ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 222, 462 |
| AccII | CGCG | 1 cut(s) | 774 |
| AcoI | YGGCCR | 4 cut(s) | 314, 554, 833, 900 |
| AcsI | RAATTY | 1 cut(s) | 164 |
| AcyI | GRCGYC | 1 cut(s) | 882 |
| AfaI | GTAC | 4 cut(s) | 136, 249, 376, 489 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 222, 462, 732 |
| AflIII | ACRYGT | 4 cut(s) | 305, 545, 794, 954 |
| AgsI | TTSAA | 3 cut(s) | 169, 409, 916 |
| AjnI | CCWGG | 1 cut(s) | 725 |
| AluBI | AGCT | 1 cut(s) | 1028 |
| AluI | AGCT | 1 cut(s) | 1028 |
| Alw21I | GWGCWC | 1 cut(s) | 994 |
| Alw26I | GTCTC | 4 cut(s) | 190, 314, 430, 554 |
| Alw44I | GTGCAC | 1 cut(s) | 990 |
| AoxI | GGCC | 8 cut(s) | 208, 314, 448, 554, 613, 833, 900, 1005 |
| ApaLI | GTGCAC | 1 cut(s) | 990 |
| ApeKI | GCWGC | 6 cut(s) | 278, 296, 518, 536, 632, 1028 |
| ApoI | RAATTY | 1 cut(s) | 164 |
| AspLEI | GCGC | 1 cut(s) | 774 |
| AspS9I | GGNCC | 1 cut(s) | 614 |
| AsuHPI | GGTGA | 2 cut(s) | 868, 979 |
| BaeGI | GKGCMC | 1 cut(s) | 994 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 225, 258, 465, 498 |
| BalI | TGGCCA | 1 cut(s) | 835 |
| BanII | GRGCYC | 1 cut(s) | 628 |
| BauI | CACGAG | 1 cut(s) | 621 |
| Bbv12I | GWGCWC | 1 cut(s) | 994 |
| BbvI | GCAGC | 6 cut(s) | 283, 290, 523, 530, 644, 1015 |
| BccI | CCATC | 6 cut(s) | 224, 290, 319, 464, 530, 559 |
| BciT130I | CCWGG | 1 cut(s) | 727 |
| BciVI | GTATCC | 2 cut(s) | 226, 466 |
| BcoDI | GTCTC | 4 cut(s) | 190, 314, 430, 554 |
| BfaI | CTAG | 6 cut(s) | 212, 330, 452, 570, 609, 629 |
| BfmI | CTRYAG | 4 cut(s) | 31, 138, 378, 1029 |
| BfuI | GTATCC | 2 cut(s) | 226, 466 |
| BisI | GCNGC | 6 cut(s) | 279, 297, 519, 537, 633, 1029 |
| BlsI | GCNGC | 6 cut(s) | 280, 298, 520, 538, 634, 1030 |
| BmcAI | AGTACT | 2 cut(s) | 136, 376 |
| Bme1390I | CCNGG | 1 cut(s) | 727 |
| BmgT120I | GGNCC | 1 cut(s) | 614 |
| BmrFI | CCNGG | 1 cut(s) | 727 |
| BmsI | GCATC | 2 cut(s) | 265, 505 |
| BsaHI | GRCGYC | 1 cut(s) | 882 |
| BsaJI | CCNNGG | 7 cut(s) | 7, 66, 205, 317, 445, 557, 726 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 222, 462, 732 |
| Bse118I | RCCGGY | 3 cut(s) | 292, 532, 878 |
| Bse3DI | GCAATG | 1 cut(s) | 642 |
| BseBI | CCWGG | 1 cut(s) | 727 |
| BseDI | CCNNGG | 7 cut(s) | 7, 66, 205, 317, 445, 557, 726 |
