Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 198 |
| AccII | CGCG | 1 cut(s) | 348 |
| AfaI | GTAC | 1 cut(s) | 30 |
| AfeI | AGCGCT | 1 cut(s) | 63 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 198, 201, 395 |
| AgsI | TTSAA | 3 cut(s) | 16, 188, 329 |
| AhlI | ACTAGT | 1 cut(s) | 292 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 324, 356 |
| AluBI | AGCT | 2 cut(s) | 448, 493 |
| AluI | AGCT | 2 cut(s) | 448, 493 |
| Alw21I | GWGCWC | 2 cut(s) | 444, 495 |
| Aor51HI | AGCGCT | 1 cut(s) | 63 |
| AoxI | GGCC | 3 cut(s) | 50, 276, 314 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| AspLEI | GCGC | 2 cut(s) | 64, 348 |
| AsuC2I | CCSGG | 1 cut(s) | 179 |
| AsuHPI | GGTGA | 1 cut(s) | 223 |
| AsuII | TTCGAA | 1 cut(s) | 85 |
| BanII | GRGCYC | 1 cut(s) | 495 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 12, 44, 124, 156 |
| BbsI | GAAGAC | 2 cut(s) | 311, 357 |
| Bbv12I | GWGCWC | 2 cut(s) | 444, 495 |
| BbvI | GCAGC | 1 cut(s) | 55 |
| BccI | CCATC | 1 cut(s) | 330 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 431, 465 |
| BcnI | CCSGG | 1 cut(s) | 179 |
| BcuI | ACTAGT | 1 cut(s) | 292 |
| BfaI | CTAG | 1 cut(s) | 293 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 179 |
| BmrFI | CCNGG | 1 cut(s) | 179 |
| BmsI | GCATC | 2 cut(s) | 418, 469 |
| BpiI | GAAGAC | 2 cut(s) | 311, 357 |
| BpmI | CTGGAG | 1 cut(s) | 319 |
| Bpu10I | CCTNAGC | 1 cut(s) | 359 |
| Bpu14I | TTCGAA | 1 cut(s) | 85 |
| BpuMI | CCSGG | 1 cut(s) | 179 |
| Bsa29I | ATCGAT | 1 cut(s) | 154 |
| BsaJI | CCNNGG | 1 cut(s) | 178 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 193, 223 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 198, 201, 395 |
| Bse1I | ACTGG | 1 cut(s) | 400 |
| BseCI | ATCGAT | 1 cut(s) | 154 |
| BseDI | CCNNGG | 1 cut(s) | 178 |
| BseGI | GGATG | 1 cut(s) | 341 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 198, 201, 395 |
| BseMII | CTCAG | 7 cut(s) | 113, 124, 237, 250, 350, 480, 555 |
| BseNI | ACTGG | 1 cut(s) | 400 |
| BseRI | GAGGAG | 1 cut(s) | 572 |
| BseXI | GCAGC | 1 cut(s) | 55 |
| Bsh1236I | CGCG | 1 cut(s) | 348 |
| BshFI | GGCC | 3 cut(s) | 52, 278, 316 |
| BshVI | ATCGAT | 1 cut(s) | 154 |
| BsiHKAI | GWGCWC | 2 cut(s) | 444, 495 |
| BsiSI | CCGG | 1 cut(s) | 178 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 198, 201, 395 |
| BsnI | GGCC | 3 cut(s) | 52, 278, 316 |
| Bsp119I | TTCGAA | 1 cut(s) | 85 |
| Bsp1286I | GDGCHC | 2 cut(s) | 444, 495 |
| BspANI | GGCC | 3 cut(s) | 52, 278, 316 |
| BspCNI | CTCAG | 7 cut(s) | 112, 123, 238, 249, 351, 481, 554 |
| BspDI | ATCGAT | 1 cut(s) | 154 |
| BspFNI | CGCG | 1 cut(s) | 348 |
| BspT104I | TTCGAA | 1 cut(s) | 85 |
| BsrI | ACTGG | 1 cut(s) | 400 |
| BssECI | CCNNGG | 1 cut(s) | 178 |
