ribonuclease H protein At1g65750-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 8 - 144 | 1.6e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 302 |
| AclWI | GGATC | 1 cut(s) | 357 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 222, 344, 418 |
| AjiI | CACGTC | 1 cut(s) | 62 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AluBI | AGCT | 1 cut(s) | 263 |
| AluI | AGCT | 1 cut(s) | 263 |
| Alw26I | GTCTC | 5 cut(s) | 110, 137, 182, 370, 399 |
| AlwI | GGATC | 1 cut(s) | 357 |
| Ama87I | CYCGRG | 2 cut(s) | 140, 179 |
| ApeKI | GCWGC | 1 cut(s) | 386 |
| AseI | ATTAAT | 1 cut(s) | 371 |
| AspA2I | CCTAGG | 1 cut(s) | 95 |
| AspLEI | GCGC | 1 cut(s) | 67 |
| AspS9I | GGNCC | 2 cut(s) | 16, 409 |
| AsuC2I | CCSGG | 2 cut(s) | 35, 207 |
| AsuII | TTCGAA | 1 cut(s) | 473 |
| AvaI | CYCGRG | 2 cut(s) | 140, 179 |
| AvaII | GGWCC | 2 cut(s) | 16, 409 |
| AvrII | CCTAGG | 1 cut(s) | 95 |
| BbvI | GCAGC | 1 cut(s) | 398 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BciVI | GTATCC | 1 cut(s) | 326 |
| BclI | TGATCA | 1 cut(s) | 78 |
| BcnI | CCSGG | 2 cut(s) | 35, 207 |
| BcoDI | GTCTC | 5 cut(s) | 110, 137, 182, 370, 399 |
| BfaI | CTAG | 1 cut(s) | 96 |
| BfuI | GTATCC | 1 cut(s) | 326 |
| BisI | GCNGC | 1 cut(s) | 387 |
| BlnI | CCTAGG | 1 cut(s) | 95 |
| BlsI | GCNGC | 1 cut(s) | 388 |
| Bme1390I | CCNGG | 3 cut(s) | 20, 35, 207 |
| Bme18I | GGWCC | 2 cut(s) | 16, 409 |
| BmeT110I | CYCGRG | 2 cut(s) | 140, 179 |
| BmgBI | CACGTC | 1 cut(s) | 62 |
| BmgT120I | GGNCC | 2 cut(s) | 16, 409 |
| BmiI | GGNNCC | 2 cut(s) | 17, 410 |
| BmrFI | CCNGG | 3 cut(s) | 20, 35, 207 |
| BmrI | ACTGGG | 1 cut(s) | 354 |
| BmsI | GCATC | 1 cut(s) | 478 |
| BmuI | ACTGGG | 1 cut(s) | 354 |
| BoxI | GACNNNNGTC | 1 cut(s) | 174 |
| Bpu14I | TTCGAA | 1 cut(s) | 473 |
| BpuEI | CTTGAG | 1 cut(s) | 114 |
| BpuMI | CCSGG | 2 cut(s) | 35, 207 |
| BsaJI | CCNNGG | 5 cut(s) | 34, 95, 206, 404, 441 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 222, 344, 418 |
| Bse1I | ACTGG | 3 cut(s) | 166, 325, 349 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseDI | CCNNGG | 5 cut(s) | 34, 95, 206, 404, 441 |
| BseGI | GGATG | 2 cut(s) | 231, 280 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 222, 344, 418 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 3 cut(s) | 166, 325, 349 |
| BseRI | GAGGAG | 1 cut(s) | 387 |
| BseXI | GCAGC | 1 cut(s) | 398 |
| BsiHKCI | CYCGRG | 2 cut(s) | 140, 179 |
| BsiSI | CCGG | 2 cut(s) | 34, 206 |
| BslFI | GGGAC | 2 cut(s) | 221, 434 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 222, 344, 418 |
| BsmAI | GTCTC | 5 cut(s) | 110, 137, 182, 370, 399 |
| BsmBI | CGTCTC | 1 cut(s) | 110 |
| BsmFI | GGGAC | 2 cut(s) | 221, 434 |
| BsoBI | CYCGRG | 2 cut(s) | 140, 179 |
| Bsp119I | TTCGAA | 1 cut(s) | 473 |
| Bsp143I | GATC | 2 cut(s) | 78, 349 |
| Bsp19I | CCATGG | 1 cut(s) | 441 |
| BspACI | CCGC | 1 cut(s) | 302 |
| BspCNI | CTCAG | 1 cut(s) | 272 |
| BspLI | GGNNCC | 2 cut(s) | 17, 410 |
| BspPI | GGATC | 1 cut(s) | 357 |
