo9I | GATC | 3 cut(s) | 103, 133, 181 |
| LmnI | GCTCC | 1 cut(s) | 624 |
| LpnPI | CCDG | 6 cut(s) | 216, 365, 567, 594, 600, 681 |
| LweI | GCATC | 1 cut(s) | 574 |
| MaeI | CTAG | 1 cut(s) | 695 |
| MaeIII | GTNAC | 4 cut(s) | 209, 453, 490, 749 |
| MalI | GATC | 3 cut(s) | 105, 135, 183 |
| MboI | GATC | 3 cut(s) | 103, 133, 181 |
| MboII | GAAGA | 2 cut(s) | 168, 747 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 2 cut(s) | 483, 629 |
| MluCI | AATT | 2 cut(s) | 241, 707 |
| MnlI | CCTC | 4 cut(s) | 123, 234, 299, 532 |
| Mph1103I | ATGCAT | 2 cut(s) | 567, 847 |
| MseI | TTAA | 3 cut(s) | 12, 360, 824 |
| MspI | CCGG | 1 cut(s) | 668 |
| MspR9I | CCNGG | 2 cut(s) | 582, 669 |
| MvaI | CCWGG | 1 cut(s) | 582 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 348 |
| NciI | CCSGG | 1 cut(s) | 669 |
| NdeII | GATC | 3 cut(s) | 103, 133, 181 |
| NlaIII | CATG | 4 cut(s) | 75, 322, 505, 598 |
| NlaIV | GGNNCC | 3 cut(s) | 332, 333, 522 |
| NmuCI | GTSAC | 3 cut(s) | 209, 490, 749 |
| NsiI | ATGCAT | 2 cut(s) | 567, 847 |
| NspI | RCATGY | 1 cut(s) | 598 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 482 |
| PfeI | GAWTC | 1 cut(s) | 505 |
| PfoI | TCCNGGA | 1 cut(s) | 667 |
| PpuMI | RGGWCCY | 1 cut(s) | 331 |
| Psp5II | RGGWCCY | 1 cut(s) | 331 |
| Psp6I | CCWGG | 1 cut(s) | 580 |
| PspGI | CCWGG | 1 cut(s) | 580 |
| PspN4I | GGNNCC | 3 cut(s) | 332, 333, 522 |
| PspPI | GGNCC | 4 cut(s) | 331, 584, 635, 801 |
| PspPPI | RGGWCCY | 1 cut(s) | 331 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 2 cut(s) | 278, 649 |
| RsaNI | GTAC | 2 cut(s) | 277, 648 |
| SaqAI | TTAA | 3 cut(s) | 12, 360, 824 |
| Sau3AI | GATC | 3 cut(s) | 103, 133, 181 |
| Sau96I | GGNCC | 4 cut(s) | 331, 584, 635, 801 |
| ScrFI | CCNGG | 2 cut(s) | 582, 669 |
| SduI | GDGCHC | 2 cut(s) | 483, 629 |
| SetI | ASST | 8 cut(s) | 22, 220, 232, 526, 543, 637, 768, 817 |
| SfaNI | GCATC | 1 cut(s) | 574 |
| SinI | GGWCC | 4 cut(s) | 331, 584, 635, 801 |
| SmlI | CTYRAG | 1 cut(s) | 225 |
| SmoI | CTYRAG | 1 cut(s) | 225 |
| Sse9I | AATT | 2 cut(s) | 241, 707 |
| SsiI | CCGC | 1 cut(s) | 549 |
| SspMI | CTAG | 1 cut(s) | 695 |
| StyD4I | CCNGG | 2 cut(s) | 580, 667 |
| TaaI | ACNGT | 5 cut(s) | 121, 188, 264, 478, 631 |
| TaqI | TCGA | 5 cut(s) | 106, 253, 373, 485, 653 |
| TasI | AATT | 2 cut(s) | 241, 707 |
| TatI | WGTACW | 1 cut(s) | 647 |
| TfiI | GAWTC | 1 cut(s) | 505 |
| Tru1I | TTAA | 3 cut(s) | 12, 360, 824 |
| Tru9I | TTAA | 3 cut(s) | 12, 360, 824 |
| TscAI | CASTG | 1 cut(s) | 126 |
| TseFI | GTSAC | 3 cut(s) | 209, 490, 749 |
| Tsp45I | GTSAC | 3 cut(s) | 209, 490, 749 |
| TspDTI | ATGAA | 2 cut(s) | 440, 518 |
| TspGWI | ACGGA | 1 cut(s) | 558 |
| TspRI | CASTG | 1 cut(s) | 126 |
| VneI | GTGCAC | 1 cut(s) | 479 |
| VpaK11BI | GGWCC | 4 cut(s) | 331, 584, 635, 801 |
| XapI | RAATTY | 1 cut(s) | 241 |
| XceI | RCATGY | 1 cut(s) | 598 |
| XspI | CTAG | 1 cut(s) | 695 |
| Zsp2I | ATGCAT | 2 cut(s) | 567, 847 |