Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 321 |
| AciI | CCGC | 3 cut(s) | 269, 497, 605 |
| AclI | AACGTT | 1 cut(s) | 253 |
| AclWI | GGATC | 1 cut(s) | 191 |
| AcsI | RAATTY | 1 cut(s) | 631 |
| AfeI | AGCGCT | 1 cut(s) | 569 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 151, 247, 332, 375, 376, 670, 673 |
| AgsI | TTSAA | 2 cut(s) | 61, 728 |
| AjnI | CCWGG | 3 cut(s) | 201, 374, 591 |
| AleI | CACNNNNGTG | 1 cut(s) | 211 |
| AluBI | AGCT | 1 cut(s) | 479 |
| AluI | AGCT | 1 cut(s) | 479 |
| Alw26I | GTCTC | 1 cut(s) | 706 |
| AlwI | GGATC | 1 cut(s) | 191 |
| Aor51HI | AGCGCT | 1 cut(s) | 569 |
| AoxI | GGCC | 4 cut(s) | 199, 280, 448, 532 |
| ApaI | GGGCCC | 1 cut(s) | 284 |
| ApeKI | GCWGC | 2 cut(s) | 524, 691 |
| ApoI | RAATTY | 1 cut(s) | 631 |
| AseI | ATTAAT | 1 cut(s) | 68 |
| AspLEI | GCGC | 1 cut(s) | 570 |
| AspS9I | GGNCC | 5 cut(s) | 280, 281, 379, 448, 533 |
| AsuC2I | CCSGG | 1 cut(s) | 326 |
| AsuHPI | GGTGA | 1 cut(s) | 286 |
| AvaII | GGWCC | 1 cut(s) | 379 |
| BaeGI | GKGCMC | 2 cut(s) | 284, 324 |
| BanI | GGYRCC | 1 cut(s) | 321 |
| BanII | GRGCYC | 1 cut(s) | 284 |
| BbsI | GAAGAC | 1 cut(s) | 149 |
| BbvI | GCAGC | 2 cut(s) | 511, 703 |
| BccI | CCATC | 1 cut(s) | 233 |
| BceAI | ACGGC | 1 cut(s) | 65 |
| BciT130I | CCWGG | 3 cut(s) | 203, 376, 593 |
| BcnI | CCSGG | 1 cut(s) | 326 |
| BcoDI | GTCTC | 1 cut(s) | 706 |
| BfaI | CTAG | 3 cut(s) | 371, 621, 642 |
| BfoI | RGCGCY | 1 cut(s) | 571 |
| BisI | GCNGC | 2 cut(s) | 525, 692 |
| BlsI | GCNGC | 2 cut(s) | 526, 693 |
| Bme1390I | CCNGG | 4 cut(s) | 203, 326, 376, 593 |
| Bme18I | GGWCC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 5 cut(s) | 280, 281, 379, 448, 533 |
| BmiI | GGNNCC | 6 cut(s) | 282, 283, 323, 380, 381, 449 |
| BmrFI | CCNGG | 4 cut(s) | 203, 326, 376, 593 |
| BmsI | GCATC | 4 cut(s) | 95, 256, 462, 671 |
| BpiI | GAAGAC | 1 cut(s) | 149 |
| BpmI | CTGGAG | 2 cut(s) | 216, 446 |
| BpuMI | CCSGG | 1 cut(s) | 326 |
| Bsa29I | ATCGAT | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 3 cut(s) | 25, 375, 492 |
| BsaWI | WCCGGW | 1 cut(s) | 180 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 151, 247, 332, 375, 376, 670, 673 |
| Bse118I | RCCGGY | 1 cut(s) | 404 |
| Bse1I | ACTGG | 1 cut(s) | 337 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| BseBI | CCWGG | 3 cut(s) | 203, 376, 593 |
| BseCI | ATCGAT | 1 cut(s) | 190 |
| BseDI | CCNNGG | 3 cut(s) | 25, 375, 492 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 151, 247, 332, 375, 376, 670, 673 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseMII | CTCAG | 1 cut(s) | 115 |
| BseNI | ACTGG | 1 cut(s) | 337 |
| BseRI | GAGGAG | 1 cut(s) | 656 |
| BseSI | GKGCMC | 2 cut(s) | 284, 324 |
| BseXI | GCAGC | 2 cut(s) | 511, 703 |
| BshFI | GGCC | 4 cut(s) | 201, 282, 450, 534 |
| BshNI | GGYRCC | 1 cut(s) | 321 |
