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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 652 |
| AccII | CGCG | 2 cut(s) | 110, 814 |
| AccIII | TCCGGA | 1 cut(s) | 625 |
| AciI | CCGC | 4 cut(s) | 108, 652, 812, 836 |
| AcoI | YGGCCR | 1 cut(s) | 287 |
| AcuI | CTGAAG | 2 cut(s) | 438, 620 |
| AdeI | CACNNNGTG | 1 cut(s) | 350 |
| AfaI | GTAC | 1 cut(s) | 672 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 345, 346, 457, 632, 771 |
| AflIII | ACRYGT | 1 cut(s) | 270 |
| AgsI | TTSAA | 3 cut(s) | 62, 143, 379 |
| AjiI | CACGTC | 1 cut(s) | 608 |
| AjnI | CCWGG | 2 cut(s) | 284, 770 |
| AluBI | AGCT | 7 cut(s) | 74, 121, 161, 175, 224, 238, 382 |
| AluI | AGCT | 7 cut(s) | 74, 121, 161, 175, 224, 238, 382 |
| Alw21I | GWGCWC | 7 cut(s) | 76, 123, 135, 163, 177, 310, 625 |
| Alw26I | GTCTC | 5 cut(s) | 322, 614, 797, 821, 888 |
| Aor13HI | TCCGGA | 1 cut(s) | 625 |
| AoxI | GGCC | 4 cut(s) | 105, 218, 287, 352 |
| ApeKI | GCWGC | 1 cut(s) | 253 |
| AspLEI | GCGC | 2 cut(s) | 816, 855 |
| AspS9I | GGNCC | 5 cut(s) | 105, 182, 245, 353, 747 |
| AsuHPI | GGTGA | 1 cut(s) | 732 |
| AvaII | GGWCC | 3 cut(s) | 182, 245, 747 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 405, 438 |
| BalI | TGGCCA | 1 cut(s) | 289 |
| BanII | GRGCYC | 4 cut(s) | 76, 123, 163, 177 |
| BauI | CACGAG | 1 cut(s) | 75 |
| BbsI | GAAGAC | 1 cut(s) | 543 |
| Bbv12I | GWGCWC | 7 cut(s) | 76, 123, 135, 163, 177, 310, 625 |
| BbvI | GCAGC | 1 cut(s) | 240 |
| BccI | CCATC | 1 cut(s) | 630 |
| BceAI | ACGGC | 2 cut(s) | 175, 717 |
| BciT130I | CCWGG | 2 cut(s) | 286, 772 |
| BclI | TGATCA | 2 cut(s) | 433, 469 |
| BcoDI | GTCTC | 5 cut(s) | 322, 614, 797, 821, 888 |
| BfoI | RGCGCY | 1 cut(s) | 856 |
| BisI | GCNGC | 2 cut(s) | 108, 254 |
| BlpI | GCTNAGC | 1 cut(s) | 234 |
| BlsI | GCNGC | 2 cut(s) | 109, 255 |
| Bme1390I | CCNGG | 2 cut(s) | 286, 772 |
| Bme18I | GGWCC | 3 cut(s) | 182, 245, 747 |
| BmgBI | CACGTC | 1 cut(s) | 608 |
| BmgT120I | GGNCC | 5 cut(s) | 105, 182, 245, 353, 747 |
| BmiI | GGNNCC | 1 cut(s) | 660 |
| BmrFI | CCNGG | 2 cut(s) | 286, 772 |
| BmsI | GCATC | 4 cut(s) | 451, 831, 855, 872 |
| BpiI | GAAGAC | 1 cut(s) | 543 |
| BpmI | CTGGAG | 1 cut(s) | 306 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 234 |
| BpuEI | CTTGAG | 2 cut(s) | 229, 278 |
| Bsa29I | ATCGAT | 1 cut(s) | 501 |
| BsaBI | GATNNNNATC | 1 cut(s) | 143 |
| BsaI | GGTCTC | 1 cut(s) | 322 |
