ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 956 |
| AciI | CCGC | 7 cut(s) | 56, 198, 581, 691, 785, 848, 989 |
| AclI | AACGTT | 1 cut(s) | 940 |
| AclWI | GGATC | 1 cut(s) | 340 |
| AcoI | YGGCCR | 2 cut(s) | 97, 643 |
| AcuI | CTGAAG | 1 cut(s) | 461 |
| AcvI | CACGTG | 1 cut(s) | 820 |
| AdeI | CACNNNGTG | 1 cut(s) | 356 |
| AfaI | GTAC | 5 cut(s) | 165, 262, 457, 707, 1054 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 310, 483, 676 |
| AflII | CTTAAG | 1 cut(s) | 190 |
| AflIII | ACRYGT | 1 cut(s) | 176 |
| AgeI | ACCGGT | 1 cut(s) | 257 |
| AgsI | TTSAA | 5 cut(s) | 242, 688, 775, 917, 1021 |
| AjnI | CCWGG | 2 cut(s) | 51, 303 |
| AluBI | AGCT | 2 cut(s) | 37, 183 |
| AluI | AGCT | 2 cut(s) | 37, 183 |
| Alw26I | GTCTC | 2 cut(s) | 208, 243 |
| AlwI | GGATC | 1 cut(s) | 340 |
| AoxI | GGCC | 3 cut(s) | 97, 643, 870 |
| ApeKI | GCWGC | 2 cut(s) | 977, 1067 |
| AsiGI | ACCGGT | 1 cut(s) | 257 |
| AspA2I | CCTAGG | 1 cut(s) | 269 |
| AspS9I | GGNCC | 2 cut(s) | 716, 870 |
| AsuC2I | CCSGG | 1 cut(s) | 478 |
| AsuHPI | GGTGA | 3 cut(s) | 239, 472, 634 |
| AsuII | TTCGAA | 1 cut(s) | 6 |
| AvaII | GGWCC | 1 cut(s) | 716 |
| AvrII | CCTAGG | 1 cut(s) | 269 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 689, 722 |
| BalI | TGGCCA | 2 cut(s) | 99, 645 |
| BauI | CACGAG | 1 cut(s) | 673 |
| BbrPI | CACGTG | 1 cut(s) | 820 |
| BbsI | GAAGAC | 1 cut(s) | 907 |
| BbvI | GCAGC | 2 cut(s) | 989, 1054 |
| BccI | CCATC | 5 cut(s) | 89, 316, 475, 605, 989 |
| BciT130I | CCWGG | 2 cut(s) | 53, 305 |
| BclI | TGATCA | 1 cut(s) | 838 |
| BcnI | CCSGG | 1 cut(s) | 478 |
| BcoDI | GTCTC | 2 cut(s) | 208, 243 |
| BfaI | CTAG | 3 cut(s) | 270, 471, 1084 |
| BfrI | CTTAAG | 1 cut(s) | 190 |
| BisI | GCNGC | 3 cut(s) | 786, 978, 1068 |
| BlnI | CCTAGG | 1 cut(s) | 269 |
| BlpI | GCTNAGC | 1 cut(s) | 117 |
| BlsI | GCNGC | 3 cut(s) | 787, 979, 1069 |
| Bme1390I | CCNGG | 3 cut(s) | 53, 305, 478 |
| Bme18I | GGWCC | 1 cut(s) | 716 |
| BmgT120I | GGNCC | 2 cut(s) | 716, 870 |
| BmiI | GGNNCC | 1 cut(s) | 871 |
| BmrFI | CCNGG | 3 cut(s) | 53, 305, 478 |
| BmrI | ACTGGG | 2 cut(s) | 327, 1070 |
| BmsI | GCATC | 2 cut(s) | 562, 964 |
| BmuI | ACTGGG | 2 cut(s) | 327, 1070 |
| BpiI | GAAGAC | 1 cut(s) | 907 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 117 |
| Bpu14I | TTCGAA | 1 cut(s) | 6 |
| BpuEI | CTTGAG | 2 cut(s) | 123, 770 |