| BshVI | ATCGAT | 1 cut(s) | 190 |
| BsiSI | CCGG | 4 cut(s) | 181, 326, 405, 484 |
| BslFI | GGGAC | 1 cut(s) | 392 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 151, 247, 332, 375, 376, 670, 673 |
| BsmAI | GTCTC | 1 cut(s) | 706 |
| BsmFI | GGGAC | 1 cut(s) | 392 |
| BsnI | GGCC | 4 cut(s) | 201, 282, 450, 534 |
| Bsp120I | GGGCCC | 1 cut(s) | 280 |
| Bsp1286I | GDGCHC | 2 cut(s) | 284, 324 |
| Bsp143I | GATC | 4 cut(s) | 93, 146, 183, 191 |
| BspACI | CCGC | 3 cut(s) | 269, 497, 605 |
| BspANI | GGCC | 4 cut(s) | 201, 282, 450, 534 |
| BspCNI | CTCAG | 1 cut(s) | 114 |
| BspDI | ATCGAT | 1 cut(s) | 190 |
| BspLI | GGNNCC | 6 cut(s) | 282, 283, 323, 380, 381, 449 |
| BspPI | GGATC | 1 cut(s) | 191 |
| BspT107I | GGYRCC | 1 cut(s) | 321 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BsrFI | RCCGGY | 1 cut(s) | 404 |
| BsrI | ACTGG | 1 cut(s) | 337 |
| BssAI | RCCGGY | 1 cut(s) | 404 |
| BssECI | CCNNGG | 3 cut(s) | 25, 375, 492 |
| BssMI | GATC | 4 cut(s) | 93, 146, 183, 191 |
| BssT1I | CCWWGG | 2 cut(s) | 25, 492 |
| Bst2UI | CCWGG | 3 cut(s) | 203, 376, 593 |
| Bst4CI | ACNGT | 3 cut(s) | 210, 503, 717 |
| Bst6I | CTCTTC | 1 cut(s) | 723 |
| BstC8I | GCNNGC | 5 cut(s) | 54, 406, 477, 489, 603 |
| BstDEI | CTNAG | 1 cut(s) | 101 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 671 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstH2I | RGCGCY | 1 cut(s) | 571 |
| BstHHI | GCGC | 1 cut(s) | 570 |
| BstKTI | GATC | 4 cut(s) | 96, 149, 186, 194 |
| BstMAI | GTCTC | 1 cut(s) | 706 |
| BstMBI | GATC | 4 cut(s) | 93, 146, 183, 191 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 62, 456, 567, 602 |
| BstNI | CCWGG | 3 cut(s) | 203, 376, 593 |
| BstNSI | RCATGY | 1 cut(s) | 56 |
| BstSCI | CCNGG | 4 cut(s) | 201, 324, 374, 591 |
| BstSLI | GKGCMC | 2 cut(s) | 284, 324 |
| BstV1I | GCAGC | 2 cut(s) | 511, 703 |
| BstV2I | GAAGAC | 1 cut(s) | 149 |
| Bsu15I | ATCGAT | 1 cut(s) | 190 |
| BsuRI | GGCC | 4 cut(s) | 201, 282, 450, 534 |
| BsuTUI | ATCGAT | 1 cut(s) | 190 |
| BtgZI | GCGATG | 1 cut(s) | 694 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| BtsIMutI | CAGTG | 2 cut(s) | 206, 306 |
| Cac8I | GCNNGC | 5 cut(s) | 54, 406, 477, 489, 603 |
| CfoI | GCGC | 1 cut(s) | 570 |
| Cfr10I | RCCGGY | 1 cut(s) | 404 |
| Cfr13I | GGNCC | 5 cut(s) | 280, 281, 379, 448, 533 |
| ClaI | ATCGAT | 1 cut(s) | 190 |
| CseI | GACGC | 1 cut(s) | 329 |
| CviAII | CATG | 5 cut(s) | 53, 83, 297, 464, 656 |
| DdeI | CTNAG | 1 cut(s) | 101 |
| DpnI | GATC | 4 cut(s) | 95, 148, 185, 193 |
| DpnII | GATC | 4 cut(s) | 93, 146, 183, 191 |
| Eam1104I | CTCTTC | 1 cut(s) | 723 |
| EarI | CTCTTC | 1 cut(s) | 723 |
| EciI | GGCGGA | 2 cut(s) | 512, 620 |
| Eco130I | CCWWGG | 2 cut(s) | 25, 492 |
| Eco147I | AGGCCT | 1 cut(s) | 201 |
| Eco24I | GRGCYC | 1 cut(s) | 284 |
| Eco32I | GATATC | 1 cut(s) | 238 |
