ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 405 |
| Acc36I | ACCTGC | 1 cut(s) | 673 |
| AccI | GTMKAC | 1 cut(s) | 491 |
| AclWI | GGATC | 2 cut(s) | 77, 314 |
| AcoI | YGGCCR | 1 cut(s) | 516 |
| AcsI | RAATTY | 1 cut(s) | 631 |
| AcyI | GRCGYC | 1 cut(s) | 1025 |
| AfaI | GTAC | 2 cut(s) | 297, 593 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 268, 1014, 1021, 1035, 1056, 1096 |
| AflII | CTTAAG | 1 cut(s) | 59 |
| AgsI | TTSAA | 7 cut(s) | 52, 169, 561, 733, 788, 849, 953 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1050 |
| AhlI | ACTAGT | 2 cut(s) | 245, 368 |
| AjnI | CCWGG | 3 cut(s) | 261, 518, 861 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 829, 861 |
| AluBI | AGCT | 4 cut(s) | 67, 564, 722, 929 |
| AluI | AGCT | 4 cut(s) | 67, 564, 722, 929 |
| Alw21I | GWGCWC | 1 cut(s) | 1007 |
| Alw26I | GTCTC | 1 cut(s) | 11 |
| AlwI | GGATC | 2 cut(s) | 77, 314 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 709 |
| AoxI | GGCC | 1 cut(s) | 516 |
| ApeKI | GCWGC | 1 cut(s) | 926 |
| ApoI | RAATTY | 1 cut(s) | 631 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 297 |
| AsuHPI | GGTGA | 4 cut(s) | 784, 1022, 1046, 1097 |
| AxyI | CCTNAGG | 1 cut(s) | 11 |
| BaeGI | GKGCMC | 2 cut(s) | 79, 390 |
| BalI | TGGCCA | 1 cut(s) | 518 |
| Bbv12I | GWGCWC | 1 cut(s) | 1007 |
| BbvI | GCAGC | 1 cut(s) | 938 |
| BccI | CCATC | 6 cut(s) | 205, 218, 406, 719, 763, 828 |
| BceAI | ACGGC | 1 cut(s) | 192 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 947, 981 |
| BciT130I | CCWGG | 3 cut(s) | 263, 520, 863 |
| BcoDI | GTCTC | 1 cut(s) | 11 |
| BcuI | ACTAGT | 2 cut(s) | 245, 368 |
| BfaI | CTAG | 6 cut(s) | 246, 369, 555, 659, 687, 882 |
| BfmI | CTRYAG | 2 cut(s) | 603, 666 |
| BfrI | CTTAAG | 1 cut(s) | 59 |
| BfuAI | ACCTGC | 1 cut(s) | 673 |
| BisI | GCNGC | 1 cut(s) | 927 |
| BlsI | GCNGC | 1 cut(s) | 928 |
| BmcAI | AGTACT | 2 cut(s) | 297, 593 |
| Bme1390I | CCNGG | 3 cut(s) | 263, 520, 863 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1050 |
| BmiI | GGNNCC | 1 cut(s) | 38 |
| BmrFI | CCNGG | 3 cut(s) | 263, 520, 863 |
| BmsI | GCATC | 4 cut(s) | 175, 289, 328, 955 |
| BpuEI | CTTGAG | 1 cut(s) | 804 |
| BsaHI | GRCGYC | 1 cut(s) | 1025 |
| BsaJI | CCNNGG | 2 cut(s) | 519, 861 |
| BsaWI | WCCGGW | 5 cut(s) | 1007, 1014, 1035, 1056, 1089 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 575, 605 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 268, 1014, 1021, 1035, 1056, 1096 |
| Bse1I | ACTGG | 3 cut(s) | 1029, 1050, 1087 |
| Bse21I | CCTNAGG | 1 cut(s) | 11 |
| BseBI | CCWGG | 3 cut(s) | 263, 520, 863 |
| BseDI | CCNNGG | 2 cut(s) | 519, 861 |
| BseGI | GGATG | 5 cut(s) | 319, 774, 843, 970, 986 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 268, 1014, 1021, 1035, 1056, 1096 |
| BseNI | ACTGG | 3 cut(s) | 1029, 1050, 1087 |
| BseSI | GKGCMC | 2 cut(s) | 79, 390 |
