ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1625 |
| AccB1I | GGYRCC | 3 cut(s) | 228, 271, 1748 |
| AccBSI | CCGCTC | 1 cut(s) | 166 |
| AclI | AACGTT | 1 cut(s) | 2191 |
| AclWI | GGATC | 7 cut(s) | 571, 573, 1527, 2034, 2632, 2634, 3173 |
| AcoI | YGGCCR | 1 cut(s) | 1926 |
| AcsI | RAATTY | 2 cut(s) | 131, 2227 |
| AcuI | CTGAAG | 5 cut(s) | 965, 1116, 1762, 2393, 3026 |
| AcvI | CACGTG | 1 cut(s) | 1790 |
| AdeI | CACNNNGTG | 2 cut(s) | 296, 1713 |
| AfaI | GTAC | 7 cut(s) | 192, 1026, 1706, 1756, 1845, 3087, 3173 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 428, 1126, 1499, 1542, 1764, 1961, 2184, 2380 |
| AflII | CTTAAG | 1 cut(s) | 2210 |
| AflIII | ACRYGT | 2 cut(s) | 1789, 3184 |
| AgsI | TTSAA | 9 cut(s) | 130, 136, 412, 460, 1228, 1582, 1722, 2420, 2498 |
| AjnI | CCWGG | 6 cut(s) | 929, 1549, 1763, 1943, 2518, 2990 |
| Alw21I | GWGCWC | 2 cut(s) | 1144, 2077 |
| AlwI | GGATC | 7 cut(s) | 571, 573, 1527, 2034, 2632, 2634, 3173 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1306, 3246 |
| Ama87I | CYCGRG | 2 cut(s) | 2196, 2424 |
| AoxI | GGCC | 5 cut(s) | 20, 1761, 1926, 1941, 2284 |
| ApeKI | GCWGC | 7 cut(s) | 202, 614, 1306, 1975, 1978, 2675, 2723 |
| ApoI | RAATTY | 2 cut(s) | 131, 2227 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2478 |
| AspLEI | GCGC | 2 cut(s) | 1626, 3126 |
| AspS9I | GGNCC | 5 cut(s) | 20, 299, 1819, 2284, 2522 |
| AsuC2I | CCSGG | 4 cut(s) | 24, 294, 1760, 2233 |
| AsuII | TTCGAA | 2 cut(s) | 2482, 2510 |
| AvaI | CYCGRG | 2 cut(s) | 2196, 2424 |
| AvaII | GGWCC | 3 cut(s) | 299, 1819, 2522 |
| AxyI | CCTNAGG | 2 cut(s) | 477, 3216 |
| BaeGI | GKGCMC | 3 cut(s) | 517, 1912, 2578 |
| BanI | GGYRCC | 3 cut(s) | 228, 271, 1748 |
| BanII | GRGCYC | 1 cut(s) | 2077 |
| BbrPI | CACGTG | 1 cut(s) | 1790 |
| BbsI | GAAGAC | 3 cut(s) | 710, 2029, 2771 |
| Bbv12I | GWGCWC | 2 cut(s) | 1144, 2077 |
| BbvCI | CCTCAGC | 2 cut(s) | 423, 1268 |
| BbvI | GCAGC | 7 cut(s) | 189, 601, 1293, 1962, 1990, 2662, 2710 |
| BccI | CCATC | 9 cut(s) | 925, 952, 1105, 1812, 2019, 2327, 2522, 2986, 3013 |
| BceAI | ACGGC | 1 cut(s) | 1895 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1631, 1665, 1967, 2001, 2177, 2211 |
| BciT130I | CCWGG | 6 cut(s) | 931, 1551, 1765, 1945, 2520, 2992 |
| BciVI | GTATCC | 1 cut(s) | 335 |
| BclI | TGATCA | 4 cut(s) | 376, 1050, 1794, 3111 |
| BcnI | CCSGG | 4 cut(s) | 24, 294, 1760, 2233 |