| BseGI | GGATG | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 222, 462, 732 |
| BseMI | GCAATG | 1 cut(s) | 642 |
| BseMII | CTCAG | 2 cut(s) | 688, 955 |
| BseRI | GAGGAG | 2 cut(s) | 885, 929 |
| BseSI | GKGCMC | 1 cut(s) | 994 |
| BseXI | GCAGC | 6 cut(s) | 283, 290, 523, 530, 644, 1015 |
| Bsh1236I | CGCG | 1 cut(s) | 774 |
| BshFI | GGCC | 8 cut(s) | 210, 316, 450, 556, 615, 835, 902, 1007 |
| BsiHKAI | GWGCWC | 1 cut(s) | 994 |
| BsiSI | CCGG | 6 cut(s) | 293, 313, 533, 553, 879, 899 |
| BsiWI | CGTACG | 1 cut(s) | 487 |
| BslFI | GGGAC | 1 cut(s) | 930 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 222, 462, 732 |
| BsmAI | GTCTC | 4 cut(s) | 190, 314, 430, 554 |
| BsmFI | GGGAC | 1 cut(s) | 930 |
| BsnI | GGCC | 8 cut(s) | 210, 316, 450, 556, 615, 835, 902, 1007 |
| Bsp1286I | GDGCHC | 2 cut(s) | 628, 994 |
| Bsp143I | GATC | 2 cut(s) | 1033, 1049 |
| Bsp19I | CCATGG | 2 cut(s) | 317, 557 |
| BspANI | GGCC | 8 cut(s) | 210, 316, 450, 556, 615, 835, 902, 1007 |
| BspCNI | CTCAG | 2 cut(s) | 687, 954 |
| BspFNI | CGCG | 1 cut(s) | 774 |
| BspMAI | CTGCAG | 2 cut(s) | 35, 1033 |
| BsrDI | GCAATG | 1 cut(s) | 642 |
| BsrFI | RCCGGY | 3 cut(s) | 292, 532, 878 |
| BssAI | RCCGGY | 3 cut(s) | 292, 532, 878 |
| BssECI | CCNNGG | 7 cut(s) | 7, 66, 205, 317, 445, 557, 726 |
| BssMI | GATC | 2 cut(s) | 1033, 1049 |
| BssNI | GRCGYC | 1 cut(s) | 882 |
| BssSI | CACGAG | 1 cut(s) | 621 |
| BssT1I | CCWWGG | 6 cut(s) | 7, 66, 205, 317, 445, 557 |
| Bst2BI | CACGAG | 1 cut(s) | 621 |
| Bst2UI | CCWGG | 1 cut(s) | 727 |
| Bst4CI | ACNGT | 2 cut(s) | 989, 1022 |
| Bst6I | CTCTTC | 1 cut(s) | 592 |
| BstACI | GRCGYC | 1 cut(s) | 882 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1037 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 2 cut(s) | 674, 941 |
| BstDSI | CCRYGG | 2 cut(s) | 317, 557 |
| BstF5I | GGATG | 1 cut(s) | 15 |
| BstFNI | CGCG | 1 cut(s) | 774 |
| BstHHI | GCGC | 1 cut(s) | 774 |
| BstKTI | GATC | 2 cut(s) | 1036, 1052 |
| BstMAI | GTCTC | 4 cut(s) | 190, 314, 430, 554 |
| BstMBI | GATC | 2 cut(s) | 1033, 1049 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 632, 1037 |
| BstNI | CCWGG | 1 cut(s) | 727 |
| BstNSI | RCATGY | 4 cut(s) | 309, 549, 798, 958 |
| BstSCI | CCNGG | 1 cut(s) | 725 |
| BstSFI | CTRYAG | 4 cut(s) | 31, 138, 378, 1029 |
| BstSLI | GKGCMC | 1 cut(s) | 994 |