| BstBI | TTCGAA | 1 cut(s) | 85 |
| BstC8I | GCNNGC | 1 cut(s) | 66 |
| BstDEI | CTNAG | 7 cut(s) | 99, 110, 236, 246, 359, 489, 541 |
| BstF5I | GGATG | 1 cut(s) | 341 |
| BstFNI | CGCG | 1 cut(s) | 348 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 2 cut(s) | 64, 348 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 68, 354 |
| BstNSI | RCATGY | 1 cut(s) | 578 |
| BstSCI | CCNGG | 1 cut(s) | 177 |
| BstUI | CGCG | 1 cut(s) | 348 |
| BstV1I | GCAGC | 1 cut(s) | 55 |
| BstV2I | GAAGAC | 2 cut(s) | 311, 357 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 64, 297 |
| Bsu15I | ATCGAT | 1 cut(s) | 154 |
| BsuRI | GGCC | 3 cut(s) | 52, 278, 316 |
| BsuTUI | ATCGAT | 1 cut(s) | 154 |
| BtgZI | GCGATG | 2 cut(s) | 86, 446 |
| BtsCI | GGATG | 1 cut(s) | 341 |
| BtsIMutI | CAGTG | 3 cut(s) | 107, 118, 465 |
| Cac8I | GCNNGC | 1 cut(s) | 66 |
| CfoI | GCGC | 2 cut(s) | 64, 348 |
| ClaI | ATCGAT | 1 cut(s) | 154 |
| Csp6I | GTAC | 1 cut(s) | 29 |
| CviAII | CATG | 3 cut(s) | 25, 456, 575 |
| CviJI | RGCY | 9 cut(s) | 52, 68, 123, 183, 278, 316, 383, 448, 493 |
| CviKI_1 | RGCY | 9 cut(s) | 52, 68, 123, 183, 278, 316, 383, 448, 493 |
| CviQI | GTAC | 1 cut(s) | 29 |
| DdeI | CTNAG | 7 cut(s) | 99, 110, 236, 246, 359, 489, 541 |
| Ecl136II | GAGCTC | 1 cut(s) | 493 |
| Eco147I | AGGCCT | 1 cut(s) | 52 |
| Eco24I | GRGCYC | 1 cut(s) | 495 |
| Eco47III | AGCGCT | 1 cut(s) | 63 |
| Eco53kI | GAGCTC | 1 cut(s) | 493 |
| EcoICRI | GAGCTC | 1 cut(s) | 493 |
| EcoT38I | GRGCYC | 1 cut(s) | 495 |
| FaeI | CATG | 3 cut(s) | 28, 459, 578 |
| FaiI | YATR | 8 cut(s) | 26, 119, 159, 219, 457, 553, 555, 576 |
| FatI | CATG | 3 cut(s) | 24, 455, 574 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 1 cut(s) | 348 |
| FriOI | GRGCYC | 1 cut(s) | 495 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 1 cut(s) | 293 |
| GlaI | GCGC | 2 cut(s) | 63, 347 |
| GluI | GCNGC | 1 cut(s) | 69 |
| GsuI | CTGGAG | 1 cut(s) | 319 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 3 cut(s) | 52, 278, 316 |
| HapII | CCGG | 1 cut(s) | 178 |
| HhaI | GCGC | 2 cut(s) | 64, 348 |
| Hin1II | CATG | 3 cut(s) | 28, 459, 578 |
| Hin6I | GCGC | 2 cut(s) | 62, 346 |
| HinP1I | GCGC | 2 cut(s) | 62, 346 |
| HindIII | AAGCTT | 1 cut(s) | 446 |
| HinfI | GANTC | 4 cut(s) | 97, 108, 248, 502 |
| HpaII | CCGG | 1 cut(s) | 178 |
| HphI | GGTGA | 1 cut(s) | 223 |
| Hpy166II | GTNNAC | 1 cut(s) | 107 |
| Hpy188I | TCNGA | 2 cut(s) | 247, 253 |
| Hpy188III | TCNNGA | 4 cut(s) | 35, 45, 298, 506 |
| Hpy8I | GTNNAC | 1 cut(s) | 107 |
| HpyAV | CCTTC | 3 cut(s) | 42, 252, 326 |
| HpyCH4IV | ACGT | 1 cut(s) | 565 |
| HpyCH4V | TGCA | 3 cut(s) | 409, 455, 574 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 68, 354 |