| BsaJI | CCNNGG | 2 cut(s) | 698, 743 |
| BsaWI | WCCGGW | 1 cut(s) | 625 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 345, 346, 457, 632, 771 |
| Bse1I | ACTGG | 1 cut(s) | 311 |
| Bse3DI | GCAATG | 2 cut(s) | 750, 887 |
| Bse8I | GATNNNNATC | 1 cut(s) | 143 |
| BseAI | TCCGGA | 1 cut(s) | 625 |
| BseBI | CCWGG | 2 cut(s) | 286, 772 |
| BseCI | ATCGAT | 1 cut(s) | 501 |
| BseDI | CCNNGG | 2 cut(s) | 698, 743 |
| BseGI | GGATG | 4 cut(s) | 121, 466, 634, 641 |
| BseJI | GATNNNNATC | 1 cut(s) | 143 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 345, 346, 457, 632, 771 |
| BseMI | GCAATG | 2 cut(s) | 750, 887 |
| BseMII | CTCAG | 3 cut(s) | 166, 225, 588 |
| BseNI | ACTGG | 1 cut(s) | 311 |
| BseXI | GCAGC | 1 cut(s) | 240 |
| Bsh1236I | CGCG | 2 cut(s) | 110, 814 |
| Bsh1285I | CGRYCG | 2 cut(s) | 688, 907 |
| BshFI | GGCC | 4 cut(s) | 107, 220, 289, 354 |
| BshVI | ATCGAT | 1 cut(s) | 501 |
| BsiEI | CGRYCG | 2 cut(s) | 688, 907 |
| BsiHKAI | GWGCWC | 7 cut(s) | 76, 123, 135, 163, 177, 310, 625 |
| BsiSI | CCGG | 1 cut(s) | 626 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 345, 346, 457, 632, 771 |
| BsmAI | GTCTC | 5 cut(s) | 322, 614, 797, 821, 888 |
| BsmBI | CGTCTC | 1 cut(s) | 614 |
| BsnI | GGCC | 4 cut(s) | 107, 220, 289, 354 |
| Bso31I | GGTCTC | 1 cut(s) | 322 |
| Bsp1286I | GDGCHC | 7 cut(s) | 76, 123, 135, 163, 177, 310, 625 |
| Bsp13I | TCCGGA | 1 cut(s) | 625 |
| Bsp143I | GATC | 6 cut(s) | 296, 433, 469, 616, 685, 904 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 234 |
| BspACI | CCGC | 4 cut(s) | 108, 652, 812, 836 |
| BspANI | GGCC | 4 cut(s) | 107, 220, 289, 354 |
| BspCNI | CTCAG | 3 cut(s) | 165, 226, 587 |
| BspDI | ATCGAT | 1 cut(s) | 501 |
| BspEI | TCCGGA | 1 cut(s) | 625 |
| BspFNI | CGCG | 2 cut(s) | 110, 814 |
| BspLI | GGNNCC | 1 cut(s) | 660 |
| BspQI | GCTCTTC | 2 cut(s) | 501, 762 |
| BspTNI | GGTCTC | 1 cut(s) | 322 |
| BsrBI | CCGCTC | 1 cut(s) | 652 |
| BsrDI | GCAATG | 2 cut(s) | 750, 887 |
| BsrI | ACTGG | 1 cut(s) | 311 |
| BssECI | CCNNGG | 2 cut(s) | 698, 743 |
| BssMI | GATC | 6 cut(s) | 296, 433, 469, 616, 685, 904 |
| BssSI | CACGAG | 1 cut(s) | 75 |
| BssT1I | CCWWGG | 1 cut(s) | 698 |
| Bst2BI | CACGAG | 1 cut(s) | 75 |
| Bst2UI | CCWGG | 2 cut(s) | 286, 772 |
| Bst4CI | ACNGT | 3 cut(s) | 374, 551, 919 |
| Bst6I | CTCTTC | 2 cut(s) | 501, 762 |
| BstC8I | GCNNGC | 2 cut(s) | 222, 231 |
| BstDEI | CTNAG | 3 cut(s) | 152, 234, 574 |