| BfaI | CTAG | 4 cut(s) | 726, 1809, 2298, 2787 |
| BfmI | CTRYAG | 1 cut(s) | 1976 |
| BfrI | CTTAAG | 1 cut(s) | 2210 |
| BfuI | GTATCC | 1 cut(s) | 335 |
| BlpI | GCTNAGC | 1 cut(s) | 2076 |
| Bme18I | GGWCC | 3 cut(s) | 299, 1819, 2522 |
| BmeT110I | CYCGRG | 2 cut(s) | 2196, 2424 |
| BmgT120I | GGNCC | 5 cut(s) | 20, 299, 1819, 2284, 2522 |
| BpiI | GAAGAC | 3 cut(s) | 710, 2029, 2771 |
| BpmI | CTGGAG | 3 cut(s) | 152, 1966, 2366 |
| Bpu10I | CCTNAGC | 3 cut(s) | 423, 1268, 2394 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2076 |
| Bpu14I | TTCGAA | 2 cut(s) | 2482, 2510 |
| BpuMI | CCSGG | 4 cut(s) | 24, 294, 1760, 2233 |
| BsaAI | YACGTR | 4 cut(s) | 518, 1790, 2579, 3175 |
| BsaBI | GATNNNNATC | 3 cut(s) | 575, 1235, 2636 |
| BsaI | GGTCTC | 4 cut(s) | 577, 1095, 2168, 2638 |
| BsaJI | CCNNGG | 8 cut(s) | 680, 1028, 1536, 1758, 2319, 2379, 2741, 3089 |
| BsaWI | WCCGGW | 3 cut(s) | 225, 274, 2223 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 953, 983, 1889, 1919, 3014, 3044 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 428, 1126, 1499, 1542, 1764, 1961, 2184, 2380 |
| Bse118I | RCCGGY | 1 cut(s) | 1122 |
| Bse1I | ACTGG | 3 cut(s) | 1037, 2727, 3098 |
| Bse21I | CCTNAGG | 2 cut(s) | 477, 3216 |
| Bse8I | GATNNNNATC | 3 cut(s) | 575, 1235, 2636 |
| BseBI | CCWGG | 6 cut(s) | 931, 1551, 1765, 1945, 2520, 2992 |
| BseDI | CCNNGG | 8 cut(s) | 680, 1028, 1536, 1758, 2319, 2379, 2741, 3089 |
| BseGI | GGATG | 6 cut(s) | 1390, 1489, 1804, 2089, 2389, 2503 |
| BseJI | GATNNNNATC | 3 cut(s) | 575, 1235, 2636 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 428, 1126, 1499, 1542, 1764, 1961, 2184, 2380 |
| BseNI | ACTGG | 3 cut(s) | 1037, 2727, 3098 |
| BseRI | GAGGAG | 5 cut(s) | 669, 1910, 1952, 2450, 2730 |
| BseSI | GKGCMC | 3 cut(s) | 517, 1912, 2578 |
| BseXI | GCAGC | 7 cut(s) | 189, 601, 1293, 1962, 1990, 2662, 2710 |
| BseYI | CCCAGC | 1 cut(s) | 1571 |
| BsgI | GTGCAG | 1 cut(s) | 1267 |
| Bsh1285I | CGRYCG | 5 cut(s) | 164, 997, 1127, 1817, 3058 |
| BshFI | GGCC | 5 cut(s) | 22, 1763, 1928, 1943, 2286 |
| BshNI | GGYRCC | 3 cut(s) | 228, 271, 1748 |
| BsiEI | CGRYCG | 5 cut(s) | 164, 997, 1127, 1817, 3058 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1144, 2077 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2196, 2424 |
| BsiSI | CCGG | 9 cut(s) | 23, 226, 269, 275, 293, 1123, 1760, 2224, 2233 |