| BstUI | CGCG | 1 cut(s) | 774 |
| BstV1I | GCAGC | 6 cut(s) | 283, 290, 523, 530, 644, 1015 |
| BsuI | GTATCC | 2 cut(s) | 226, 466 |
| BsuRI | GGCC | 8 cut(s) | 210, 316, 450, 556, 615, 835, 902, 1007 |
| BtgI | CCRYGG | 2 cut(s) | 317, 557 |
| BtsCI | GGATG | 1 cut(s) | 15 |
| BtsIMutI | CAGTG | 1 cut(s) | 682 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| CfoI | GCGC | 1 cut(s) | 774 |
| Cfr10I | RCCGGY | 3 cut(s) | 292, 532, 878 |
| Cfr13I | GGNCC | 1 cut(s) | 614 |
| CseI | GACGC | 2 cut(s) | 763, 871 |
| Csp6I | GTAC | 4 cut(s) | 135, 248, 375, 488 |
| CviQI | GTAC | 4 cut(s) | 135, 248, 375, 488 |
| DdeI | CTNAG | 2 cut(s) | 674, 941 |
| DpnI | GATC | 2 cut(s) | 1035, 1051 |
| DpnII | GATC | 2 cut(s) | 1033, 1049 |
| EaeI | YGGCCR | 4 cut(s) | 314, 554, 833, 900 |
| Eam1104I | CTCTTC | 1 cut(s) | 592 |
| EarI | CTCTTC | 1 cut(s) | 592 |
| Eco130I | CCWWGG | 6 cut(s) | 7, 66, 205, 317, 445, 557 |
| Eco147I | AGGCCT | 2 cut(s) | 210, 450 |
| Eco24I | GRGCYC | 1 cut(s) | 628 |
| EcoO109I | RGGNCCY | 1 cut(s) | 614 |
| EcoRI | GAATTC | 1 cut(s) | 164 |
| EcoRII | CCWGG | 1 cut(s) | 725 |
| EcoT14I | CCWWGG | 6 cut(s) | 7, 66, 205, 317, 445, 557 |
| EcoT38I | GRGCYC | 1 cut(s) | 628 |
| ErhI | CCWWGG | 6 cut(s) | 7, 66, 205, 317, 445, 557 |
| FaqI | GGGAC | 1 cut(s) | 930 |
| Fnu4HI | GCNGC | 6 cut(s) | 279, 297, 519, 537, 633, 1029 |
| FokI | GGATG | 1 cut(s) | 2 |
| FriOI | GRGCYC | 1 cut(s) | 628 |
| Fsp4HI | GCNGC | 6 cut(s) | 279, 297, 519, 537, 633, 1029 |
| FspBI | CTAG | 6 cut(s) | 212, 330, 452, 570, 609, 629 |
| GlaI | GCGC | 1 cut(s) | 773 |
| GluI | GCNGC | 6 cut(s) | 279, 297, 519, 537, 633, 1029 |
| HaeIII | GGCC | 8 cut(s) | 210, 316, 450, 556, 615, 835, 902, 1007 |
| HapII | CCGG | 6 cut(s) | 293, 313, 533, 553, 879, 899 |
| HgaI | GACGC | 2 cut(s) | 763, 871 |
| HhaI | GCGC | 1 cut(s) | 774 |
| Hin1I | GRCGYC | 1 cut(s) | 882 |
| Hin6I | GCGC | 1 cut(s) | 772 |
| HinP1I | GCGC | 1 cut(s) | 772 |
| HincII | GTYRAC | 2 cut(s) | 244, 484 |
| HindII | GTYRAC | 2 cut(s) | 244, 484 |
| HinfI | GANTC | 8 cut(s) | 143, 383, 405, 672, 702, 737, 928, 970 |
| HpaI | GTTAAC | 2 cut(s) | 244, 484 |
| HpaII | CCGG | 6 cut(s) | 293, 313, 533, 553, 879, 899 |
| HphI | GGTGA | 2 cut(s) | 868, 979 |