| BpuMI | CCSGG | 1 cut(s) | 478 |
| Bsa29I | ATCGAT | 1 cut(s) | 1079 |
| BsaAI | YACGTR | 1 cut(s) | 820 |
| BsaJI | CCNNGG | 4 cut(s) | 100, 222, 269, 303 |
| BsaWI | WCCGGW | 2 cut(s) | 257, 509 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 310, 483, 676 |
| Bse118I | RCCGGY | 2 cut(s) | 257, 872 |
| Bse1I | ACTGG | 3 cut(s) | 167, 322, 1065 |
| BseBI | CCWGG | 2 cut(s) | 53, 305 |
| BseCI | ATCGAT | 1 cut(s) | 1079 |
| BseDI | CCNNGG | 4 cut(s) | 100, 222, 269, 303 |
| BseGI | GGATG | 6 cut(s) | 79, 100, 327, 486, 568, 616 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 310, 483, 676 |
| BseMII | CTCAG | 2 cut(s) | 108, 219 |
| BseNI | ACTGG | 3 cut(s) | 167, 322, 1065 |
| BseXI | GCAGC | 2 cut(s) | 989, 1054 |
| BshFI | GGCC | 3 cut(s) | 99, 645, 872 |
| BshTI | ACCGGT | 1 cut(s) | 257 |
| BshVI | ATCGAT | 1 cut(s) | 1079 |
| BsiSI | CCGG | 4 cut(s) | 258, 477, 510, 873 |
| BslFI | GGGAC | 2 cut(s) | 204, 499 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 310, 483, 676 |
| BsmAI | GTCTC | 2 cut(s) | 208, 243 |
| BsmFI | GGGAC | 2 cut(s) | 204, 499 |
| BsmI | GAATGC | 1 cut(s) | 304 |
| BsnI | GGCC | 3 cut(s) | 99, 645, 872 |
| Bsp119I | TTCGAA | 1 cut(s) | 6 |
| Bsp143I | GATC | 3 cut(s) | 332, 838, 1080 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 117 |
| Bsp19I | CCATGG | 1 cut(s) | 222 |
| BspACI | CCGC | 7 cut(s) | 56, 198, 581, 691, 785, 848, 989 |
| BspANI | GGCC | 3 cut(s) | 99, 645, 872 |
| BspCNI | CTCAG | 2 cut(s) | 109, 218 |
| BspDI | ATCGAT | 1 cut(s) | 1079 |
| BspLI | GGNNCC | 1 cut(s) | 871 |
| BspPI | GGATC | 1 cut(s) | 340 |
| BspT104I | TTCGAA | 1 cut(s) | 6 |
| BspTI | CTTAAG | 1 cut(s) | 190 |
| BsrFI | RCCGGY | 2 cut(s) | 257, 872 |
| BsrI | ACTGG | 3 cut(s) | 167, 322, 1065 |
| BssAI | RCCGGY | 2 cut(s) | 257, 872 |
| BssECI | CCNNGG | 4 cut(s) | 100, 222, 269, 303 |
| BssMI | GATC | 3 cut(s) | 332, 838, 1080 |
| BssSI | CACGAG | 1 cut(s) | 673 |
| BssT1I | CCWWGG | 3 cut(s) | 100, 222, 269 |
| Bst2BI | CACGAG | 1 cut(s) | 673 |
| Bst2UI | CCWGG | 2 cut(s) | 53, 305 |
| Bst4CI | ACNGT | 4 cut(s) | 460, 559, 723, 906 |
| BstAFI | CTTAAG | 1 cut(s) | 190 |
| BstBAI | YACGTR | 1 cut(s) | 820 |
| BstBI | TTCGAA | 1 cut(s) | 6 |
| BstC8I | GCNNGC | 2 cut(s) | 384, 414 |
| BstDEI | CTNAG | 3 cut(s) | 117, 205, 353 |
| BstDSI | CCRYGG | 1 cut(s) | 222 |
