Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 248 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 30 |
| AccII | CGCG | 3 cut(s) | 82, 216, 630 |
| AciI | CCGC | 4 cut(s) | 82, 245, 443, 551 |
| AclI | AACGTT | 1 cut(s) | 125 |
| AclWI | GGATC | 2 cut(s) | 320, 333 |
| AcoI | YGGCCR | 1 cut(s) | 97 |
| AcsI | RAATTY | 2 cut(s) | 554, 577 |
| AfaI | GTAC | 2 cut(s) | 47, 529 |
| AfeI | AGCGCT | 1 cut(s) | 515 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 24, 30, 290, 301, 543, 616, 619 |
| AflIII | ACRYGT | 1 cut(s) | 530 |
| AjnI | CCWGG | 3 cut(s) | 23, 320, 488 |
| AluBI | AGCT | 4 cut(s) | 67, 156, 233, 542 |
| AluI | AGCT | 4 cut(s) | 67, 156, 233, 542 |
| Alw21I | GWGCWC | 1 cut(s) | 69 |
| AlwI | GGATC | 2 cut(s) | 320, 333 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 30 |
| Ama87I | CYCGRG | 2 cut(s) | 57, 261 |
| Aor51HI | AGCGCT | 1 cut(s) | 515 |
| AoxI | GGCC | 8 cut(s) | 97, 258, 281, 292, 303, 318, 394, 478 |
| ApaI | GGGCCC | 1 cut(s) | 262 |
| ApeKI | GCWGC | 3 cut(s) | 34, 156, 230 |
| ApoI | RAATTY | 2 cut(s) | 554, 577 |
| AspLEI | GCGC | 3 cut(s) | 82, 216, 516 |
| AspS9I | GGNCC | 8 cut(s) | 258, 259, 281, 292, 303, 318, 394, 479 |
| AsuC2I | CCSGG | 5 cut(s) | 58, 59, 146, 262, 263 |
| AsuHPI | GGTGA | 1 cut(s) | 478 |
| AvaI | CYCGRG | 2 cut(s) | 57, 261 |
| BaeGI | GKGCMC | 1 cut(s) | 262 |
| BamHI | GGATCC | 1 cut(s) | 325 |
| BanI | GGYRCC | 1 cut(s) | 248 |
| BanII | GRGCYC | 2 cut(s) | 69, 262 |
| BauI | CACGAG | 1 cut(s) | 171 |
| Bbv12I | GWGCWC | 1 cut(s) | 69 |
| BbvI | GCAGC | 3 cut(s) | 21, 143, 242 |
| BccI | CCATC | 1 cut(s) | 260 |
| BceAI | ACGGC | 2 cut(s) | 177, 227 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 29 |
| BciT130I | CCWGG | 3 cut(s) | 25, 322, 490 |
| BcnI | CCSGG | 5 cut(s) | 58, 59, 146, 262, 263 |
| BfaI | CTAG | 1 cut(s) | 588 |
| BfoI | RGCGCY | 1 cut(s) | 517 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 257 |
| BglII | AGATCT | 1 cut(s) | 92 |
| BisI | GCNGC | 3 cut(s) | 35, 157, 231 |
| BlsI | GCNGC | 3 cut(s) | 36, 158, 232 |
| Bme1390I | CCNGG | 8 cut(s) | 25, 58, 59, 146, 262, 263, 322, 490 |
| BmeT110I | CYCGRG | 2 cut(s) | 57, 261 |
| BmgT120I | GGNCC | 8 cut(s) | 258, 259, 281, 292, 303, 318, 394, 479 |
| BmiI | GGNNCC | 4 cut(s) | 250, 260, 327, 395 |
| BmrFI | CCNGG | 8 cut(s) | 25, 58, 59, 146, 262, 263, 322, 490 |
