Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| BURP | PF03181 | 103 - 247 | 2.2e-43 | BURP domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 167 |
| Acc16I | TGCGCA | 1 cut(s) | 553 |
| Acc36I | ACCTGC | 1 cut(s) | 167 |
| AccB1I | GGYRCC | 1 cut(s) | 520 |
| AccI | GTMKAC | 1 cut(s) | 690 |
| AclWI | GGATC | 3 cut(s) | 12, 247, 260 |
| AcoI | YGGCCR | 1 cut(s) | 525 |
| AcsI | RAATTY | 2 cut(s) | 115, 444 |
| AcuI | CTGAAG | 2 cut(s) | 291, 311 |
| AfaI | GTAC | 3 cut(s) | 156, 548, 605 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 715 |
| AgsI | TTSAA | 5 cut(s) | 33, 364, 426, 591, 621 |
| AjnI | CCWGG | 2 cut(s) | 98, 292 |
| AluBI | AGCT | 2 cut(s) | 122, 152 |
| AluI | AGCT | 2 cut(s) | 122, 152 |
| AlwI | GGATC | 3 cut(s) | 12, 247, 260 |
| AoxI | GGCC | 2 cut(s) | 525, 627 |
| ApeKI | GCWGC | 2 cut(s) | 263, 429 |
| ApoI | RAATTY | 2 cut(s) | 115, 444 |
| AspLEI | GCGC | 1 cut(s) | 554 |
| AsuC2I | CCSGG | 1 cut(s) | 479 |
| AsuHPI | GGTGA | 3 cut(s) | 98, 191, 358 |
| BamHI | GGATCC | 1 cut(s) | 252 |
| BanI | GGYRCC | 1 cut(s) | 520 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 147, 179 |
| BbsI | GAAGAC | 2 cut(s) | 8, 546 |
| BbvI | GCAGC | 2 cut(s) | 250, 441 |
| BccI | CCATC | 2 cut(s) | 83, 536 |
| BciT130I | CCWGG | 2 cut(s) | 100, 294 |
| BcnI | CCSGG | 1 cut(s) | 479 |
| BfmI | CTRYAG | 1 cut(s) | 652 |
| BfuAI | ACCTGC | 1 cut(s) | 167 |
| BglII | AGATCT | 2 cut(s) | 322, 695 |
| BisI | GCNGC | 2 cut(s) | 264, 430 |
| BlsI | GCNGC | 2 cut(s) | 265, 431 |
| BmcAI | AGTACT | 1 cut(s) | 548 |
| Bme1390I | CCNGG | 3 cut(s) | 100, 294, 479 |
| BmiI | GGNNCC | 3 cut(s) | 254, 291, 522 |
| BmrFI | CCNGG | 3 cut(s) | 100, 294, 479 |
| BmsI | GCATC | 2 cut(s) | 56, 199 |
| BpiI | GAAGAC | 2 cut(s) | 8, 546 |
| BpmI | CTGGAG | 1 cut(s) | 690 |
| BpuMI | CCSGG | 1 cut(s) | 479 |
| Bsa29I | ATCGAT | 1 cut(s) | 576 |
| BsaJI | CCNNGG | 2 cut(s) | 477, 624 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 715 |
| Bse118I | RCCGGY | 1 cut(s) | 523 |
| Bse1I | ACTGG | 3 cut(s) | 116, 205, 673 |
| Bse3DI | GCAATG | 1 cut(s) | 137 |
| BseBI | CCWGG | 2 cut(s) | 100, 294 |
| BseCI | ATCGAT | 1 cut(s) | 576 |
| BseDI | CCNNGG | 2 cut(s) | 477, 624 |
| BseGI | GGATG | 2 cut(s) | 108, 214 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 715 |
| BseMI | GCAATG | 1 cut(s) | 137 |
| BseNI | ACTGG | 3 cut(s) | 116, 205, 673 |
| BseXI | GCAGC | 2 cut(s) | 250, 441 |
| BshFI | GGCC | 2 cut(s) | 527, 629 |
| BshNI | GGYRCC | 1 cut(s) | 520 |
| BshVI | ATCGAT | 1 cut(s) | 576 |
| BsiSI | CCGG | 2 cut(s) | 479, 524 |
| BslFI | GGGAC | 2 cut(s) | 211, 460 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 715 |
| BsmFI | GGGAC | 2 cut(s) | 211, 460 |
| BsnI | GGCC | 2 cut(s) | 527, 629 |
| Bsp1407I | TGTACA | 1 cut(s) | 154 |
| Bsp143I | GATC | 6 cut(s) | 4, 252, 322, 573, 594, 695 |
| BspANI | GGCC | 2 cut(s) | 527, 629 |
| BspDI | ATCGAT | 1 cut(s) | 576 |
| BspLI | GGNNCC | 3 cut(s) | 254, 291, 522 |
