ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 270, 430 |
| AclWI | GGATC | 2 cut(s) | 341, 617 |
| AcyI | GRCGYC | 1 cut(s) | 424 |
| AgsI | TTSAA | 4 cut(s) | 362, 380, 451, 612 |
| AjnI | CCWGG | 1 cut(s) | 65 |
| AluBI | AGCT | 7 cut(s) | 14, 203, 276, 416, 473, 491, 632 |
| AluI | AGCT | 7 cut(s) | 14, 203, 276, 416, 473, 491, 632 |
| Alw21I | GWGCWC | 1 cut(s) | 130 |
| Alw44I | GTGCAC | 1 cut(s) | 126 |
| AlwI | GGATC | 2 cut(s) | 341, 617 |
| AoxI | GGCC | 1 cut(s) | 541 |
| ApaLI | GTGCAC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 4 cut(s) | 157, 203, 206, 629 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 29, 61 |
| AspLEI | GCGC | 1 cut(s) | 240 |
| AspS9I | GGNCC | 1 cut(s) | 97 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AvaII | GGWCC | 1 cut(s) | 97 |
| BaeGI | GKGCMC | 1 cut(s) | 130 |
| Bbv12I | GWGCWC | 1 cut(s) | 130 |
| BbvI | GCAGC | 4 cut(s) | 144, 190, 193, 641 |
| BccI | CCATC | 1 cut(s) | 313 |
| BciT130I | CCWGG | 1 cut(s) | 67 |
| BciVI | GTATCC | 1 cut(s) | 144 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BfaI | CTAG | 3 cut(s) | 144, 234, 435 |
| BfmI | CTRYAG | 1 cut(s) | 627 |
| BfoI | RGCGCY | 1 cut(s) | 241 |
| BfuI | GTATCC | 1 cut(s) | 144 |
| BisI | GCNGC | 4 cut(s) | 158, 204, 207, 630 |
| BlsI | GCNGC | 4 cut(s) | 159, 205, 208, 631 |
| Bme1390I | CCNGG | 2 cut(s) | 67, 101 |
| Bme18I | GGWCC | 1 cut(s) | 97 |
| BmgT120I | GGNCC | 1 cut(s) | 97 |
| BmrFI | CCNGG | 2 cut(s) | 67, 101 |
| BmsI | GCATC | 2 cut(s) | 257, 288 |
| BpmI | CTGGAG | 1 cut(s) | 53 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| BsaHI | GRCGYC | 1 cut(s) | 424 |
| BsaJI | CCNNGG | 3 cut(s) | 66, 100, 227 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 145, 175 |
| Bse1I | ACTGG | 1 cut(s) | 212 |
| BseBI | CCWGG | 1 cut(s) | 67 |
| BseDI | CCNNGG | 3 cut(s) | 66, 100, 227 |
| BseGI | GGATG | 1 cut(s) | 272 |
| BseMII | CTCAG | 4 cut(s) | 128, 483, 578, 588 |
| BseNI | ACTGG | 1 cut(s) | 212 |
| BseSI | GKGCMC | 1 cut(s) | 130 |
| BseXI | GCAGC | 4 cut(s) | 144, 190, 193, 641 |
| BsgI | GTGCAG | 1 cut(s) | 192 |
| BshFI | GGCC | 1 cut(s) | 543 |
| BsiHKAI | GWGCWC | 1 cut(s) | 130 |
| BsiSI | CCGG | 1 cut(s) | 100 |
| BsnI | GGCC | 1 cut(s) | 543 |
| Bsp1286I | GDGCHC | 1 cut(s) | 130 |
| Bsp143I | GATC | 3 cut(s) | 175, 346, 622 |
| BspACI | CCGC | 2 cut(s) | 270, 430 |
| BspANI | GGCC | 1 cut(s) | 543 |
| BspCNI | CTCAG | 4 cut(s) | 127, 482, 577, 587 |
| BspMAI | CTGCAG | 1 cut(s) | 631 |
| BspPI | GGATC | 2 cut(s) | 341, 617 |
| BsrI | ACTGG | 1 cut(s) | 212 |
| BssECI | CCNNGG | 3 cut(s) | 66, 100, 227 |
| BssMI | GATC | 3 cut(s) | 175, 346, 622 |
| BssNI | GRCGYC | 1 cut(s) | 424 |
| BssT1I | CCWWGG | 1 cut(s) | 227 |