| BstF5I | GGATG | 4 cut(s) | 121, 466, 634, 641 |
| BstFNI | CGCG | 2 cut(s) | 110, 814 |
| BstH2I | RGCGCY | 1 cut(s) | 856 |
| BstHHI | GCGC | 2 cut(s) | 816, 855 |
| BstKTI | GATC | 6 cut(s) | 299, 436, 472, 619, 688, 907 |
| BstMAI | GTCTC | 5 cut(s) | 322, 614, 797, 821, 888 |
| BstMBI | GATC | 6 cut(s) | 296, 433, 469, 616, 685, 904 |
| BstMCI | CGRYCG | 2 cut(s) | 688, 907 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 226, 230, 235, 776, 852 |
| BstNI | CCWGG | 2 cut(s) | 286, 772 |
| BstNSI | RCATGY | 1 cut(s) | 274 |
| BstSCI | CCNGG | 2 cut(s) | 284, 770 |
| BstUI | CGCG | 2 cut(s) | 110, 814 |
| BstV1I | GCAGC | 1 cut(s) | 240 |
| BstV2I | GAAGAC | 1 cut(s) | 543 |
| Bsu15I | ATCGAT | 1 cut(s) | 501 |
| BsuRI | GGCC | 4 cut(s) | 107, 220, 289, 354 |
| BsuTUI | ATCGAT | 1 cut(s) | 501 |
| BtrI | CACGTC | 1 cut(s) | 608 |
| BtsCI | GGATG | 4 cut(s) | 121, 466, 634, 641 |
| BtsIMutI | CAGTG | 1 cut(s) | 318 |
| Cac8I | GCNNGC | 2 cut(s) | 222, 231 |
| CfoI | GCGC | 2 cut(s) | 816, 855 |
| Cfr13I | GGNCC | 5 cut(s) | 105, 182, 245, 353, 747 |
| ClaI | ATCGAT | 1 cut(s) | 501 |
| CseI | GACGC | 2 cut(s) | 99, 879 |
| Csp6I | GTAC | 1 cut(s) | 671 |
| CviAII | CATG | 4 cut(s) | 271, 291, 341, 819 |
| CviQI | GTAC | 1 cut(s) | 671 |
| DdeI | CTNAG | 3 cut(s) | 152, 234, 574 |
| DpnI | GATC | 6 cut(s) | 298, 435, 471, 618, 687, 906 |
| DpnII | GATC | 6 cut(s) | 296, 433, 469, 616, 685, 904 |
| DraIII | CACNNNGTG | 1 cut(s) | 350 |
| EaeI | YGGCCR | 1 cut(s) | 287 |
| Eam1104I | CTCTTC | 2 cut(s) | 501, 762 |
| EarI | CTCTTC | 2 cut(s) | 501, 762 |
| EciI | GGCGGA | 1 cut(s) | 825 |
| Ecl136II | GAGCTC | 4 cut(s) | 74, 121, 161, 175 |
| Eco130I | CCWWGG | 1 cut(s) | 698 |
| Eco24I | GRGCYC | 4 cut(s) | 76, 123, 163, 177 |
| Eco31I | GGTCTC | 1 cut(s) | 322 |
| Eco47I | GGWCC | 3 cut(s) | 182, 245, 747 |
| Eco53kI | GAGCTC | 4 cut(s) | 74, 121, 161, 175 |
| Eco57I | CTGAAG | 2 cut(s) | 438, 620 |
| EcoICRI | GAGCTC | 4 cut(s) | 74, 121, 161, 175 |
| EcoRII | CCWGG | 2 cut(s) | 284, 770 |
| EcoT14I | CCWWGG | 1 cut(s) | 698 |
| EcoT22I | ATGCAT | 1 cut(s) | 824 |
| EcoT38I | GRGCYC | 4 cut(s) | 76, 123, 163, 177 |
| ErhI | CCWWGG | 1 cut(s) | 698 |
| Esp3I | CGTCTC | 1 cut(s) | 614 |
| FaeI | CATG | 4 cut(s) | 274, 294, 344, 822 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 429, 461 |
| FatI | CATG | 4 cut(s) | 270, 290, 340, 818 |
| FbaI | TGATCA | 2 cut(s) | 433, 469 |