| BslFI | GGGAC | 5 cut(s) | 295, 964, 1811, 3025, 3195 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 428, 1126, 1499, 1542, 1764, 1961, 2184, 2380 |
| BsmBI | CGTCTC | 1 cut(s) | 1490 |
| BsmFI | GGGAC | 5 cut(s) | 295, 964, 1811, 3025, 3195 |
| BsmI | GAATGC | 3 cut(s) | 876, 2449, 2937 |
| BsnI | GGCC | 5 cut(s) | 22, 1763, 1928, 1943, 2286 |
| Bso31I | GGTCTC | 4 cut(s) | 577, 1095, 2168, 2638 |
| BsoBI | CYCGRG | 2 cut(s) | 2196, 2424 |
| Bsp119I | TTCGAA | 2 cut(s) | 2482, 2510 |
| Bsp1286I | GDGCHC | 5 cut(s) | 517, 1144, 1912, 2077, 2578 |
| Bsp1407I | TGTACA | 1 cut(s) | 1704 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2076 |
| BspANI | GGCC | 5 cut(s) | 22, 1763, 1928, 1943, 2286 |
| BspHI | TCATGA | 2 cut(s) | 1167, 1408 |
| BspMAI | CTGCAG | 1 cut(s) | 1980 |
| BspPI | GGATC | 7 cut(s) | 571, 573, 1527, 2034, 2632, 2634, 3173 |
| BspQI | GCTCTTC | 1 cut(s) | 2454 |
| BspT104I | TTCGAA | 2 cut(s) | 2482, 2510 |
| BspT107I | GGYRCC | 3 cut(s) | 228, 271, 1748 |
| BspTI | CTTAAG | 1 cut(s) | 2210 |
| BspTNI | GGTCTC | 4 cut(s) | 577, 1095, 2168, 2638 |
| BsrBI | CCGCTC | 1 cut(s) | 166 |
| BsrFI | RCCGGY | 1 cut(s) | 1122 |
| BsrGI | TGTACA | 1 cut(s) | 1704 |
| BsrI | ACTGG | 3 cut(s) | 1037, 2727, 3098 |
| BssAI | RCCGGY | 1 cut(s) | 1122 |
| BssECI | CCNNGG | 8 cut(s) | 680, 1028, 1536, 1758, 2319, 2379, 2741, 3089 |
| BssT1I | CCWWGG | 4 cut(s) | 1028, 1536, 2319, 3089 |
| Bst2UI | CCWGG | 6 cut(s) | 931, 1551, 1765, 1945, 2520, 2992 |
| Bst4CI | ACNGT | 6 cut(s) | 47, 259, 323, 1487, 1670, 1933 |
| Bst6I | CTCTTC | 2 cut(s) | 1836, 2454 |
| BstAFI | CTTAAG | 1 cut(s) | 2210 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 659, 1077, 2720 |
| BstAUI | TGTACA | 1 cut(s) | 1704 |
| BstBAI | YACGTR | 4 cut(s) | 518, 1790, 2579, 3175 |
| BstBI | TTCGAA | 2 cut(s) | 2482, 2510 |
| BstC8I | GCNNGC | 6 cut(s) | 63, 67, 664, 1644, 1696, 3248 |
| BstEII | GGTNACC | 1 cut(s) | 2219 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 426, 1540 |
| BstF5I | GGATG | 6 cut(s) | 1390, 1489, 1804, 2089, 2389, 2503 |
| BstHHI | GCGC | 2 cut(s) | 1626, 3126 |
| BstMCI | CGRYCG | 5 cut(s) | 164, 997, 1127, 1817, 3058 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 75, 659, 1077, 1975, 2072, 2720 |
| BstNI | CCWGG | 6 cut(s) | 931, 1551, 1765, 1945, 2520, 2992 |
| BstNSI | RCATGY | 3 cut(s) | 621, 2682, 3188 |
| BstPI | GGTNACC | 1 cut(s) | 2219 |
| BstSFI | CTRYAG | 1 cut(s) | 1976 |