| BspT104I | TTCGAA | 1 cut(s) | 473 |
| BsrI | ACTGG | 3 cut(s) | 166, 325, 349 |
| BssECI | CCNNGG | 5 cut(s) | 34, 95, 206, 404, 441 |
| BssMI | GATC | 2 cut(s) | 78, 349 |
| BssT1I | CCWWGG | 2 cut(s) | 95, 441 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst6I | CTCTTC | 1 cut(s) | 405 |
| BstBI | TTCGAA | 1 cut(s) | 473 |
| BstC8I | GCNNGC | 1 cut(s) | 493 |
| BstDEI | CTNAG | 1 cut(s) | 259 |
| BstDSI | CCRYGG | 2 cut(s) | 404, 441 |
| BstF5I | GGATG | 2 cut(s) | 231, 280 |
| BstHHI | GCGC | 1 cut(s) | 67 |
| BstKTI | GATC | 2 cut(s) | 81, 352 |
| BstMAI | GTCTC | 5 cut(s) | 110, 137, 182, 370, 399 |
| BstMBI | GATC | 2 cut(s) | 78, 349 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstNSI | RCATGY | 1 cut(s) | 272 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 174 |
| BstSCI | CCNGG | 3 cut(s) | 18, 33, 205 |
| BstV1I | GCAGC | 1 cut(s) | 398 |
| BsuI | GTATCC | 1 cut(s) | 326 |
| BtgI | CCRYGG | 2 cut(s) | 404, 441 |
| BtgZI | GCGATG | 1 cut(s) | 210 |
| BtrI | CACGTC | 1 cut(s) | 62 |
| BtsCI | GGATG | 2 cut(s) | 231, 280 |
| Cac8I | GCNNGC | 1 cut(s) | 493 |
| CfoI | GCGC | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 2 cut(s) | 16, 409 |
| CseI | GACGC | 1 cut(s) | 127 |
| CviAII | CATG | 2 cut(s) | 269, 442 |
| CviJI | RGCY | 6 cut(s) | 9, 23, 51, 94, 263, 495 |
| CviKI_1 | RGCY | 6 cut(s) | 9, 23, 51, 94, 263, 495 |
| DdeI | CTNAG | 1 cut(s) | 259 |
| DpnI | GATC | 2 cut(s) | 80, 351 |
| DpnII | GATC | 2 cut(s) | 78, 349 |
| Eam1104I | CTCTTC | 1 cut(s) | 405 |
| EarI | CTCTTC | 1 cut(s) | 405 |
| Eco130I | CCWWGG | 2 cut(s) | 95, 441 |
| Eco47I | GGWCC | 2 cut(s) | 16, 409 |
| Eco88I | CYCGRG | 2 cut(s) | 140, 179 |
| EcoO109I | RGGNCCY | 2 cut(s) | 16, 409 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT14I | CCWWGG | 2 cut(s) | 95, 441 |
| ErhI | CCWWGG | 2 cut(s) | 95, 441 |
| Esp3I | CGTCTC | 1 cut(s) | 110 |
| FaeI | CATG | 2 cut(s) | 272, 445 |
| FaiI | YATR | 7 cut(s) | 151, 246, 248, 270, 330, 443, 485 |
| FaqI | GGGAC | 2 cut(s) | 221, 434 |
| FatI | CATG | 2 cut(s) | 268, 441 |
| FbaI | TGATCA | 1 cut(s) | 78 |
| Fnu4HI | GCNGC | 1 cut(s) | 387 |
| FokI | GGATG | 2 cut(s) | 238, 287 |
| Fsp4HI | GCNGC | 1 cut(s) | 387 |
| FspBI | CTAG | 1 cut(s) | 96 |
| GlaI | GCGC | 1 cut(s) | 66 |
| GluI | GCNGC | 1 cut(s) | 387 |
| HapII | CCGG | 2 cut(s) | 34, 206 |
| HgaI | GACGC | 1 cut(s) | 127 |
| HhaI | GCGC | 1 cut(s) | 67 |
| Hin1II | CATG | 2 cut(s) | 272, 445 |
| Hin6I | GCGC | 1 cut(s) | 65 |
| HinP1I | GCGC | 1 cut(s) | 65 |
| HincII | GTYRAC | 1 cut(s) | 318 |
| HindII | GTYRAC | 1 cut(s) | 318 |
| HinfI | GANTC | 1 cut(s) | 200 |
| HpaII | CCGG | 2 cut(s) | 34, 206 |
| Hpy166II | GTNNAC | 1 cut(s) | 318 |
| Hpy188I | TCNGA | 1 cut(s) | 115 |
| Hpy188III | TCNNGA | 4 cut(s) | 82, 142, 181, 412 |
| Hpy8I | GTNNAC | 1 cut(s) | 318 |
| Hpy99I | CGWCG | 1 cut(s) | 63 |
| HpyAV | CCTTC | 2 cut(s) | 20, 178 |
| HpyCH4IV | ACGT | 1 cut(s) | 61 |
| HpyCH4V | TGCA | 2 cut(s) | 244, 491 |
| HpyF3I | CTNAG | 1 cut(s) | 259 |