| BmsI | GCATC | 2 cut(s) | 21, 408 |
| BpmI | CTGGAG | 1 cut(s) | 511 |
| BpuMI | CCSGG | 5 cut(s) | 58, 59, 146, 262, 263 |
| BsaAI | YACGTR | 1 cut(s) | 531 |
| BsaJI | CCNNGG | 4 cut(s) | 24, 57, 261, 321 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 24, 30, 290, 301, 543, 616, 619 |
| Bse118I | RCCGGY | 2 cut(s) | 99, 350 |
| BseBI | CCWGG | 3 cut(s) | 25, 322, 490 |
| BseDI | CCNNGG | 4 cut(s) | 24, 57, 261, 321 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 24, 30, 290, 301, 543, 616, 619 |
| BseRI | GAGGAG | 1 cut(s) | 602 |
| BseSI | GKGCMC | 1 cut(s) | 262 |
| BseXI | GCAGC | 3 cut(s) | 21, 143, 242 |
| BsgI | GTGCAG | 1 cut(s) | 142 |
| Bsh1236I | CGCG | 3 cut(s) | 82, 216, 630 |
| BshFI | GGCC | 8 cut(s) | 99, 260, 283, 294, 305, 320, 396, 480 |
| BshNI | GGYRCC | 1 cut(s) | 248 |
| BsiHKAI | GWGCWC | 1 cut(s) | 69 |
| BsiHKCI | CYCGRG | 2 cut(s) | 57, 261 |
| BsiSI | CCGG | 8 cut(s) | 38, 58, 100, 145, 262, 284, 295, 351 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 24, 30, 290, 301, 543, 616, 619 |
| BsnI | GGCC | 8 cut(s) | 99, 260, 283, 294, 305, 320, 396, 480 |
| BsoBI | CYCGRG | 2 cut(s) | 57, 261 |
| Bsp120I | GGGCCC | 1 cut(s) | 258 |
| Bsp1286I | GDGCHC | 2 cut(s) | 69, 262 |
| Bsp143I | GATC | 2 cut(s) | 92, 325 |
| BspACI | CCGC | 4 cut(s) | 82, 245, 443, 551 |
| BspANI | GGCC | 8 cut(s) | 99, 260, 283, 294, 305, 320, 396, 480 |
| BspFNI | CGCG | 3 cut(s) | 82, 216, 630 |
| BspLI | GGNNCC | 4 cut(s) | 250, 260, 327, 395 |
| BspPI | GGATC | 2 cut(s) | 320, 333 |
| BspQI | GCTCTTC | 1 cut(s) | 504 |
| BspT107I | GGYRCC | 1 cut(s) | 248 |
| BsrFI | RCCGGY | 2 cut(s) | 99, 350 |
| BssAI | RCCGGY | 2 cut(s) | 99, 350 |
| BssECI | CCNNGG | 4 cut(s) | 24, 57, 261, 321 |
| BssMI | GATC | 2 cut(s) | 92, 325 |
| BssSI | CACGAG | 1 cut(s) | 171 |
| Bst2BI | CACGAG | 1 cut(s) | 171 |
| Bst2UI | CCWGG | 3 cut(s) | 25, 322, 490 |
| Bst4CI | ACNGT | 1 cut(s) | 449 |
| Bst6I | CTCTTC | 1 cut(s) | 504 |
| BstBAI | YACGTR | 1 cut(s) | 531 |
| BstC8I | GCNNGC | 4 cut(s) | 32, 352, 423, 549 |
| BstDEI | CTNAG | 2 cut(s) | 517, 567 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 617 |
| BstFNI | CGCG | 3 cut(s) | 82, 216, 630 |
| BstH2I | RGCGCY | 1 cut(s) | 517 |
| BstHHI | GCGC | 3 cut(s) | 82, 216, 516 |
| BstKTI | GATC | 2 cut(s) | 95, 328 |