| BstF5I | GGATG | 6 cut(s) | 79, 100, 327, 486, 568, 616 |
| BstKTI | GATC | 3 cut(s) | 335, 841, 1083 |
| BstMAI | GTCTC | 2 cut(s) | 208, 243 |
| BstMBI | GATC | 3 cut(s) | 332, 838, 1080 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 105, 791, 986 |
| BstNI | CCWGG | 2 cut(s) | 53, 305 |
| BstNSI | RCATGY | 1 cut(s) | 180 |
| BstSCI | CCNGG | 3 cut(s) | 51, 303, 476 |
| BstV1I | GCAGC | 2 cut(s) | 989, 1054 |
| BstV2I | GAAGAC | 1 cut(s) | 907 |
| Bsu15I | ATCGAT | 1 cut(s) | 1079 |
| BsuRI | GGCC | 3 cut(s) | 99, 645, 872 |
| BsuTUI | ATCGAT | 1 cut(s) | 1079 |
| BtgI | CCRYGG | 1 cut(s) | 222 |
| BtsCI | GGATG | 6 cut(s) | 79, 100, 327, 486, 568, 616 |
| BtsIMutI | CAGTG | 3 cut(s) | 174, 213, 719 |
| Cac8I | GCNNGC | 2 cut(s) | 384, 414 |
| Cfr10I | RCCGGY | 2 cut(s) | 257, 872 |
| Cfr13I | GGNCC | 2 cut(s) | 716, 870 |
| ClaI | ATCGAT | 1 cut(s) | 1079 |
| Csp6I | GTAC | 5 cut(s) | 164, 261, 456, 706, 1053 |
| CspAI | ACCGGT | 1 cut(s) | 257 |
| CviAII | CATG | 6 cut(s) | 17, 177, 223, 607, 729, 809 |
| CviQI | GTAC | 5 cut(s) | 164, 261, 456, 706, 1053 |
| DdeI | CTNAG | 3 cut(s) | 117, 205, 353 |
| DpnI | GATC | 3 cut(s) | 334, 840, 1082 |
| DpnII | GATC | 3 cut(s) | 332, 838, 1080 |
| DraIII | CACNNNGTG | 1 cut(s) | 356 |
| EaeI | YGGCCR | 2 cut(s) | 97, 643 |
| EciI | GGCGGA | 2 cut(s) | 71, 1004 |
| Eco130I | CCWWGG | 3 cut(s) | 100, 222, 269 |
| Eco47I | GGWCC | 1 cut(s) | 716 |
| Eco57I | CTGAAG | 1 cut(s) | 461 |
| Eco72I | CACGTG | 1 cut(s) | 820 |
| EcoRII | CCWGG | 2 cut(s) | 51, 303 |
| EcoT14I | CCWWGG | 3 cut(s) | 100, 222, 269 |
| ErhI | CCWWGG | 3 cut(s) | 100, 222, 269 |
| FaeI | CATG | 6 cut(s) | 20, 180, 226, 610, 732, 812 |
| FaqI | GGGAC | 2 cut(s) | 204, 499 |
| FatI | CATG | 6 cut(s) | 16, 176, 222, 606, 728, 808 |
| FauI | CCCGC | 1 cut(s) | 574 |
| FbaI | TGATCA | 1 cut(s) | 838 |
| Fnu4HI | GCNGC | 3 cut(s) | 786, 978, 1068 |
| FokI | GGATG | 6 cut(s) | 86, 107, 334, 493, 575, 623 |
| Fsp4HI | GCNGC | 3 cut(s) | 786, 978, 1068 |
| FspBI | CTAG | 3 cut(s) | 270, 471, 1084 |
| GluI | GCNGC | 3 cut(s) | 786, 978, 1068 |
| HaeIII | GGCC | 3 cut(s) | 99, 645, 872 |
| HapII | CCGG | 4 cut(s) | 258, 477, 510, 873 |
| Hin1II | CATG | 6 cut(s) | 20, 180, 226, 610, 732, 812 |
| HinfI | GANTC | 4 cut(s) | 126, 136, 548, 921 |
| HpaII | CCGG | 4 cut(s) | 258, 477, 510, 873 |
| HphI | GGTGA | 3 cut(s) | 239, 472, 634 |