| BstSLI | GKGCMC | 3 cut(s) | 517, 1912, 2578 |
| BstSNI | TACGTA | 1 cut(s) | 3175 |
| BstV1I | GCAGC | 7 cut(s) | 189, 601, 1293, 1962, 1990, 2662, 2710 |
| BstV2I | GAAGAC | 3 cut(s) | 710, 2029, 2771 |
| BstX2I | RGATCY | 5 cut(s) | 565, 576, 2626, 2637, 3165 |
| BstYI | RGATCY | 5 cut(s) | 565, 576, 2626, 2637, 3165 |
| Bsu36I | CCTNAGG | 2 cut(s) | 477, 3216 |
| BsuI | GTATCC | 1 cut(s) | 335 |
| BsuRI | GGCC | 5 cut(s) | 22, 1763, 1928, 1943, 2286 |
| BtsCI | GGATG | 6 cut(s) | 1390, 1489, 1804, 2089, 2389, 2503 |
| BtsI | GCAGTG | 5 cut(s) | 114, 508, 1279, 2118, 2569 |
| BtsIMutI | CAGTG | 6 cut(s) | 114, 508, 1279, 1938, 2118, 2569 |
| Cac8I | GCNNGC | 6 cut(s) | 63, 67, 664, 1644, 1696, 3248 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1306, 3246 |
| CciI | TCATGA | 2 cut(s) | 1167, 1408 |
| CfoI | GCGC | 2 cut(s) | 1626, 3126 |
| Cfr10I | RCCGGY | 1 cut(s) | 1122 |
| Cfr13I | GGNCC | 5 cut(s) | 20, 299, 1819, 2284, 2522 |
| CseI | GACGC | 2 cut(s) | 1298, 1496 |
| CsiI | ACCWGGT | 1 cut(s) | 2518 |
| Csp6I | GTAC | 7 cut(s) | 191, 1025, 1705, 1755, 1844, 3086, 3172 |
| CviQI | GTAC | 7 cut(s) | 191, 1025, 1705, 1755, 1844, 3086, 3172 |
| DraI | TTTAAA | 1 cut(s) | 2151 |
| DraIII | CACNNNGTG | 2 cut(s) | 296, 1713 |
| EaeI | YGGCCR | 1 cut(s) | 1926 |
| Eam1104I | CTCTTC | 2 cut(s) | 1836, 2454 |
| EarI | CTCTTC | 2 cut(s) | 1836, 2454 |
| Ecl136II | GAGCTC | 1 cut(s) | 2075 |
| Eco105I | TACGTA | 1 cut(s) | 3175 |
| Eco130I | CCWWGG | 4 cut(s) | 1028, 1536, 2319, 3089 |
| Eco147I | AGGCCT | 1 cut(s) | 1943 |
| Eco24I | GRGCYC | 1 cut(s) | 2077 |
| Eco31I | GGTCTC | 4 cut(s) | 577, 1095, 2168, 2638 |
| Eco47I | GGWCC | 3 cut(s) | 299, 1819, 2522 |
| Eco53kI | GAGCTC | 1 cut(s) | 2075 |
| Eco57I | CTGAAG | 5 cut(s) | 965, 1116, 1762, 2393, 3026 |
| Eco72I | CACGTG | 1 cut(s) | 1790 |
| Eco81I | CCTNAGG | 2 cut(s) | 477, 3216 |
| Eco88I | CYCGRG | 2 cut(s) | 2196, 2424 |
| Eco91I | GGTNACC | 1 cut(s) | 2219 |
| EcoICRI | GAGCTC | 1 cut(s) | 2075 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 426, 1540 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2284 |
| EcoO65I | GGTNACC | 1 cut(s) | 2219 |
| EcoRI | GAATTC | 1 cut(s) | 2227 |
| EcoRII | CCWGG | 6 cut(s) | 929, 1549, 1763, 1943, 2518, 2990 |
| EcoT14I | CCWWGG | 4 cut(s) | 1028, 1536, 2319, 3089 |
| EcoT22I | ATGCAT | 3 cut(s) | 926, 2505, 2987 |
| EcoT38I | GRGCYC | 1 cut(s) | 2077 |