| Bst2UI | CCWGG | 1 cut(s) | 67 |
| Bst4CI | ACNGT | 2 cut(s) | 132, 509 |
| Bst6I | CTCTTC | 1 cut(s) | 381 |
| BstACI | GRCGYC | 1 cut(s) | 424 |
| BstC8I | GCNNGC | 1 cut(s) | 126 |
| BstDEI | CTNAG | 5 cut(s) | 114, 315, 469, 564, 574 |
| BstF5I | GGATG | 1 cut(s) | 272 |
| BstH2I | RGCGCY | 1 cut(s) | 241 |
| BstHHI | GCGC | 1 cut(s) | 240 |
| BstKTI | GATC | 3 cut(s) | 178, 349, 625 |
| BstMBI | GATC | 3 cut(s) | 175, 346, 622 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 244 |
| BstNI | CCWGG | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 65, 99 |
| BstSFI | CTRYAG | 1 cut(s) | 627 |
| BstSLI | GKGCMC | 1 cut(s) | 130 |
| BstV1I | GCAGC | 4 cut(s) | 144, 190, 193, 641 |
| BsuI | GTATCC | 1 cut(s) | 144 |
| BsuRI | GGCC | 1 cut(s) | 543 |
| BtsCI | GGATG | 1 cut(s) | 272 |
| BtsIMutI | CAGTG | 3 cut(s) | 128, 528, 582 |
| Cac8I | GCNNGC | 1 cut(s) | 126 |
| CfoI | GCGC | 1 cut(s) | 240 |
| Cfr13I | GGNCC | 1 cut(s) | 97 |
| CseI | GACGC | 1 cut(s) | 413 |
| CviAII | CATG | 2 cut(s) | 40, 257 |
| DdeI | CTNAG | 5 cut(s) | 114, 315, 469, 564, 574 |
| DpnI | GATC | 3 cut(s) | 177, 348, 624 |
| DpnII | GATC | 3 cut(s) | 175, 346, 622 |
| Eam1104I | CTCTTC | 1 cut(s) | 381 |
| EarI | CTCTTC | 1 cut(s) | 381 |
| Eco130I | CCWWGG | 1 cut(s) | 227 |
| Eco47I | GGWCC | 1 cut(s) | 97 |
| EcoRII | CCWGG | 1 cut(s) | 65 |
| EcoT14I | CCWWGG | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 227 |
| FaeI | CATG | 2 cut(s) | 43, 260 |
| FaiI | YATR | 9 cut(s) | 41, 180, 258, 326, 390, 445, 594, 602, 658 |
| FatI | CATG | 2 cut(s) | 39, 256 |
| FauI | CCCGC | 1 cut(s) | 263 |
| Fnu4HI | GCNGC | 4 cut(s) | 158, 204, 207, 630 |
| FokI | GGATG | 1 cut(s) | 279 |
| Fsp4HI | GCNGC | 4 cut(s) | 158, 204, 207, 630 |
| FspBI | CTAG | 3 cut(s) | 144, 234, 435 |
| GlaI | GCGC | 1 cut(s) | 239 |
| GluI | GCNGC | 4 cut(s) | 158, 204, 207, 630 |
| GsuI | CTGGAG | 1 cut(s) | 53 |
| HaeII | RGCGCY | 1 cut(s) | 241 |
| HaeIII | GGCC | 1 cut(s) | 543 |
| HapII | CCGG | 1 cut(s) | 100 |
| HgaI | GACGC | 1 cut(s) | 413 |
| HhaI | GCGC | 1 cut(s) | 240 |
| Hin1I | GRCGYC | 1 cut(s) | 424 |
| Hin1II | CATG | 2 cut(s) | 43, 260 |
| Hin6I | GCGC | 1 cut(s) | 238 |
| HinP1I | GCGC | 1 cut(s) | 238 |
| HindIII | AAGCTT | 3 cut(s) | 12, 414, 489 |
| HinfI | GANTC | 2 cut(s) | 171, 501 |
| HpaII | CCGG | 1 cut(s) | 100 |
| Hpy166II | GTNNAC | 1 cut(s) | 128 |
| Hpy188I | TCNGA | 3 cut(s) | 117, 221, 622 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 95, 435, 647 |
| Hpy8I | GTNNAC | 1 cut(s) | 128 |
| HpyAV | CCTTC | 3 cut(s) | 79, 360, 570 |
| HpyCH4III | ACNGT | 2 cut(s) | 132, 509 |
| HpyCH4IV | ACGT | 1 cut(s) | 91 |
| HpyCH4V | TGCA | 5 cut(s) | 27, 111, 128, 209, 629 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 244 |