| Hpy166II | GTNNAC | 1 cut(s) | 726 |
| Hpy188I | TCNGA | 1 cut(s) | 429 |
| Hpy188III | TCNNGA | 2 cut(s) | 140, 1021 |
| Hpy8I | GTNNAC | 1 cut(s) | 726 |
| HpyAV | CCTTC | 3 cut(s) | 85, 538, 911 |
| HpyCH4III | ACNGT | 4 cut(s) | 460, 559, 723, 906 |
| HpyCH4IV | ACGT | 5 cut(s) | 28, 162, 231, 819, 940 |
| HpyCH4V | TGCA | 6 cut(s) | 375, 575, 808, 833, 977, 1011 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 105, 791, 986 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 205, 353 |
| HpySE526I | ACGT | 5 cut(s) | 28, 162, 231, 819, 940 |
| Hsp92II | CATG | 6 cut(s) | 20, 180, 226, 610, 732, 812 |
| Ksp22I | TGATCA | 1 cut(s) | 838 |
| Kzo9I | GATC | 3 cut(s) | 332, 838, 1080 |
| LmnI | GCTCC | 1 cut(s) | 105 |
| Lsp1109I | GCAGC | 2 cut(s) | 989, 1054 |
| LweI | GCATC | 2 cut(s) | 562, 964 |
| MaeI | CTAG | 3 cut(s) | 270, 471, 1084 |
| MaeII | ACGT | 5 cut(s) | 28, 162, 231, 819, 940 |
| MaeIII | GTNAC | 7 cut(s) | 64, 169, 227, 232, 313, 460, 696 |
| MalI | GATC | 3 cut(s) | 334, 840, 1082 |
| MboI | GATC | 3 cut(s) | 332, 838, 1080 |
| MfeI | CAATTG | 1 cut(s) | 1048 |
| MlsI | TGGCCA | 2 cut(s) | 99, 645 |
| MluCI | AATT | 2 cut(s) | 890, 1048 |
| MluNI | TGGCCA | 2 cut(s) | 99, 645 |
| MlyI | GAGTC | 2 cut(s) | 130, 135 |
| MmeI | TCCRAC | 1 cut(s) | 521 |
| MnlI | CCTC | 6 cut(s) | 103, 304, 372, 402, 817, 955 |
| Mox20I | TGGCCA | 2 cut(s) | 99, 645 |
| MscI | TGGCCA | 2 cut(s) | 99, 645 |
| MseI | TTAA | 3 cut(s) | 159, 191, 879 |
| MslI | CAYNNNNRTG | 1 cut(s) | 593 |
| Msp20I | TGGCCA | 2 cut(s) | 99, 645 |
| MspA1I | CMGCKG | 1 cut(s) | 850 |
| MspCI | CTTAAG | 1 cut(s) | 190 |
| MspI | CCGG | 4 cut(s) | 258, 477, 510, 873 |
| MspR9I | CCNGG | 3 cut(s) | 53, 305, 478 |
| MunI | CAATTG | 1 cut(s) | 1048 |
| Mva1269I | GAATGC | 1 cut(s) | 304 |
| MvaI | CCWGG | 2 cut(s) | 53, 305 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 105, 791, 986 |
| NciI | CCSGG | 1 cut(s) | 478 |
| NcoI | CCATGG | 1 cut(s) | 222 |
| NdeII | GATC | 3 cut(s) | 332, 838, 1080 |
| NlaIII | CATG | 6 cut(s) | 20, 180, 226, 610, 732, 812 |
| NlaIV | GGNNCC | 1 cut(s) | 871 |
| NmuCI | GTSAC | 5 cut(s) | 64, 169, 227, 460, 696 |
| NspI | RCATGY | 1 cut(s) | 180 |
| NspV | TTCGAA | 1 cut(s) | 6 |
| PciI | ACATGT | 1 cut(s) | 176 |
| PctI | GAATGC | 1 cut(s) | 304 |
| PfeI | GAWTC | 2 cut(s) | 548, 921 |
| PfoI | TCCNGGA | 1 cut(s) | 476 |