| BstMBI | GATC | 2 cut(s) | 92, 325 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 176, 257, 402, 548 |
| BstNI | CCWGG | 3 cut(s) | 25, 322, 490 |
| BstSCI | CCNGG | 8 cut(s) | 23, 56, 57, 144, 260, 261, 320, 488 |
| BstSLI | GKGCMC | 1 cut(s) | 262 |
| BstUI | CGCG | 3 cut(s) | 82, 216, 630 |
| BstV1I | GCAGC | 3 cut(s) | 21, 143, 242 |
| BstX2I | RGATCY | 2 cut(s) | 92, 325 |
| BstYI | RGATCY | 2 cut(s) | 92, 325 |
| BsuRI | GGCC | 8 cut(s) | 99, 260, 283, 294, 305, 320, 396, 480 |
| BtsI | GCAGTG | 1 cut(s) | 13 |
| BtsIMutI | CAGTG | 1 cut(s) | 13 |
| Cac8I | GCNNGC | 4 cut(s) | 32, 352, 423, 549 |
| CaiI | CAGNNNCTG | 1 cut(s) | 30 |
| CfoI | GCGC | 3 cut(s) | 82, 216, 516 |
| Cfr10I | RCCGGY | 2 cut(s) | 99, 350 |
| Cfr13I | GGNCC | 8 cut(s) | 258, 259, 281, 292, 303, 318, 394, 479 |
| Cfr9I | CCCGGG | 2 cut(s) | 57, 261 |
| CseI | GACGC | 2 cut(s) | 61, 212 |
| Csp6I | GTAC | 2 cut(s) | 46, 528 |
| CviAII | CATG | 3 cut(s) | 225, 410, 602 |
| CviQI | GTAC | 2 cut(s) | 46, 528 |
| DdeI | CTNAG | 2 cut(s) | 517, 567 |
| DpnI | GATC | 2 cut(s) | 94, 327 |
| DpnII | GATC | 2 cut(s) | 92, 325 |
| EaeI | YGGCCR | 1 cut(s) | 97 |
| Eam1104I | CTCTTC | 1 cut(s) | 504 |
| EarI | CTCTTC | 1 cut(s) | 504 |
| EciI | GGCGGA | 2 cut(s) | 458, 566 |
| Ecl136II | GAGCTC | 1 cut(s) | 67 |
| Eco24I | GRGCYC | 2 cut(s) | 69, 262 |
| Eco47III | AGCGCT | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 1 cut(s) | 67 |
| Eco88I | CYCGRG | 2 cut(s) | 57, 261 |
| EcoICRI | GAGCTC | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 617 |
| EcoRII | CCWGG | 3 cut(s) | 23, 320, 488 |
| EcoT38I | GRGCYC | 2 cut(s) | 69, 262 |
| FaeI | CATG | 3 cut(s) | 228, 413, 605 |
| FaiI | YATR | 4 cut(s) | 226, 411, 464, 603 |
| FatI | CATG | 3 cut(s) | 224, 409, 601 |
| FauI | CCCGC | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 3 cut(s) | 35, 157, 231 |
| FriOI | GRGCYC | 2 cut(s) | 69, 262 |
| Fsp4HI | GCNGC | 3 cut(s) | 35, 157, 231 |
| FspBI | CTAG | 1 cut(s) | 588 |
| GlaI | GCGC | 3 cut(s) | 81, 215, 515 |
| GluI | GCNGC | 3 cut(s) | 35, 157, 231 |
| GsuI | CTGGAG | 1 cut(s) | 511 |
| HaeII | RGCGCY | 1 cut(s) | 517 |
| HaeIII | GGCC | 8 cut(s) | 99, 260, 283, 294, 305, 320, 396, 480 |
| HapII | CCGG | 8 cut(s) | 38, 58, 100, 145, 262, 284, 295, 351 |
| HgaI | GACGC | 2 cut(s) | 61, 212 |
| HhaI | GCGC | 3 cut(s) | 82, 216, 516 |