| HpySE526I | ACGT | 1 cut(s) | 61 |
| Hsp92II | CATG | 2 cut(s) | 272, 445 |
| HspAI | GCGC | 1 cut(s) | 65 |
| Ksp22I | TGATCA | 1 cut(s) | 78 |
| Kzo9I | GATC | 2 cut(s) | 78, 349 |
| Lsp1109I | GCAGC | 1 cut(s) | 398 |
| LweI | GCATC | 1 cut(s) | 478 |
| MaeI | CTAG | 1 cut(s) | 96 |
| MaeII | ACGT | 1 cut(s) | 61 |
| MalI | GATC | 2 cut(s) | 80, 351 |
| MboI | GATC | 2 cut(s) | 78, 349 |
| MboII | GAAGA | 5 cut(s) | 200, 317, 392, 427, 487 |
| MfeI | CAATTG | 2 cut(s) | 172, 380 |
| MluCI | AATT | 4 cut(s) | 28, 172, 368, 380 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MnlI | CCTC | 5 cut(s) | 227, 306, 348, 408, 439 |
| MseI | TTAA | 2 cut(s) | 371, 426 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspA1I | CMGCKG | 1 cut(s) | 302 |
| MspI | CCGG | 2 cut(s) | 34, 206 |
| MspR9I | CCNGG | 3 cut(s) | 20, 35, 207 |
| MunI | CAATTG | 2 cut(s) | 172, 380 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| NciI | CCSGG | 2 cut(s) | 35, 207 |
| NcoI | CCATGG | 1 cut(s) | 441 |
| NdeII | GATC | 2 cut(s) | 78, 349 |
| NlaIII | CATG | 2 cut(s) | 272, 445 |
| NlaIV | GGNNCC | 2 cut(s) | 17, 410 |
| NmeAIII | GCCGAG | 1 cut(s) | 244 |
| NspI | RCATGY | 1 cut(s) | 272 |
| NspV | TTCGAA | 1 cut(s) | 473 |
| PaeR7I | CTCGAG | 1 cut(s) | 140 |
| PkrI | GCNGC | 1 cut(s) | 388 |
| PleI | GAGTC | 1 cut(s) | 208 |
| PpsI | GAGTC | 1 cut(s) | 208 |
| PpuMI | RGGWCCY | 2 cut(s) | 16, 409 |
| PshAI | GACNNNNGTC | 1 cut(s) | 174 |
| PshBI | ATTAAT | 1 cut(s) | 371 |
| Psp5II | RGGWCCY | 2 cut(s) | 16, 409 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 2 cut(s) | 17, 410 |
| PspPI | GGNCC | 2 cut(s) | 16, 409 |
| PspPPI | RGGWCCY | 2 cut(s) | 16, 409 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SaqAI | TTAA | 2 cut(s) | 371, 426 |
| SatI | GCNGC | 1 cut(s) | 387 |
| Sau3AI | GATC | 2 cut(s) | 78, 349 |
| Sau96I | GGNCC | 2 cut(s) | 16, 409 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 3 cut(s) | 20, 35, 207 |
| SetI | ASST | 4 cut(s) | 64, 265, 294, 317 |
| SfaNI | GCATC | 1 cut(s) | 478 |
| Sfr274I | CTCGAG | 1 cut(s) | 140 |
| SfuI | TTCGAA | 1 cut(s) | 473 |
| SinI | GGWCC | 2 cut(s) | 16, 409 |
| SlaI | CTCGAG | 1 cut(s) | 140 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 2 cut(s) | 129, 140 |
| SmoI | CTYRAG | 2 cut(s) | 129, 140 |
| Sse9I | AATT | 4 cut(s) | 28, 172, 368, 380 |
| SsiI | CCGC | 1 cut(s) | 302 |
| SspMI | CTAG | 1 cut(s) | 96 |
| StyD4I | CCNGG | 3 cut(s) | 18, 33, 205 |
| StyI | CCWWGG | 2 cut(s) | 95, 441 |
| TaiI | ACGT | 1 cut(s) | 64 |
| TaqI | TCGA | 2 cut(s) | 141, 473 |
| TasI | AATT | 4 cut(s) | 28, 172, 368, 380 |
| Tru1I | TTAA | 2 cut(s) | 371, 426 |
| Tru9I | TTAA | 2 cut(s) | 371, 426 |
| TseI | GCWGC | 1 cut(s) | 386 |
| TspDTI | ATGAA | 2 cut(s) | 242, 444 |
| TspGWI | ACGGA | 1 cut(s) | 393 |
| VpaK11BI | GGWCC | 2 cut(s) | 16, 409 |
| VspI | ATTAAT | 1 cut(s) | 371 |
| XceI | RCATGY | 1 cut(s) | 272 |
| XhoI | CTCGAG | 1 cut(s) | 140 |
| XmaJI | CCTAGG | 1 cut(s) | 95 |
| XspI | CTAG | 1 cut(s) | 96 |