| PinAI | ACCGGT | 1 cut(s) | 257 |
| PkrI | GCNGC | 3 cut(s) | 787, 979, 1069 |
| PleI | GAGTC | 2 cut(s) | 130, 134 |
| PmaCI | CACGTG | 1 cut(s) | 820 |
| PmlI | CACGTG | 1 cut(s) | 820 |
| PpsI | GAGTC | 2 cut(s) | 130, 134 |
| Ppu21I | YACGTR | 1 cut(s) | 820 |
| PscI | ACATGT | 1 cut(s) | 176 |
| PsiI | TTATAA | 1 cut(s) | 956 |
| Psp1406I | AACGTT | 1 cut(s) | 940 |
| Psp6I | CCWGG | 2 cut(s) | 51, 303 |
| PspCI | CACGTG | 1 cut(s) | 820 |
| PspGI | CCWGG | 2 cut(s) | 51, 303 |
| PspN4I | GGNNCC | 1 cut(s) | 871 |
| PspPI | GGNCC | 2 cut(s) | 716, 870 |
| RsaI | GTAC | 5 cut(s) | 165, 262, 457, 707, 1054 |
| RsaNI | GTAC | 5 cut(s) | 164, 261, 456, 706, 1053 |
| RseI | CAYNNNNRTG | 1 cut(s) | 593 |
| SaqAI | TTAA | 3 cut(s) | 159, 191, 879 |
| SatI | GCNGC | 3 cut(s) | 786, 978, 1068 |
| Sau3AI | GATC | 3 cut(s) | 332, 838, 1080 |
| Sau96I | GGNCC | 2 cut(s) | 716, 870 |
| SchI | GAGTC | 2 cut(s) | 130, 135 |
| ScrFI | CCNGG | 3 cut(s) | 53, 305, 478 |
| SfaNI | GCATC | 2 cut(s) | 562, 964 |
| SfuI | TTCGAA | 1 cut(s) | 6 |
| SinI | GGWCC | 1 cut(s) | 716 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 593 |
| SmlI | CTYRAG | 3 cut(s) | 138, 190, 749 |
| SmoI | CTYRAG | 3 cut(s) | 138, 190, 749 |
| Sse9I | AATT | 2 cut(s) | 890, 1048 |
| SsiI | CCGC | 7 cut(s) | 56, 198, 581, 691, 785, 848, 989 |
| SspMI | CTAG | 3 cut(s) | 270, 471, 1084 |
| StyD4I | CCNGG | 3 cut(s) | 51, 303, 476 |
| StyI | CCWWGG | 3 cut(s) | 100, 222, 269 |
| TaaI | ACNGT | 4 cut(s) | 460, 559, 723, 906 |
| TaiI | ACGT | 5 cut(s) | 31, 165, 234, 822, 943 |
| TaqI | TCGA | 3 cut(s) | 6, 129, 1079 |
| TasI | AATT | 2 cut(s) | 890, 1048 |
| TatI | WGTACW | 1 cut(s) | 1052 |
| TauI | GCSGC | 1 cut(s) | 788 |
| TfiI | GAWTC | 2 cut(s) | 548, 921 |
| Tru1I | TTAA | 3 cut(s) | 159, 191, 879 |
| Tru9I | TTAA | 3 cut(s) | 159, 191, 879 |
| TscAI | CASTG | 3 cut(s) | 174, 213, 726 |
| TseFI | GTSAC | 5 cut(s) | 64, 169, 227, 460, 696 |
| TseI | GCWGC | 2 cut(s) | 977, 1067 |
| Tsp45I | GTSAC | 5 cut(s) | 64, 169, 227, 460, 696 |
| TspDTI | ATGAA | 3 cut(s) | 38, 577, 795 |
| TspRI | CASTG | 3 cut(s) | 174, 213, 726 |
| Vha464I | CTTAAG | 1 cut(s) | 190 |
| VpaK11BI | GGWCC | 1 cut(s) | 716 |
| XceI | RCATGY | 1 cut(s) | 180 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 726 |
| XmaJI | CCTAGG | 1 cut(s) | 269 |
| XspI | CTAG | 3 cut(s) | 270, 471, 1084 |