| HpyF3I | CTNAG | 7 cut(s) | 99, 110, 236, 246, 359, 489, 541 |
| HpySE526I | ACGT | 1 cut(s) | 565 |
| Hsp92II | CATG | 3 cut(s) | 28, 459, 578 |
| HspAI | GCGC | 2 cut(s) | 62, 346 |
| LmnI | GCTCC | 3 cut(s) | 439, 498, 559 |
| Lsp1109I | GCAGC | 1 cut(s) | 55 |
| LweI | GCATC | 2 cut(s) | 418, 469 |
| MaeI | CTAG | 1 cut(s) | 293 |
| MaeII | ACGT | 1 cut(s) | 565 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MboII | GAAGA | 4 cut(s) | 99, 316, 341, 362 |
| MfeI | CAATTG | 1 cut(s) | 569 |
| MhlI | GDGCHC | 2 cut(s) | 444, 495 |
| MluCI | AATT | 2 cut(s) | 414, 569 |
| MlyI | GAGTC | 3 cut(s) | 91, 102, 257 |
| MmeI | TCCRAC | 3 cut(s) | 109, 417, 571 |
| MnlI | CCTC | 6 cut(s) | 63, 195, 245, 268, 294, 550 |
| MseI | TTAA | 3 cut(s) | 369, 423, 474 |
| MspI | CCGG | 1 cut(s) | 178 |
| MspR9I | CCNGG | 1 cut(s) | 179 |
| MunI | CAATTG | 1 cut(s) | 569 |
| MvnI | CGCG | 1 cut(s) | 348 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 68, 354 |
| NciI | CCSGG | 1 cut(s) | 179 |
| NlaIII | CATG | 3 cut(s) | 28, 459, 578 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| NspI | RCATGY | 1 cut(s) | 578 |
| NspV | TTCGAA | 1 cut(s) | 85 |
| PceI | AGGCCT | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 502 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 198 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 3 cut(s) | 91, 102, 256 |
| PpsI | GAGTC | 3 cut(s) | 91, 102, 256 |
| Psp124BI | GAGCTC | 1 cut(s) | 495 |
| RsaI | GTAC | 1 cut(s) | 30 |
| RsaNI | GTAC | 1 cut(s) | 29 |
| SacI | GAGCTC | 1 cut(s) | 495 |
| SaqAI | TTAA | 3 cut(s) | 369, 423, 474 |
| SatI | GCNGC | 1 cut(s) | 69 |
| SchI | GAGTC | 3 cut(s) | 91, 102, 257 |
| ScrFI | CCNGG | 1 cut(s) | 179 |
| SduI | GDGCHC | 2 cut(s) | 444, 495 |
| SetI | ASST | 3 cut(s) | 450, 495, 568 |
| SfaNI | GCATC | 2 cut(s) | 418, 469 |
| SfuI | TTCGAA | 1 cut(s) | 85 |
| SpeI | ACTAGT | 1 cut(s) | 292 |
| Sse9I | AATT | 2 cut(s) | 414, 569 |
| SseBI | AGGCCT | 1 cut(s) | 52 |
| SspMI | CTAG | 1 cut(s) | 293 |
| SstI | GAGCTC | 1 cut(s) | 495 |
| StuI | AGGCCT | 1 cut(s) | 52 |
| StyD4I | CCNGG | 1 cut(s) | 177 |
| TaiI | ACGT | 1 cut(s) | 568 |
| TaqI | TCGA | 2 cut(s) | 85, 154 |
| TasI | AATT | 2 cut(s) | 414, 569 |
| TfiI | GAWTC | 1 cut(s) | 502 |
| Tru1I | TTAA | 3 cut(s) | 369, 423, 474 |
| Tru9I | TTAA | 3 cut(s) | 369, 423, 474 |
| TscAI | CASTG | 3 cut(s) | 107, 118, 472 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| TseI | GCWGC | 1 cut(s) | 68 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 1 cut(s) | 542 |
| TspGWI | ACGGA | 2 cut(s) | 252, 485 |
| TspRI | CASTG | 3 cut(s) | 107, 118, 472 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 198 |
| XceI | RCATGY | 1 cut(s) | 578 |
| XspI | CTAG | 1 cut(s) | 293 |