| Hin1II | CATG | 3 cut(s) | 228, 413, 605 |
| Hin6I | GCGC | 3 cut(s) | 80, 214, 514 |
| HinP1I | GCGC | 3 cut(s) | 80, 214, 514 |
| HincII | GTYRAC | 1 cut(s) | 268 |
| HindII | GTYRAC | 1 cut(s) | 268 |
| HindIII | AAGCTT | 1 cut(s) | 540 |
| HinfI | GANTC | 4 cut(s) | 20, 141, 367, 497 |
| HpaII | CCGG | 8 cut(s) | 38, 58, 100, 145, 262, 284, 295, 351 |
| HphI | GGTGA | 1 cut(s) | 478 |
| Hpy166II | GTNNAC | 1 cut(s) | 268 |
| Hpy188I | TCNGA | 4 cut(s) | 330, 417, 431, 598 |
| Hpy188III | TCNNGA | 3 cut(s) | 90, 173, 371 |
| Hpy8I | GTNNAC | 1 cut(s) | 268 |
| Hpy99I | CGWCG | 2 cut(s) | 206, 213 |
| HpyAV | CCTTC | 1 cut(s) | 436 |
| HpyCH4III | ACNGT | 1 cut(s) | 449 |
| HpyCH4IV | ACGT | 2 cut(s) | 125, 530 |
| HpyCH4V | TGCA | 6 cut(s) | 159, 186, 405, 421, 458, 625 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 176, 257, 402, 548 |
| HpyF3I | CTNAG | 2 cut(s) | 517, 567 |
| HpySE526I | ACGT | 2 cut(s) | 125, 530 |
| Hsp92II | CATG | 3 cut(s) | 228, 413, 605 |
| HspAI | GCGC | 3 cut(s) | 80, 214, 514 |
| KroI | GCCGGC | 1 cut(s) | 350 |
| KroNI | GCCGGC | 1 cut(s) | 352 |
| Kzo9I | GATC | 2 cut(s) | 92, 325 |
| LguI | GCTCTTC | 1 cut(s) | 504 |
| LmnI | GCTCC | 2 cut(s) | 153, 492 |
| Lsp1109I | GCAGC | 3 cut(s) | 21, 143, 242 |
| LweI | GCATC | 2 cut(s) | 21, 408 |
| MaeI | CTAG | 1 cut(s) | 588 |
| MaeII | ACGT | 2 cut(s) | 125, 530 |
| MalI | GATC | 2 cut(s) | 94, 327 |
| MboI | GATC | 2 cut(s) | 92, 325 |
| MboII | GAAGA | 1 cut(s) | 521 |
| MfeI | CAATTG | 1 cut(s) | 51 |
| MflI | RGATCY | 2 cut(s) | 92, 325 |
| MhlI | GDGCHC | 2 cut(s) | 69, 262 |
| MluCI | AATT | 3 cut(s) | 51, 554, 577 |
| MlyI | GAGTC | 2 cut(s) | 29, 135 |
| MmeI | TCCRAC | 1 cut(s) | 454 |
| MnlI | CCTC | 7 cut(s) | 160, 169, 316, 518, 613, 620, 623 |
| MroNI | GCCGGC | 1 cut(s) | 350 |
| MseI | TTAA | 1 cut(s) | 360 |
| MspI | CCGG | 8 cut(s) | 38, 58, 100, 145, 262, 284, 295, 351 |
| MspR9I | CCNGG | 8 cut(s) | 25, 58, 59, 146, 262, 263, 322, 490 |
| MunI | CAATTG | 1 cut(s) | 51 |
| MvaI | CCWGG | 3 cut(s) | 25, 322, 490 |
| MvnI | CGCG | 3 cut(s) | 82, 216, 630 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 176, 257, 402, 548 |
| NaeI | GCCGGC | 1 cut(s) | 352 |
| NciI | CCSGG | 5 cut(s) | 58, 59, 146, 262, 263 |
| NdeII | GATC | 2 cut(s) | 92, 325 |
| NgoMIV | GCCGGC | 1 cut(s) | 350 |
| NlaIII | CATG | 3 cut(s) | 228, 413, 605 |