| Eco47I | GGWCC | 1 cut(s) | 379 |
| Eco47III | AGCGCT | 1 cut(s) | 569 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 671 |
| EcoO109I | RGGNCCY | 3 cut(s) | 280, 281, 379 |
| EcoRII | CCWGG | 3 cut(s) | 201, 374, 591 |
| EcoRV | GATATC | 1 cut(s) | 238 |
| EcoT14I | CCWWGG | 2 cut(s) | 25, 492 |
| EcoT22I | ATGCAT | 1 cut(s) | 88 |
| EcoT38I | GRGCYC | 1 cut(s) | 284 |
| ErhI | CCWWGG | 2 cut(s) | 25, 492 |
| FaeI | CATG | 5 cut(s) | 56, 86, 300, 467, 659 |
| FaqI | GGGAC | 1 cut(s) | 392 |
| FatI | CATG | 5 cut(s) | 52, 82, 296, 463, 655 |
| Fnu4HI | GCNGC | 2 cut(s) | 525, 692 |
| FokI | GGATG | 1 cut(s) | 230 |
| FriOI | GRGCYC | 1 cut(s) | 284 |
| Fsp4HI | GCNGC | 2 cut(s) | 525, 692 |
| FspBI | CTAG | 3 cut(s) | 371, 621, 642 |
| GlaI | GCGC | 1 cut(s) | 569 |
| GluI | GCNGC | 2 cut(s) | 525, 692 |
| GsuI | CTGGAG | 2 cut(s) | 216, 446 |
| HaeII | RGCGCY | 1 cut(s) | 571 |
| HaeIII | GGCC | 4 cut(s) | 201, 282, 450, 534 |
| HapII | CCGG | 4 cut(s) | 181, 326, 405, 484 |
| HgaI | GACGC | 1 cut(s) | 329 |
| HhaI | GCGC | 1 cut(s) | 570 |
| Hin1II | CATG | 5 cut(s) | 56, 86, 300, 467, 659 |
| Hin6I | GCGC | 1 cut(s) | 568 |
| HinP1I | GCGC | 1 cut(s) | 568 |
| HindIII | AAGCTT | 1 cut(s) | 477 |
| HinfI | GANTC | 4 cut(s) | 221, 421, 551, 615 |
| HpaII | CCGG | 4 cut(s) | 181, 326, 405, 484 |
| HphI | GGTGA | 1 cut(s) | 286 |
| Hpy166II | GTNNAC | 1 cut(s) | 306 |
| Hpy188I | TCNGA | 6 cut(s) | 12, 75, 93, 471, 652, 711 |
| Hpy188III | TCNNGA | 2 cut(s) | 195, 425 |
| Hpy8I | GTNNAC | 1 cut(s) | 306 |
| HpyAV | CCTTC | 1 cut(s) | 271 |
| HpyCH4III | ACNGT | 3 cut(s) | 210, 503, 717 |
| HpyCH4IV | ACGT | 1 cut(s) | 253 |
| HpyCH4V | TGCA | 5 cut(s) | 86, 117, 459, 475, 691 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 62, 456, 567, 602 |
| HpyF3I | CTNAG | 1 cut(s) | 101 |
| HpySE526I | ACGT | 1 cut(s) | 253 |
| Hsp92II | CATG | 5 cut(s) | 56, 86, 300, 467, 659 |
| HspAI | GCGC | 1 cut(s) | 568 |
| KflI | GGGWCCC | 1 cut(s) | 379 |
| KroI | GCCGGC | 1 cut(s) | 404 |
| KroNI | GCCGGC | 1 cut(s) | 406 |
| Kzo9I | GATC | 4 cut(s) | 93, 146, 183, 191 |
| LmnI | GCTCC | 1 cut(s) | 546 |
| Lsp1109I | GCAGC | 2 cut(s) | 511, 703 |
| LweI | GCATC | 4 cut(s) | 95, 256, 462, 671 |
| MaeI | CTAG | 3 cut(s) | 371, 621, 642 |
| MaeII | ACGT | 1 cut(s) | 253 |
| MaeIII | GTNAC | 2 cut(s) | 360, 587 |
| MalI | GATC | 4 cut(s) | 95, 148, 185, 193 |
| MboI | GATC | 4 cut(s) | 93, 146, 183, 191 |
| MboII | GAAGA | 1 cut(s) | 149 |
| MhlI | GDGCHC | 2 cut(s) | 284, 324 |
| MluCI | AATT | 4 cut(s) | 4, 19, 69, 631 |
| MnlI | CCTC | 8 cut(s) | 191, 265, 358, 572, 667, 674, 677, 690 |
| Mph1103I | ATGCAT | 1 cut(s) | 88 |
| MroNI | GCCGGC | 1 cut(s) | 404 |
| MseI | TTAA | 2 cut(s) | 68, 414 |
| MslI | CAYNNNNRTG | 1 cut(s) | 211 |
| MspI | CCGG | 4 cut(s) | 181, 326, 405, 484 |
| MspR9I | CCNGG | 4 cut(s) | 203, 326, 376, 593 |