| BspMI | ACCTGC | 1 cut(s) | 167 |
| BspPI | GGATC | 3 cut(s) | 12, 247, 260 |
| BspT107I | GGYRCC | 1 cut(s) | 520 |
| BsrDI | GCAATG | 1 cut(s) | 137 |
| BsrFI | RCCGGY | 1 cut(s) | 523 |
| BsrGI | TGTACA | 1 cut(s) | 154 |
| BsrI | ACTGG | 3 cut(s) | 116, 205, 673 |
| BssAI | RCCGGY | 1 cut(s) | 523 |
| BssECI | CCNNGG | 2 cut(s) | 477, 624 |
| BssMI | GATC | 6 cut(s) | 4, 252, 322, 573, 594, 695 |
| Bst2UI | CCWGG | 2 cut(s) | 100, 294 |
| Bst4CI | ACNGT | 3 cut(s) | 194, 346, 586 |
| BstAUI | TGTACA | 1 cut(s) | 154 |
| BstF5I | GGATG | 2 cut(s) | 108, 214 |
| BstHHI | GCGC | 1 cut(s) | 554 |
| BstKTI | GATC | 6 cut(s) | 7, 255, 325, 576, 597, 698 |
| BstMBI | GATC | 6 cut(s) | 4, 252, 322, 573, 594, 695 |
| BstNI | CCWGG | 2 cut(s) | 100, 294 |
| BstSCI | CCNGG | 3 cut(s) | 98, 292, 477 |
| BstSFI | CTRYAG | 1 cut(s) | 652 |
| BstV1I | GCAGC | 2 cut(s) | 250, 441 |
| BstV2I | GAAGAC | 2 cut(s) | 8, 546 |
| BstX2I | RGATCY | 3 cut(s) | 252, 322, 695 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 683 |
| BstYI | RGATCY | 3 cut(s) | 252, 322, 695 |
| Bsu15I | ATCGAT | 1 cut(s) | 576 |
| BsuRI | GGCC | 2 cut(s) | 527, 629 |
| BsuTUI | ATCGAT | 1 cut(s) | 576 |
| BtsCI | GGATG | 2 cut(s) | 108, 214 |
| BtsI | GCAGTG | 1 cut(s) | 60 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 199 |
| BveI | ACCTGC | 1 cut(s) | 167 |
| CfoI | GCGC | 1 cut(s) | 554 |
| Cfr10I | RCCGGY | 1 cut(s) | 523 |
| ClaI | ATCGAT | 1 cut(s) | 576 |
| CseI | GACGC | 1 cut(s) | 383 |
| Csp6I | GTAC | 3 cut(s) | 155, 547, 604 |
| CviJI | RGCY | 5 cut(s) | 122, 152, 292, 527, 629 |
| CviKI_1 | RGCY | 5 cut(s) | 122, 152, 292, 527, 629 |
| CviQI | GTAC | 3 cut(s) | 155, 547, 604 |
| DpnI | GATC | 6 cut(s) | 6, 254, 324, 575, 596, 697 |
| DpnII | GATC | 6 cut(s) | 4, 252, 322, 573, 594, 695 |
| EaeI | YGGCCR | 1 cut(s) | 525 |
| Eco57I | CTGAAG | 2 cut(s) | 291, 311 |
| EcoRI | GAATTC | 1 cut(s) | 115 |
| EcoRII | CCWGG | 2 cut(s) | 98, 292 |
| FaiI | YATR | 9 cut(s) | 42, 231, 259, 261, 307, 454, 654, 723, 729 |
| FaqI | GGGAC | 2 cut(s) | 211, 460 |
| FauNDI | CATATG | 1 cut(s) | 259 |
| FblI | GTMKAC | 1 cut(s) | 690 |
| Fnu4HI | GCNGC | 2 cut(s) | 264, 430 |
| FokI | GGATG | 2 cut(s) | 115, 221 |
| Fsp4HI | GCNGC | 2 cut(s) | 264, 430 |
| FspI | TGCGCA | 1 cut(s) | 553 |
| GlaI | GCGC | 1 cut(s) | 553 |
| GluI | GCNGC | 2 cut(s) | 264, 430 |
| GsuI | CTGGAG | 1 cut(s) | 690 |
| HaeIII | GGCC | 2 cut(s) | 527, 629 |
| HapII | CCGG | 2 cut(s) | 479, 524 |
| HgaI | GACGC | 1 cut(s) | 383 |
| HhaI | GCGC | 1 cut(s) | 554 |
| Hin6I | GCGC | 1 cut(s) | 552 |
| HinP1I | GCGC | 1 cut(s) | 552 |
| HincII | GTYRAC | 1 cut(s) | 691 |
| HindII | GTYRAC | 1 cut(s) | 691 |
| HinfI | GANTC | 4 cut(s) | 357, 566, 672, 687 |
| HpaII | CCGG | 2 cut(s) | 479, 524 |
| HphI | GGTGA | 3 cut(s) | 98, 191, 358 |
| Hpy166II | GTNNAC | 1 cut(s) | 691 |
| Hpy188I | TCNGA | 2 cut(s) | 271, 599 |
| Hpy188III | TCNNGA | 1 cut(s) | 361 |