| Hpy166II | GTNNAC | 6 cut(s) | 46, 244, 484, 671, 792, 992 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 355, 812, 1047 |
| Hpy188III | TCNNGA | 5 cut(s) | 223, 286, 463, 526, 609 |
| Hpy8I | GTNNAC | 6 cut(s) | 46, 244, 484, 671, 792, 992 |
| Hpy99I | CGWCG | 3 cut(s) | 779, 887, 978 |
| HpyAV | CCTTC | 3 cut(s) | 763, 875, 942 |
| HpyCH4III | ACNGT | 2 cut(s) | 989, 1022 |
| HpyCH4IV | ACGT | 2 cut(s) | 246, 486 |
| HpyCH4V | TGCA | 6 cut(s) | 33, 278, 518, 992, 1031, 1040 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 632, 1037 |
| HpyF3I | CTNAG | 2 cut(s) | 674, 941 |
| HpySE526I | ACGT | 2 cut(s) | 246, 486 |
| Hsp92I | GRCGYC | 1 cut(s) | 882 |
| HspAI | GCGC | 1 cut(s) | 772 |
| KspAI | GTTAAC | 2 cut(s) | 244, 484 |
| Kzo9I | GATC | 2 cut(s) | 1033, 1049 |
| LmnI | GCTCC | 2 cut(s) | 9, 1025 |
| Lsp1109I | GCAGC | 6 cut(s) | 283, 290, 523, 530, 644, 1015 |
| LweI | GCATC | 2 cut(s) | 265, 505 |
| MaeI | CTAG | 6 cut(s) | 212, 330, 452, 570, 609, 629 |
| MaeII | ACGT | 2 cut(s) | 246, 486 |
| MaeIII | GTNAC | 2 cut(s) | 254, 494 |
| MalI | GATC | 2 cut(s) | 1035, 1051 |
| MboI | GATC | 2 cut(s) | 1033, 1049 |
| MboII | GAAGA | 6 cut(s) | 100, 609, 663, 741, 835, 881 |
| MhlI | GDGCHC | 2 cut(s) | 628, 994 |
| MlsI | TGGCCA | 1 cut(s) | 835 |
| MluCI | AATT | 7 cut(s) | 102, 158, 164, 342, 398, 916, 1053 |
| MluNI | TGGCCA | 1 cut(s) | 835 |
| MlyI | GAGTC | 3 cut(s) | 152, 392, 666 |
| Mox20I | TGGCCA | 1 cut(s) | 835 |
| MscI | TGGCCA | 1 cut(s) | 835 |
| MseI | TTAA | 3 cut(s) | 243, 483, 579 |
| MslI | CAYNNNNRTG | 2 cut(s) | 273, 513 |
| Msp20I | TGGCCA | 1 cut(s) | 835 |
| MspI | CCGG | 6 cut(s) | 293, 313, 533, 553, 879, 899 |
| MspR9I | CCNGG | 1 cut(s) | 727 |
| MvaI | CCWGG | 1 cut(s) | 727 |
| MvnI | CGCG | 1 cut(s) | 774 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 632, 1037 |
| NcoI | CCATGG | 2 cut(s) | 317, 557 |
| NdeII | GATC | 2 cut(s) | 1033, 1049 |
| NmeAIII | GCCGAG | 1 cut(s) | 1033 |
| NmuCI | GTSAC | 2 cut(s) | 254, 494 |
| NspI | RCATGY | 4 cut(s) | 309, 549, 798, 958 |
| PceI | AGGCCT | 2 cut(s) | 210, 450 |
| PciI | ACATGT | 4 cut(s) | 305, 545, 794, 954 |
| PfeI | GAWTC | 5 cut(s) | 405, 702, 737, 928, 970 |
| Pfl23II | CGTACG | 1 cut(s) | 487 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 222, 462 |
| PkrI | GCNGC | 6 cut(s) | 280, 298, 520, 538, 634, 1030 |