| BseXI | GCAGC | 1 cut(s) | 938 |
| BshFI | GGCC | 1 cut(s) | 518 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1007 |
| BsiSI | CCGG | 5 cut(s) | 1008, 1015, 1036, 1057, 1090 |
| BslFI | GGGAC | 2 cut(s) | 169, 536 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 268, 1014, 1021, 1035, 1056, 1096 |
| BsmAI | GTCTC | 1 cut(s) | 11 |
| BsmFI | GGGAC | 2 cut(s) | 169, 536 |
| BsnI | GGCC | 1 cut(s) | 518 |
| Bsp1286I | GDGCHC | 3 cut(s) | 79, 390, 1007 |
| Bsp143I | GATC | 3 cut(s) | 82, 306, 803 |
| BspANI | GGCC | 1 cut(s) | 518 |
| BspLI | GGNNCC | 1 cut(s) | 38 |
| BspMAI | CTGCAG | 1 cut(s) | 670 |
| BspMI | ACCTGC | 1 cut(s) | 673 |
| BspPI | GGATC | 2 cut(s) | 77, 314 |
| BspTI | CTTAAG | 1 cut(s) | 59 |
| BsrI | ACTGG | 3 cut(s) | 1029, 1050, 1087 |
| BssECI | CCNNGG | 2 cut(s) | 519, 861 |
| BssMI | GATC | 3 cut(s) | 82, 306, 803 |
| BssNAI | GTATAC | 1 cut(s) | 492 |
| BssNI | GRCGYC | 1 cut(s) | 1025 |
| Bst1107I | GTATAC | 1 cut(s) | 492 |
| Bst2UI | CCWGG | 3 cut(s) | 263, 520, 863 |
| Bst4CI | ACNGT | 1 cut(s) | 496 |
| Bst6I | CTCTTC | 2 cut(s) | 369, 374 |
| BstACI | GRCGYC | 1 cut(s) | 1025 |
| BstAFI | CTTAAG | 1 cut(s) | 59 |
| BstC8I | GCNNGC | 1 cut(s) | 531 |
| BstDEI | CTNAG | 2 cut(s) | 11, 917 |
| BstEII | GGTNACC | 2 cut(s) | 1010, 1085 |
| BstF5I | GGATG | 5 cut(s) | 319, 774, 843, 970, 986 |
| BstKTI | GATC | 3 cut(s) | 85, 309, 806 |
| BstMAI | GTCTC | 1 cut(s) | 11 |
| BstMBI | GATC | 3 cut(s) | 82, 306, 803 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 185 |
| BstNI | CCWGG | 3 cut(s) | 263, 520, 863 |
| BstNSI | RCATGY | 1 cut(s) | 162 |
| BstPI | GGTNACC | 2 cut(s) | 1010, 1085 |
| BstSCI | CCNGG | 3 cut(s) | 261, 518, 861 |
| BstSFI | CTRYAG | 2 cut(s) | 603, 666 |
| BstSLI | GKGCMC | 2 cut(s) | 79, 390 |
| BstV1I | GCAGC | 1 cut(s) | 938 |
| BstX2I | RGATCY | 2 cut(s) | 82, 306 |
| BstYI | RGATCY | 2 cut(s) | 82, 306 |
| BstZ17I | GTATAC | 1 cut(s) | 492 |
| Bsu36I | CCTNAGG | 1 cut(s) | 11 |
| BsuRI | GGCC | 1 cut(s) | 518 |
| BtsCI | GGATG | 5 cut(s) | 319, 774, 843, 970, 986 |
| BtsIMutI | CAGTG | 1 cut(s) | 1036 |
| BveI | ACCTGC | 1 cut(s) | 673 |
| Cac8I | GCNNGC | 1 cut(s) | 531 |
| CaiI | CAGNNNCTG | 1 cut(s) | 709 |
| CseI | GACGC | 2 cut(s) | 802, 1014 |
| Csp6I | GTAC | 2 cut(s) | 296, 592 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 424, 459, 733, 768 |
| CviAII | CATG | 9 cut(s) | 130, 159, 288, 326, 333, 609, 644, 911, 932 |
| CviQI | GTAC | 2 cut(s) | 296, 592 |
| DdeI | CTNAG | 2 cut(s) | 11, 917 |
| DpnI | GATC | 3 cut(s) | 84, 308, 805 |
| DpnII | GATC | 3 cut(s) | 82, 306, 803 |
| DraI | TTTAAA | 1 cut(s) | 355 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 405 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1050 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 405 |
| EaeI | YGGCCR | 1 cut(s) | 516 |