| ErhI | CCWWGG | 4 cut(s) | 1028, 1536, 2319, 3089 |
| Esp3I | CGTCTC | 1 cut(s) | 1490 |
| FaqI | GGGAC | 5 cut(s) | 295, 964, 1811, 3025, 3195 |
| FauI | CCCGC | 6 cut(s) | 48, 62, 1002, 1129, 1691, 3063 |
| FbaI | TGATCA | 4 cut(s) | 376, 1050, 1794, 3111 |
| FokI | GGATG | 6 cut(s) | 1397, 1476, 1791, 2096, 2396, 2490 |
| FriOI | GRGCYC | 1 cut(s) | 2077 |
| FspBI | CTAG | 4 cut(s) | 726, 1809, 2298, 2787 |
| FspI | TGCGCA | 1 cut(s) | 1625 |
| GlaI | GCGC | 2 cut(s) | 1625, 3125 |
| GsaI | CCCAGC | 1 cut(s) | 1575 |
| GsuI | CTGGAG | 3 cut(s) | 152, 1966, 2366 |
| HaeIII | GGCC | 5 cut(s) | 22, 1763, 1928, 1943, 2286 |
| HapII | CCGG | 9 cut(s) | 23, 226, 269, 275, 293, 1123, 1760, 2224, 2233 |
| HgaI | GACGC | 2 cut(s) | 1298, 1496 |
| HhaI | GCGC | 2 cut(s) | 1626, 3126 |
| Hin6I | GCGC | 2 cut(s) | 1624, 3124 |
| HinP1I | GCGC | 2 cut(s) | 1624, 3124 |
| HincII | GTYRAC | 2 cut(s) | 936, 2997 |
| HindII | GTYRAC | 2 cut(s) | 936, 2997 |
| HpaII | CCGG | 9 cut(s) | 23, 226, 269, 275, 293, 1123, 1760, 2224, 2233 |
| Hpy166II | GTNNAC | 7 cut(s) | 299, 936, 1149, 1473, 1707, 2997, 3208 |
| Hpy8I | GTNNAC | 7 cut(s) | 299, 936, 1149, 1473, 1707, 2997, 3208 |
| Hpy99I | CGWCG | 2 cut(s) | 1314, 1881 |
| HpyAV | CCTTC | 9 cut(s) | 562, 855, 1203, 1862, 1910, 2043, 2517, 2623, 2916 |
| HpyCH4III | ACNGT | 6 cut(s) | 47, 259, 323, 1487, 1670, 1933 |
| HpyCH4IV | ACGT | 5 cut(s) | 517, 1789, 2191, 2578, 3174 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 75, 659, 1077, 1975, 2072, 2720 |
| HpySE526I | ACGT | 5 cut(s) | 517, 1789, 2191, 2578, 3174 |
| HspAI | GCGC | 2 cut(s) | 1624, 3124 |
| Ksp22I | TGATCA | 4 cut(s) | 376, 1050, 1794, 3111 |
| LguI | GCTCTTC | 1 cut(s) | 2454 |
| Lsp1109I | GCAGC | 7 cut(s) | 189, 601, 1293, 1962, 1990, 2662, 2710 |
| MabI | ACCWGGT | 1 cut(s) | 2518 |
| MaeI | CTAG | 4 cut(s) | 726, 1809, 2298, 2787 |
| MaeII | ACGT | 5 cut(s) | 517, 1789, 2191, 2578, 3174 |
| MaeIII | GTNAC | 4 cut(s) | 35, 471, 1441, 2219 |
| MbiI | CCGCTC | 1 cut(s) | 166 |
| MflI | RGATCY | 5 cut(s) | 565, 576, 2626, 2637, 3165 |
| MhlI | GDGCHC | 5 cut(s) | 517, 1144, 1912, 2077, 2578 |
| MluCI | AATT | 8 cut(s) | 131, 137, 1186, 1883, 2156, 2227, 2328, 2484 |
| MlyI | GAGTC | 6 cut(s) | 946, 1207, 1382, 1642, 2324, 3007 |
| MmeI | TCCRAC | 3 cut(s) | 1644, 1818, 1900 |
| Mph1103I | ATGCAT | 3 cut(s) | 926, 2505, 2987 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2478 |