| MvaI | CCWGG | 3 cut(s) | 203, 376, 593 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 62, 456, 567, 602 |
| NaeI | GCCGGC | 1 cut(s) | 406 |
| NciI | CCSGG | 1 cut(s) | 326 |
| NdeII | GATC | 4 cut(s) | 93, 146, 183, 191 |
| NgoMIV | GCCGGC | 1 cut(s) | 404 |
| NlaIII | CATG | 5 cut(s) | 56, 86, 300, 467, 659 |
| NlaIV | GGNNCC | 6 cut(s) | 282, 283, 323, 380, 381, 449 |
| NsiI | ATGCAT | 1 cut(s) | 88 |
| NspI | RCATGY | 1 cut(s) | 56 |
| OliI | CACNNNNGTG | 1 cut(s) | 211 |
| PaeI | GCATGC | 1 cut(s) | 56 |
| PceI | AGGCCT | 1 cut(s) | 201 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 405 |
| PdiI | GCCGGC | 1 cut(s) | 406 |
| PfeI | GAWTC | 4 cut(s) | 221, 421, 551, 615 |
| PflFI | GACNNNGTC | 1 cut(s) | 339 |
| PkrI | GCNGC | 2 cut(s) | 526, 693 |
| PpuMI | RGGWCCY | 1 cut(s) | 379 |
| PshBI | ATTAAT | 1 cut(s) | 68 |
| Psp1406I | AACGTT | 1 cut(s) | 253 |
| Psp5II | RGGWCCY | 1 cut(s) | 379 |
| Psp6I | CCWGG | 3 cut(s) | 201, 374, 591 |
| PspGI | CCWGG | 3 cut(s) | 201, 374, 591 |
| PspN4I | GGNNCC | 6 cut(s) | 282, 283, 323, 380, 381, 449 |
| PspOMI | GGGCCC | 1 cut(s) | 280 |
| PspPI | GGNCC | 5 cut(s) | 280, 281, 379, 448, 533 |
| PspPPI | RGGWCCY | 1 cut(s) | 379 |
| PsyI | GACNNNGTC | 1 cut(s) | 339 |
| RseI | CAYNNNNRTG | 1 cut(s) | 211 |
| SaqAI | TTAA | 2 cut(s) | 68, 414 |
| SatI | GCNGC | 2 cut(s) | 525, 692 |
| Sau3AI | GATC | 4 cut(s) | 93, 146, 183, 191 |
| Sau96I | GGNCC | 5 cut(s) | 280, 281, 379, 448, 533 |
| ScrFI | CCNGG | 4 cut(s) | 203, 326, 376, 593 |
| SduI | GDGCHC | 2 cut(s) | 284, 324 |
| SetI | ASST | 7 cut(s) | 31, 256, 276, 350, 481, 583, 678 |
| SfaNI | GCATC | 4 cut(s) | 95, 256, 462, 671 |
| SinI | GGWCC | 1 cut(s) | 379 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 211 |
| SphI | GCATGC | 1 cut(s) | 56 |
| Sse9I | AATT | 4 cut(s) | 4, 19, 69, 631 |
| SseBI | AGGCCT | 1 cut(s) | 201 |
| SsiI | CCGC | 3 cut(s) | 269, 497, 605 |
| SspMI | CTAG | 3 cut(s) | 371, 621, 642 |
| StuI | AGGCCT | 1 cut(s) | 201 |
| StyD4I | CCNGG | 4 cut(s) | 201, 324, 374, 591 |
| StyI | CCWWGG | 2 cut(s) | 25, 492 |
| TaaI | ACNGT | 3 cut(s) | 210, 503, 717 |
| TaiI | ACGT | 1 cut(s) | 256 |
| TaqI | TCGA | 1 cut(s) | 190 |
| TasI | AATT | 4 cut(s) | 4, 19, 69, 631 |
| TfiI | GAWTC | 4 cut(s) | 221, 421, 551, 615 |
| Tru1I | TTAA | 2 cut(s) | 68, 414 |
| Tru9I | TTAA | 2 cut(s) | 68, 414 |
| TscAI | CASTG | 2 cut(s) | 213, 313 |
| TseI | GCWGC | 2 cut(s) | 524, 691 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 230 |
| TspRI | CASTG | 2 cut(s) | 213, 313 |
| Tth111I | GACNNNGTC | 1 cut(s) | 339 |
| VpaK11BI | GGWCC | 1 cut(s) | 379 |
| VspI | ATTAAT | 1 cut(s) | 68 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 671 |
| XapI | RAATTY | 1 cut(s) | 631 |
| XceI | RCATGY | 1 cut(s) | 56 |
| XspI | CTAG | 3 cut(s) | 371, 621, 642 |
| Zsp2I | ATGCAT | 1 cut(s) | 88 |