| Hpy8I | GTNNAC | 1 cut(s) | 691 |
| Hpy99I | CGWCG | 1 cut(s) | 399 |
| HpyAV | CCTTC | 1 cut(s) | 153 |
| HpyCH4III | ACNGT | 3 cut(s) | 194, 346, 586 |
| HpyCH4IV | ACGT | 2 cut(s) | 285, 606 |
| HpyCH4V | TGCA | 3 cut(s) | 176, 407, 485 |
| HpySE526I | ACGT | 2 cut(s) | 285, 606 |
| HspAI | GCGC | 1 cut(s) | 552 |
| Kzo9I | GATC | 6 cut(s) | 4, 252, 322, 573, 594, 695 |
| LmnI | GCTCC | 1 cut(s) | 289 |
| Lsp1109I | GCAGC | 2 cut(s) | 250, 441 |
| LweI | GCATC | 2 cut(s) | 56, 199 |
| MaeII | ACGT | 2 cut(s) | 285, 606 |
| MaeIII | GTNAC | 4 cut(s) | 188, 220, 346, 374 |
| MalI | GATC | 6 cut(s) | 6, 254, 324, 575, 596, 697 |
| MboI | GATC | 6 cut(s) | 4, 252, 322, 573, 594, 695 |
| MboII | GAAGA | 5 cut(s) | 8, 284, 287, 317, 551 |
| MflI | RGATCY | 3 cut(s) | 252, 322, 695 |
| MluCI | AATT | 4 cut(s) | 33, 63, 115, 444 |
| MlyI | GAGTC | 2 cut(s) | 681, 696 |
| MnlI | CCTC | 4 cut(s) | 277, 511, 619, 709 |
| MseI | TTAA | 1 cut(s) | 299 |
| MspI | CCGG | 2 cut(s) | 479, 524 |
| MspR9I | CCNGG | 3 cut(s) | 100, 294, 479 |
| MvaI | CCWGG | 2 cut(s) | 100, 294 |
| NciI | CCSGG | 1 cut(s) | 479 |
| NdeI | CATATG | 1 cut(s) | 259 |
| NdeII | GATC | 6 cut(s) | 4, 252, 322, 573, 594, 695 |
| NlaIV | GGNNCC | 3 cut(s) | 254, 291, 522 |
| NmuCI | GTSAC | 1 cut(s) | 346 |
| NsbI | TGCGCA | 1 cut(s) | 553 |
| PaqCI | CACCTGC | 1 cut(s) | 167 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 603 |
| PfeI | GAWTC | 2 cut(s) | 357, 566 |
| PfoI | TCCNGGA | 1 cut(s) | 98 |
| PkrI | GCNGC | 2 cut(s) | 265, 431 |
| PleI | GAGTC | 2 cut(s) | 680, 695 |
| PpsI | GAGTC | 2 cut(s) | 680, 695 |
| Psp6I | CCWGG | 2 cut(s) | 98, 292 |
| PspGI | CCWGG | 2 cut(s) | 98, 292 |
| PspN4I | GGNNCC | 3 cut(s) | 254, 291, 522 |
| PsuI | RGATCY | 3 cut(s) | 252, 322, 695 |
| RsaI | GTAC | 3 cut(s) | 156, 548, 605 |
| RsaNI | GTAC | 3 cut(s) | 155, 547, 604 |
| SalI | GTCGAC | 1 cut(s) | 689 |
| SaqAI | TTAA | 1 cut(s) | 299 |
| SatI | GCNGC | 2 cut(s) | 264, 430 |
| Sau3AI | GATC | 6 cut(s) | 4, 252, 322, 573, 594, 695 |
| ScaI | AGTACT | 1 cut(s) | 548 |
| SchI | GAGTC | 2 cut(s) | 681, 696 |
| ScrFI | CCNGG | 3 cut(s) | 100, 294, 479 |
| SfaNI | GCATC | 2 cut(s) | 56, 199 |
| SfcI | CTRYAG | 1 cut(s) | 652 |
| Sse9I | AATT | 4 cut(s) | 33, 63, 115, 444 |
| StyD4I | CCNGG | 3 cut(s) | 98, 292, 477 |
| TaaI | ACNGT | 3 cut(s) | 194, 346, 586 |
| TaiI | ACGT | 2 cut(s) | 288, 609 |
| TaqI | TCGA | 2 cut(s) | 576, 690 |
| TasI | AATT | 4 cut(s) | 33, 63, 115, 444 |
| TatI | WGTACW | 2 cut(s) | 154, 546 |
| TfiI | GAWTC | 2 cut(s) | 357, 566 |
| Tru1I | TTAA | 1 cut(s) | 299 |
| Tru9I | TTAA | 1 cut(s) | 299 |
| TscAI | CASTG | 2 cut(s) | 60, 199 |
| TseFI | GTSAC | 1 cut(s) | 346 |
| TseI | GCWGC | 2 cut(s) | 263, 429 |
| Tsp45I | GTSAC | 1 cut(s) | 346 |
| TspDTI | ATGAA | 1 cut(s) | 509 |
| TspRI | CASTG | 2 cut(s) | 60, 199 |
| XapI | RAATTY | 2 cut(s) | 115, 444 |
| XmiI | GTMKAC | 1 cut(s) | 690 |
| ZrmI | AGTACT | 1 cut(s) | 548 |