| MseI | TTAA | 3 cut(s) | 2150, 2211, 2280 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1058, 1378, 3119, 3189 |
| MspA1I | CMGCKG | 3 cut(s) | 1136, 1981, 2080 |
| MspCI | CTTAAG | 1 cut(s) | 2210 |
| MspI | CCGG | 9 cut(s) | 23, 226, 269, 275, 293, 1123, 1760, 2224, 2233 |
| Mva1269I | GAATGC | 3 cut(s) | 876, 2449, 2937 |
| MvaI | CCWGG | 6 cut(s) | 931, 1551, 1765, 1945, 2520, 2992 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 75, 659, 1077, 1975, 2072, 2720 |
| NciI | CCSGG | 4 cut(s) | 24, 294, 1760, 2233 |
| NmeAIII | GCCGAG | 2 cut(s) | 661, 2722 |
| NmuCI | GTSAC | 2 cut(s) | 1441, 2219 |
| NsbI | TGCGCA | 1 cut(s) | 1625 |
| NsiI | ATGCAT | 3 cut(s) | 926, 2505, 2987 |
| NspI | RCATGY | 3 cut(s) | 621, 2682, 3188 |
| NspV | TTCGAA | 2 cut(s) | 2482, 2510 |
| PaeR7I | CTCGAG | 1 cut(s) | 2196 |
| PagI | TCATGA | 2 cut(s) | 1167, 1408 |
| PceI | AGGCCT | 1 cut(s) | 1943 |
| PciI | ACATGT | 1 cut(s) | 3184 |
| PciSI | GCTCTTC | 1 cut(s) | 2454 |
| PctI | GAATGC | 3 cut(s) | 876, 2449, 2937 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2478 |
| PfeI | GAWTC | 6 cut(s) | 126, 144, 385, 1546, 1718, 3233 |
| PflFI | GACNNNGTC | 1 cut(s) | 1823 |
| Ple19I | CGATCG | 3 cut(s) | 997, 1817, 3058 |
| PleI | GAGTC | 6 cut(s) | 946, 1207, 1382, 1641, 2323, 3007 |
| PmaCI | CACGTG | 1 cut(s) | 1790 |
| PmlI | CACGTG | 1 cut(s) | 1790 |
| PpsI | GAGTC | 6 cut(s) | 946, 1207, 1382, 1641, 2323, 3007 |
| Ppu21I | YACGTR | 4 cut(s) | 518, 1790, 2579, 3175 |
| PscI | ACATGT | 1 cut(s) | 3184 |
| Psp124BI | GAGCTC | 1 cut(s) | 2077 |
| Psp1406I | AACGTT | 1 cut(s) | 2191 |
| Psp6I | CCWGG | 6 cut(s) | 929, 1549, 1763, 1943, 2518, 2990 |
| PspCI | CACGTG | 1 cut(s) | 1790 |
| PspEI | GGTNACC | 1 cut(s) | 2219 |
| PspFI | CCCAGC | 1 cut(s) | 1571 |
| PspGI | CCWGG | 6 cut(s) | 929, 1549, 1763, 1943, 2518, 2990 |
| PspPI | GGNCC | 5 cut(s) | 20, 299, 1819, 2284, 2522 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1017, 1049, 3078, 3110 |
| PstI | CTGCAG | 1 cut(s) | 1980 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1306, 3246 |
| PsuI | RGATCY | 5 cut(s) | 565, 576, 2626, 2637, 3165 |
| PsyI | GACNNNGTC | 1 cut(s) | 1823 |
| PvuI | CGATCG | 3 cut(s) | 997, 1817, 3058 |
| PvuII | CAGCTG | 2 cut(s) | 1981, 2080 |
| RsaI | GTAC | 7 cut(s) | 192, 1026, 1706, 1756, 1845, 3087, 3173 |
| RsaNI | GTAC | 7 cut(s) | 191, 1025, 1705, 1755, 1844, 3086, 3172 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1058, 1378, 3119, 3189 |