| Fnu4HI | GCNGC | 2 cut(s) | 108, 254 |
| FokI | GGATG | 4 cut(s) | 128, 473, 641, 648 |
| FriOI | GRGCYC | 4 cut(s) | 76, 123, 163, 177 |
| Fsp4HI | GCNGC | 2 cut(s) | 108, 254 |
| GlaI | GCGC | 2 cut(s) | 815, 854 |
| GluI | GCNGC | 2 cut(s) | 108, 254 |
| GsuI | CTGGAG | 1 cut(s) | 306 |
| HaeII | RGCGCY | 1 cut(s) | 856 |
| HaeIII | GGCC | 4 cut(s) | 107, 220, 289, 354 |
| HapII | CCGG | 1 cut(s) | 626 |
| HgaI | GACGC | 2 cut(s) | 99, 879 |
| HhaI | GCGC | 2 cut(s) | 816, 855 |
| Hin1II | CATG | 4 cut(s) | 274, 294, 344, 822 |
| Hin6I | GCGC | 2 cut(s) | 814, 853 |
| HinP1I | GCGC | 2 cut(s) | 814, 853 |
| HinfI | GANTC | 4 cut(s) | 27, 199, 262, 442 |
| HpaII | CCGG | 1 cut(s) | 626 |
| HphI | GGTGA | 1 cut(s) | 732 |
| Hpy188I | TCNGA | 5 cut(s) | 32, 115, 125, 182, 245 |
| Hpy188III | TCNNGA | 7 cut(s) | 43, 446, 598, 626, 676, 826, 867 |
| Hpy99I | CGWCG | 6 cut(s) | 10, 13, 16, 115, 173, 182 |
| HpyAV | CCTTC | 2 cut(s) | 195, 258 |
| HpyCH4III | ACNGT | 3 cut(s) | 374, 551, 919 |
| HpyCH4IV | ACGT | 1 cut(s) | 607 |
| HpyCH4V | TGCA | 6 cut(s) | 344, 779, 822, 846, 863, 911 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 226, 230, 235, 776, 852 |
| HpyF3I | CTNAG | 3 cut(s) | 152, 234, 574 |
| HpySE526I | ACGT | 1 cut(s) | 607 |
| Hsp92II | CATG | 4 cut(s) | 274, 294, 344, 822 |
| HspAI | GCGC | 2 cut(s) | 814, 853 |
| Kpn2I | TCCGGA | 1 cut(s) | 625 |
| Ksp22I | TGATCA | 2 cut(s) | 433, 469 |
| Kzo9I | GATC | 6 cut(s) | 296, 433, 469, 616, 685, 904 |
| LguI | GCTCTTC | 2 cut(s) | 501, 762 |
| LmnI | GCTCC | 4 cut(s) | 71, 387, 628, 649 |
| Lsp1109I | GCAGC | 1 cut(s) | 240 |
| LweI | GCATC | 4 cut(s) | 451, 831, 855, 872 |
| MaeII | ACGT | 1 cut(s) | 607 |
| MaeIII | GTNAC | 1 cut(s) | 266 |
| MalI | GATC | 6 cut(s) | 298, 435, 471, 618, 687, 906 |
| MbiI | CCGCTC | 1 cut(s) | 652 |
| MboI | GATC | 6 cut(s) | 296, 433, 469, 616, 685, 904 |
| MboII | GAAGA | 3 cut(s) | 518, 548, 749 |
| MhlI | GDGCHC | 7 cut(s) | 76, 123, 135, 163, 177, 310, 625 |
| MlsI | TGGCCA | 1 cut(s) | 289 |
| MluCI | AATT | 1 cut(s) | 62 |
| MluNI | TGGCCA | 1 cut(s) | 289 |
| MmeI | TCCRAC | 4 cut(s) | 49, 93, 160, 223 |
| MnlI | CCTC | 9 cut(s) | 449, 517, 535, 738, 798, 802, 850, 867, 891 |
| Mox20I | TGGCCA | 1 cut(s) | 289 |
| Mph1103I | ATGCAT | 1 cut(s) | 824 |
| MroI | TCCGGA | 1 cut(s) | 625 |
| MscI | TGGCCA | 1 cut(s) | 289 |
| MslI | CAYNNNNRTG | 2 cut(s) | 501, 516 |
| Msp20I | TGGCCA | 1 cut(s) | 289 |