| Eam1104I | CTCTTC | 2 cut(s) | 369, 374 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1050 |
| EarI | CTCTTC | 2 cut(s) | 369, 374 |
| Eco81I | CCTNAGG | 1 cut(s) | 11 |
| Eco91I | GGTNACC | 2 cut(s) | 1010, 1085 |
| EcoO65I | GGTNACC | 2 cut(s) | 1010, 1085 |
| EcoRII | CCWGG | 3 cut(s) | 261, 518, 861 |
| FaeI | CATG | 9 cut(s) | 133, 162, 291, 329, 336, 612, 647, 914, 935 |
| FaqI | GGGAC | 2 cut(s) | 169, 536 |
| FatI | CATG | 9 cut(s) | 129, 158, 287, 325, 332, 608, 643, 910, 931 |
| FblI | GTMKAC | 1 cut(s) | 491 |
| Fnu4HI | GCNGC | 1 cut(s) | 927 |
| FokI | GGATG | 5 cut(s) | 306, 781, 850, 973, 977 |
| Fsp4HI | GCNGC | 1 cut(s) | 927 |
| FspBI | CTAG | 6 cut(s) | 246, 369, 555, 659, 687, 882 |
| GluI | GCNGC | 1 cut(s) | 927 |
| HaeIII | GGCC | 1 cut(s) | 518 |
| HapII | CCGG | 5 cut(s) | 1008, 1015, 1036, 1057, 1090 |
| HgaI | GACGC | 2 cut(s) | 802, 1014 |
| Hin1I | GRCGYC | 1 cut(s) | 1025 |
| Hin1II | CATG | 9 cut(s) | 133, 162, 291, 329, 336, 612, 647, 914, 935 |
| HincII | GTYRAC | 1 cut(s) | 45 |
| HindII | GTYRAC | 1 cut(s) | 45 |
| HinfI | GANTC | 6 cut(s) | 4, 420, 784, 1039, 1060, 1067 |
| HpaI | GTTAAC | 1 cut(s) | 45 |
| HpaII | CCGG | 5 cut(s) | 1008, 1015, 1036, 1057, 1090 |
| HphI | GGTGA | 4 cut(s) | 784, 1022, 1046, 1097 |
| Hpy166II | GTNNAC | 3 cut(s) | 45, 230, 492 |
| Hpy188I | TCNGA | 5 cut(s) | 411, 808, 1044, 1072, 1105 |
| Hpy188III | TCNNGA | 5 cut(s) | 86, 504, 831, 975, 1064 |
| Hpy8I | GTNNAC | 3 cut(s) | 45, 230, 492 |
| Hpy99I | CGWCG | 1 cut(s) | 306 |
| HpyAV | CCTTC | 3 cut(s) | 115, 574, 953 |
| HpyCH4III | ACNGT | 1 cut(s) | 496 |
| HpyCH4V | TGCA | 7 cut(s) | 162, 319, 529, 637, 668, 854, 926 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 185 |
| HpyF3I | CTNAG | 2 cut(s) | 11, 917 |
| Hsp92I | GRCGYC | 1 cut(s) | 1025 |
| Hsp92II | CATG | 9 cut(s) | 133, 162, 291, 329, 336, 612, 647, 914, 935 |
| KspAI | GTTAAC | 1 cut(s) | 45 |
| Kzo9I | GATC | 3 cut(s) | 82, 306, 803 |
| LmnI | GCTCC | 1 cut(s) | 1010 |
| Lsp1109I | GCAGC | 1 cut(s) | 938 |
| LweI | GCATC | 4 cut(s) | 175, 289, 328, 955 |
| MaeI | CTAG | 6 cut(s) | 246, 369, 555, 659, 687, 882 |
| MaeIII | GTNAC | 5 cut(s) | 172, 1010, 1031, 1052, 1085 |
| MalI | GATC | 3 cut(s) | 84, 308, 805 |
| MboI | GATC | 3 cut(s) | 82, 306, 803 |
| MboII | GAAGA | 2 cut(s) | 386, 391 |
| MfeI | CAATTG | 1 cut(s) | 849 |
| MflI | RGATCY | 2 cut(s) | 82, 306 |
| MhlI | GDGCHC | 3 cut(s) | 79, 390, 1007 |
| MlsI | TGGCCA | 1 cut(s) | 518 |
| MluCI | AATT | 5 cut(s) | 363, 458, 631, 672, 849 |
| MluNI | TGGCCA | 1 cut(s) | 518 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| MmeI | TCCRAC | 1 cut(s) | 1095 |
| MnlI | CCTC | 9 cut(s) | 270, 333, 544, 693, 699, 810, 886, 888, 1000 |
| Mox20I | TGGCCA | 1 cut(s) | 518 |
| MroXI | GAANNNNTTC | 1 cut(s) | 297 |
| MscI | TGGCCA | 1 cut(s) | 518 |