| SacI | GAGCTC | 1 cut(s) | 2077 |
| SapI | GCTCTTC | 1 cut(s) | 2454 |
| SaqAI | TTAA | 3 cut(s) | 2150, 2211, 2280 |
| Sau96I | GGNCC | 5 cut(s) | 20, 299, 1819, 2284, 2522 |
| SchI | GAGTC | 6 cut(s) | 946, 1207, 1382, 1642, 2324, 3007 |
| SduI | GDGCHC | 5 cut(s) | 517, 1144, 1912, 2077, 2578 |
| SexAI | ACCWGGT | 1 cut(s) | 2518 |
| SfcI | CTRYAG | 1 cut(s) | 1976 |
| Sfr274I | CTCGAG | 1 cut(s) | 2196 |
| SfuI | TTCGAA | 2 cut(s) | 2482, 2510 |
| SinI | GGWCC | 3 cut(s) | 299, 1819, 2522 |
| SlaI | CTCGAG | 1 cut(s) | 2196 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1058, 1378, 3119, 3189 |
| SmlI | CTYRAG | 2 cut(s) | 2196, 2210 |
| SmoI | CTYRAG | 2 cut(s) | 2196, 2210 |
| SnaBI | TACGTA | 1 cut(s) | 3175 |
| Sse9I | AATT | 8 cut(s) | 131, 137, 1186, 1883, 2156, 2227, 2328, 2484 |
| SseBI | AGGCCT | 1 cut(s) | 1943 |
| SspMI | CTAG | 4 cut(s) | 726, 1809, 2298, 2787 |
| SstI | GAGCTC | 1 cut(s) | 2077 |
| StuI | AGGCCT | 1 cut(s) | 1943 |
| StyI | CCWWGG | 4 cut(s) | 1028, 1536, 2319, 3089 |
| TaaI | ACNGT | 6 cut(s) | 47, 259, 323, 1487, 1670, 1933 |
| TaiI | ACGT | 5 cut(s) | 520, 1792, 2194, 2581, 3177 |
| TasI | AATT | 8 cut(s) | 131, 137, 1186, 1883, 2156, 2227, 2328, 2484 |
| TatI | WGTACW | 2 cut(s) | 190, 1704 |
| TauI | GCSGC | 5 cut(s) | 1083, 1122, 1694, 1858, 2188 |
| TfiI | GAWTC | 6 cut(s) | 126, 144, 385, 1546, 1718, 3233 |
| Tru1I | TTAA | 3 cut(s) | 2150, 2211, 2280 |
| Tru9I | TTAA | 3 cut(s) | 2150, 2211, 2280 |
| TscAI | CASTG | 6 cut(s) | 121, 508, 1286, 1938, 2125, 2569 |
| TseFI | GTSAC | 2 cut(s) | 1441, 2219 |
| TseI | GCWGC | 7 cut(s) | 202, 614, 1306, 1975, 1978, 2675, 2723 |
| Tsp45I | GTSAC | 2 cut(s) | 1441, 2219 |
| TspDTI | ATGAA | 8 cut(s) | 456, 1065, 1153, 1184, 1397, 1881, 2169, 2456 |
| TspGWI | ACGGA | 3 cut(s) | 1031, 1134, 3092 |
| TspRI | CASTG | 6 cut(s) | 121, 508, 1286, 1938, 2125, 2569 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1823 |
| Vha464I | CTTAAG | 1 cut(s) | 2210 |
| VpaK11BI | GGWCC | 3 cut(s) | 299, 1819, 2522 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 426, 1540 |
| XapI | RAATTY | 2 cut(s) | 131, 2227 |
| XceI | RCATGY | 3 cut(s) | 621, 2682, 3188 |
| XhoI | CTCGAG | 1 cut(s) | 2196 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2478 |
| XspI | CTAG | 4 cut(s) | 726, 1809, 2298, 2787 |
| Zsp2I | ATGCAT | 3 cut(s) | 926, 2505, 2987 |