| MspI | CCGG | 1 cut(s) | 626 |
| MspR9I | CCNGG | 2 cut(s) | 286, 772 |
| MvaI | CCWGG | 2 cut(s) | 286, 772 |
| MvnI | CGCG | 2 cut(s) | 110, 814 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 226, 230, 235, 776, 852 |
| NdeII | GATC | 6 cut(s) | 296, 433, 469, 616, 685, 904 |
| NlaIII | CATG | 4 cut(s) | 274, 294, 344, 822 |
| NlaIV | GGNNCC | 1 cut(s) | 660 |
| NsiI | ATGCAT | 1 cut(s) | 824 |
| NspI | RCATGY | 1 cut(s) | 274 |
| PciI | ACATGT | 1 cut(s) | 270 |
| PciSI | GCTCTTC | 2 cut(s) | 501, 762 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 11, 174 |
| PfeI | GAWTC | 4 cut(s) | 27, 199, 262, 442 |
| PkrI | GCNGC | 2 cut(s) | 109, 255 |
| Ple19I | CGATCG | 2 cut(s) | 688, 907 |
| PscI | ACATGT | 1 cut(s) | 270 |
| Psp124BI | GAGCTC | 4 cut(s) | 76, 123, 163, 177 |
| Psp6I | CCWGG | 2 cut(s) | 284, 770 |
| PspGI | CCWGG | 2 cut(s) | 284, 770 |
| PspN4I | GGNNCC | 1 cut(s) | 660 |
| PspPI | GGNCC | 5 cut(s) | 105, 182, 245, 353, 747 |
| PvuI | CGATCG | 2 cut(s) | 688, 907 |
| RsaI | GTAC | 1 cut(s) | 672 |
| RsaNI | GTAC | 1 cut(s) | 671 |
| RseI | CAYNNNNRTG | 2 cut(s) | 501, 516 |
| SacI | GAGCTC | 4 cut(s) | 76, 123, 163, 177 |
| SapI | GCTCTTC | 2 cut(s) | 501, 762 |
| SatI | GCNGC | 2 cut(s) | 108, 254 |
| Sau3AI | GATC | 6 cut(s) | 296, 433, 469, 616, 685, 904 |
| Sau96I | GGNCC | 5 cut(s) | 105, 182, 245, 353, 747 |
| ScrFI | CCNGG | 2 cut(s) | 286, 772 |
| SduI | GDGCHC | 7 cut(s) | 76, 123, 135, 163, 177, 310, 625 |
| SfaNI | GCATC | 4 cut(s) | 451, 831, 855, 872 |
| SinI | GGWCC | 3 cut(s) | 182, 245, 747 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 501, 516 |
| SmlI | CTYRAG | 2 cut(s) | 208, 257 |
| SmoI | CTYRAG | 2 cut(s) | 208, 257 |
| Sse9I | AATT | 1 cut(s) | 62 |
| SsiI | CCGC | 4 cut(s) | 108, 652, 812, 836 |
| SstI | GAGCTC | 4 cut(s) | 76, 123, 163, 177 |
| StyD4I | CCNGG | 2 cut(s) | 284, 770 |
| StyI | CCWWGG | 1 cut(s) | 698 |
| TaaI | ACNGT | 3 cut(s) | 374, 551, 919 |
| TaiI | ACGT | 1 cut(s) | 610 |
| TasI | AATT | 1 cut(s) | 62 |
| TauI | GCSGC | 1 cut(s) | 110 |
| TfiI | GAWTC | 4 cut(s) | 27, 199, 262, 442 |
| TscAI | CASTG | 1 cut(s) | 318 |
| TseI | GCWGC | 1 cut(s) | 253 |
| TspDTI | ATGAA | 6 cut(s) | 191, 266, 519, 549, 715, 876 |
| TspRI | CASTG | 1 cut(s) | 318 |
| VpaK11BI | GGWCC | 3 cut(s) | 182, 245, 747 |
| XceI | RCATGY | 1 cut(s) | 274 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 347 |
| Zsp2I | ATGCAT | 1 cut(s) | 824 |