| MseI | TTAA | 5 cut(s) | 44, 60, 71, 354, 825 |
| MslI | CAYNNNNRTG | 2 cut(s) | 324, 642 |
| Msp20I | TGGCCA | 1 cut(s) | 518 |
| MspCI | CTTAAG | 1 cut(s) | 59 |
| MspI | CCGG | 5 cut(s) | 1008, 1015, 1036, 1057, 1090 |
| MspR9I | CCNGG | 3 cut(s) | 263, 520, 863 |
| MunI | CAATTG | 1 cut(s) | 849 |
| MvaI | CCWGG | 3 cut(s) | 263, 520, 863 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 185 |
| NdeII | GATC | 3 cut(s) | 82, 306, 803 |
| NlaIII | CATG | 9 cut(s) | 133, 162, 291, 329, 336, 612, 647, 914, 935 |
| NlaIV | GGNNCC | 1 cut(s) | 38 |
| NmuCI | GTSAC | 4 cut(s) | 1010, 1031, 1052, 1085 |
| NspI | RCATGY | 1 cut(s) | 162 |
| PdmI | GAANNNNTTC | 1 cut(s) | 297 |
| PfeI | GAWTC | 5 cut(s) | 420, 784, 1039, 1060, 1067 |
| PkrI | GCNGC | 1 cut(s) | 928 |
| PleI | GAGTC | 1 cut(s) | 12 |
| PpsI | GAGTC | 1 cut(s) | 12 |
| Psp6I | CCWGG | 3 cut(s) | 261, 518, 861 |
| PspEI | GGTNACC | 2 cut(s) | 1010, 1085 |
| PspGI | CCWGG | 3 cut(s) | 261, 518, 861 |
| PspN4I | GGNNCC | 1 cut(s) | 38 |
| PstI | CTGCAG | 1 cut(s) | 670 |
| PstNI | CAGNNNCTG | 1 cut(s) | 709 |
| PsuI | RGATCY | 2 cut(s) | 82, 306 |
| RsaI | GTAC | 2 cut(s) | 297, 593 |
| RsaNI | GTAC | 2 cut(s) | 296, 592 |
| RseI | CAYNNNNRTG | 2 cut(s) | 324, 642 |
| SaqAI | TTAA | 5 cut(s) | 44, 60, 71, 354, 825 |
| SatI | GCNGC | 1 cut(s) | 927 |
| Sau3AI | GATC | 3 cut(s) | 82, 306, 803 |
| ScaI | AGTACT | 2 cut(s) | 297, 593 |
| SchI | GAGTC | 1 cut(s) | 13 |
| ScrFI | CCNGG | 3 cut(s) | 263, 520, 863 |
| SduI | GDGCHC | 3 cut(s) | 79, 390, 1007 |
| SfaNI | GCATC | 4 cut(s) | 175, 289, 328, 955 |
| SfcI | CTRYAG | 2 cut(s) | 603, 666 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 324, 642 |
| SmlI | CTYRAG | 2 cut(s) | 59, 819 |
| SmoI | CTYRAG | 2 cut(s) | 59, 819 |
| SpeI | ACTAGT | 2 cut(s) | 245, 368 |
| Sse9I | AATT | 5 cut(s) | 363, 458, 631, 672, 849 |
| SspMI | CTAG | 6 cut(s) | 246, 369, 555, 659, 687, 882 |
| StyD4I | CCNGG | 3 cut(s) | 261, 518, 861 |
| TaaI | ACNGT | 1 cut(s) | 496 |
| TaqI | TCGA | 6 cut(s) | 301, 535, 802, 832, 957, 974 |
| TasI | AATT | 5 cut(s) | 363, 458, 631, 672, 849 |
| TatI | WGTACW | 2 cut(s) | 295, 591 |
| TfiI | GAWTC | 5 cut(s) | 420, 784, 1039, 1060, 1067 |
| Tru1I | TTAA | 5 cut(s) | 44, 60, 71, 354, 825 |
| Tru9I | TTAA | 5 cut(s) | 44, 60, 71, 354, 825 |
| TscAI | CASTG | 1 cut(s) | 1036 |
| TseFI | GTSAC | 4 cut(s) | 1010, 1031, 1052, 1085 |
| TseI | GCWGC | 1 cut(s) | 926 |
| Tsp45I | GTSAC | 4 cut(s) | 1010, 1031, 1052, 1085 |
| TspDTI | ATGAA | 2 cut(s) | 498, 854 |
| TspGWI | ACGGA | 1 cut(s) | 319 |
| TspRI | CASTG | 1 cut(s) | 1036 |
| Vha464I | CTTAAG | 1 cut(s) | 59 |
| XapI | RAATTY | 1 cut(s) | 631 |
| XceI | RCATGY | 1 cut(s) | 162 |
| XmiI | GTMKAC | 1 cut(s) | 491 |
| XmnI | GAANNNNTTC | 1 cut(s) | 297 |
| XspI | CTAG | 6 cut(s) | 246, 369, 555, 659, 687, 882 |
| ZrmI | AGTACT | 2 cut(s) | 297, 593 |