| PleI | GAGTC | 3 cut(s) | 151, 391, 666 |
| PpsI | GAGTC | 3 cut(s) | 151, 391, 666 |
| PscI | ACATGT | 4 cut(s) | 305, 545, 794, 954 |
| Psp6I | CCWGG | 1 cut(s) | 725 |
| PspGI | CCWGG | 1 cut(s) | 725 |
| PspLI | CGTACG | 1 cut(s) | 487 |
| PspPI | GGNCC | 1 cut(s) | 614 |
| PstI | CTGCAG | 2 cut(s) | 35, 1033 |
| RsaI | GTAC | 4 cut(s) | 136, 249, 376, 489 |
| RsaNI | GTAC | 4 cut(s) | 135, 248, 375, 488 |
| RseI | CAYNNNNRTG | 2 cut(s) | 273, 513 |
| SaqAI | TTAA | 3 cut(s) | 243, 483, 579 |
| SatI | GCNGC | 6 cut(s) | 279, 297, 519, 537, 633, 1029 |
| Sau3AI | GATC | 2 cut(s) | 1033, 1049 |
| Sau96I | GGNCC | 1 cut(s) | 614 |
| ScaI | AGTACT | 2 cut(s) | 136, 376 |
| SchI | GAGTC | 3 cut(s) | 152, 392, 666 |
| ScrFI | CCNGG | 1 cut(s) | 727 |
| SduI | GDGCHC | 2 cut(s) | 628, 994 |
| SetI | ASST | 4 cut(s) | 249, 489, 665, 1030 |
| SfaNI | GCATC | 2 cut(s) | 265, 505 |
| SfcI | CTRYAG | 4 cut(s) | 31, 138, 378, 1029 |
| SgrAI | CRCCGGYG | 1 cut(s) | 878 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 273, 513 |
| Sse9I | AATT | 7 cut(s) | 102, 158, 164, 342, 398, 916, 1053 |
| SseBI | AGGCCT | 2 cut(s) | 210, 450 |
| SspMI | CTAG | 6 cut(s) | 212, 330, 452, 570, 609, 629 |
| StuI | AGGCCT | 2 cut(s) | 210, 450 |
| StyD4I | CCNGG | 1 cut(s) | 725 |
| StyI | CCWWGG | 6 cut(s) | 7, 66, 205, 317, 445, 557 |
| TaaI | ACNGT | 2 cut(s) | 989, 1022 |
| TaiI | ACGT | 2 cut(s) | 249, 489 |
| TaqI | TCGA | 1 cut(s) | 777 |
| TasI | AATT | 7 cut(s) | 102, 158, 164, 342, 398, 916, 1053 |
| TatI | WGTACW | 2 cut(s) | 134, 374 |
| TfiI | GAWTC | 5 cut(s) | 405, 702, 737, 928, 970 |
| Tru1I | TTAA | 3 cut(s) | 243, 483, 579 |
| Tru9I | TTAA | 3 cut(s) | 243, 483, 579 |
| TscAI | CASTG | 1 cut(s) | 682 |
| TseFI | GTSAC | 2 cut(s) | 254, 494 |
| TseI | GCWGC | 6 cut(s) | 278, 296, 518, 536, 632, 1028 |
| Tsp45I | GTSAC | 2 cut(s) | 254, 494 |
| TspDTI | ATGAA | 5 cut(s) | 66, 207, 447, 597, 836 |
| TspGWI | ACGGA | 2 cut(s) | 242, 482 |
| TspRI | CASTG | 1 cut(s) | 682 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 222, 462 |
| VneI | GTGCAC | 1 cut(s) | 990 |
| XapI | RAATTY | 1 cut(s) | 164 |
| XbaI | TCTAGA | 1 cut(s) | 608 |
| XceI | RCATGY | 4 cut(s) | 309, 549, 798, 958 |
| XspI | CTAG | 6 cut(s) | 212, 330, 452, 570, 609, 629 |
| ZrmI | AGTACT | 2 cut(s) | 136, 376 |