| HpyF3I | CTNAG | 5 cut(s) | 114, 315, 469, 564, 574 |
| HpySE526I | ACGT | 1 cut(s) | 91 |
| Hsp92I | GRCGYC | 1 cut(s) | 424 |
| Hsp92II | CATG | 2 cut(s) | 43, 260 |
| HspAI | GCGC | 1 cut(s) | 238 |
| Kzo9I | GATC | 3 cut(s) | 175, 346, 622 |
| LmnI | GCTCC | 1 cut(s) | 273 |
| Lsp1109I | GCAGC | 4 cut(s) | 144, 190, 193, 641 |
| LweI | GCATC | 2 cut(s) | 257, 288 |
| MaeI | CTAG | 3 cut(s) | 144, 234, 435 |
| MaeII | ACGT | 1 cut(s) | 91 |
| MaeIII | GTNAC | 3 cut(s) | 151, 464, 526 |
| MalI | GATC | 3 cut(s) | 177, 348, 624 |
| MboI | GATC | 3 cut(s) | 175, 346, 622 |
| MboII | GAAGA | 2 cut(s) | 368, 422 |
| MhlI | GDGCHC | 1 cut(s) | 130 |
| MluCI | AATT | 3 cut(s) | 118, 181, 380 |
| MlyI | GAGTC | 1 cut(s) | 495 |
| MnlI | CCTC | 6 cut(s) | 28, 171, 190, 448, 583, 631 |
| MspA1I | CMGCKG | 1 cut(s) | 430 |
| MspI | CCGG | 1 cut(s) | 100 |
| MspR9I | CCNGG | 2 cut(s) | 67, 101 |
| MvaI | CCWGG | 1 cut(s) | 67 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 244 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NdeII | GATC | 3 cut(s) | 175, 346, 622 |
| NlaIII | CATG | 2 cut(s) | 43, 260 |
| NmuCI | GTSAC | 2 cut(s) | 151, 526 |
| PfeI | GAWTC | 1 cut(s) | 171 |
| PkrI | GCNGC | 4 cut(s) | 159, 205, 208, 631 |
| PleI | GAGTC | 1 cut(s) | 495 |
| PpsI | GAGTC | 1 cut(s) | 495 |
| Psp6I | CCWGG | 1 cut(s) | 65 |
| PspGI | CCWGG | 1 cut(s) | 65 |
| PspPI | GGNCC | 1 cut(s) | 97 |
| PstI | CTGCAG | 1 cut(s) | 631 |
| SatI | GCNGC | 4 cut(s) | 158, 204, 207, 630 |
| Sau3AI | GATC | 3 cut(s) | 175, 346, 622 |
| Sau96I | GGNCC | 1 cut(s) | 97 |
| SchI | GAGTC | 1 cut(s) | 495 |
| ScrFI | CCNGG | 2 cut(s) | 67, 101 |
| SduI | GDGCHC | 1 cut(s) | 130 |
| SfaNI | GCATC | 2 cut(s) | 257, 288 |
| SfcI | CTRYAG | 1 cut(s) | 627 |
| SinI | GGWCC | 1 cut(s) | 97 |
| SmlI | CTYRAG | 1 cut(s) | 647 |
| SmoI | CTYRAG | 1 cut(s) | 647 |
| Sse9I | AATT | 3 cut(s) | 118, 181, 380 |
| SsiI | CCGC | 2 cut(s) | 270, 430 |
| SspMI | CTAG | 3 cut(s) | 144, 234, 435 |
| StyD4I | CCNGG | 2 cut(s) | 65, 99 |
| StyI | CCWWGG | 1 cut(s) | 227 |
| TaaI | ACNGT | 2 cut(s) | 132, 509 |
| TaiI | ACGT | 1 cut(s) | 94 |
| TaqI | TCGA | 2 cut(s) | 174, 385 |
| TasI | AATT | 3 cut(s) | 118, 181, 380 |
| TfiI | GAWTC | 1 cut(s) | 171 |
| TscAI | CASTG | 3 cut(s) | 135, 535, 582 |
| TseFI | GTSAC | 2 cut(s) | 151, 526 |
| TseI | GCWGC | 4 cut(s) | 157, 203, 206, 629 |
| Tsp45I | GTSAC | 2 cut(s) | 151, 526 |
| TspDTI | ATGAA | 4 cut(s) | 245, 347, 408, 609 |
| TspGWI | ACGGA | 1 cut(s) | 126 |
| TspRI | CASTG | 3 cut(s) | 135, 535, 582 |
| VneI | GTGCAC | 1 cut(s) | 126 |
| VpaK11BI | GGWCC | 1 cut(s) | 97 |
| XbaI | TCTAGA | 1 cut(s) | 434 |
| XspI | CTAG | 3 cut(s) | 144, 234, 435 |