| NlaIV | GGNNCC | 4 cut(s) | 250, 260, 327, 395 |
| NmeAIII | GCCGAG | 1 cut(s) | 43 |
| PciSI | GCTCTTC | 1 cut(s) | 504 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 351 |
| PdiI | GCCGGC | 1 cut(s) | 352 |
| PfeI | GAWTC | 2 cut(s) | 367, 497 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 30 |
| PkrI | GCNGC | 3 cut(s) | 36, 158, 232 |
| PleI | GAGTC | 2 cut(s) | 28, 135 |
| PpsI | GAGTC | 2 cut(s) | 28, 135 |
| Ppu21I | YACGTR | 1 cut(s) | 531 |
| Psp124BI | GAGCTC | 1 cut(s) | 69 |
| Psp1406I | AACGTT | 1 cut(s) | 125 |
| Psp6I | CCWGG | 3 cut(s) | 23, 320, 488 |
| PspGI | CCWGG | 3 cut(s) | 23, 320, 488 |
| PspN4I | GGNNCC | 4 cut(s) | 250, 260, 327, 395 |
| PspOMI | GGGCCC | 1 cut(s) | 258 |
| PspPI | GGNCC | 8 cut(s) | 258, 259, 281, 292, 303, 318, 394, 479 |
| PstNI | CAGNNNCTG | 1 cut(s) | 30 |
| PsuI | RGATCY | 2 cut(s) | 92, 325 |
| RsaI | GTAC | 2 cut(s) | 47, 529 |
| RsaNI | GTAC | 2 cut(s) | 46, 528 |
| SacI | GAGCTC | 1 cut(s) | 69 |
| SapI | GCTCTTC | 1 cut(s) | 504 |
| SaqAI | TTAA | 1 cut(s) | 360 |
| SatI | GCNGC | 3 cut(s) | 35, 157, 231 |
| Sau3AI | GATC | 2 cut(s) | 92, 325 |
| Sau96I | GGNCC | 8 cut(s) | 258, 259, 281, 292, 303, 318, 394, 479 |
| SchI | GAGTC | 2 cut(s) | 29, 135 |
| ScrFI | CCNGG | 8 cut(s) | 25, 58, 59, 146, 262, 263, 322, 490 |
| SduI | GDGCHC | 2 cut(s) | 69, 262 |
| SfaNI | GCATC | 2 cut(s) | 21, 408 |
| SmaI | CCCGGG | 2 cut(s) | 59, 263 |
| SrfI | GCCCGGGC | 1 cut(s) | 59 |
| Sse9I | AATT | 3 cut(s) | 51, 554, 577 |
| SsiI | CCGC | 4 cut(s) | 82, 245, 443, 551 |
| SspMI | CTAG | 1 cut(s) | 588 |
| SstI | GAGCTC | 1 cut(s) | 69 |
| StyD4I | CCNGG | 8 cut(s) | 23, 56, 57, 144, 260, 261, 320, 488 |
| TaaI | ACNGT | 1 cut(s) | 449 |
| TaiI | ACGT | 2 cut(s) | 128, 533 |
| TaqI | TCGA | 1 cut(s) | 208 |
| TasI | AATT | 3 cut(s) | 51, 554, 577 |
| TfiI | GAWTC | 2 cut(s) | 367, 497 |
| Tru1I | TTAA | 1 cut(s) | 360 |
| Tru9I | TTAA | 1 cut(s) | 360 |
| TscAI | CASTG | 1 cut(s) | 13 |
| TseI | GCWGC | 3 cut(s) | 34, 156, 230 |
| TspDTI | ATGAA | 1 cut(s) | 522 |
| TspMI | CCCGGG | 2 cut(s) | 57, 261 |
| TspRI | CASTG | 1 cut(s) | 13 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 30 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 617 |
| XapI | RAATTY | 2 cut(s) | 554, 577 |
| XmaI | CCCGGG | 2 cut(s) | 57, 261 |
| XspI | CTAG | 1 cut(s) | 588 |