ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 363 |
| AccBSI | CCGCTC | 1 cut(s) | 580 |
| AccI | GTMKAC | 1 cut(s) | 72 |
| AccIII | TCCGGA | 1 cut(s) | 694 |
| AciI | CCGC | 2 cut(s) | 65, 580 |
| AclWI | GGATC | 4 cut(s) | 10, 304, 375, 720 |
| AfaI | GTAC | 2 cut(s) | 355, 475 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 100, 363, 409, 579 |
| AflIII | ACRYGT | 1 cut(s) | 254 |
| AgsI | TTSAA | 4 cut(s) | 13, 43, 427, 496 |
| AjnI | CCWGG | 2 cut(s) | 57, 99 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 244, 276 |
| AluBI | AGCT | 3 cut(s) | 347, 416, 545 |
| AluI | AGCT | 3 cut(s) | 347, 416, 545 |
| Alw21I | GWGCWC | 2 cut(s) | 187, 547 |
| Alw26I | GTCTC | 1 cut(s) | 47 |
| AlwI | GGATC | 4 cut(s) | 10, 304, 375, 720 |
| Ama87I | CYCGRG | 1 cut(s) | 761 |
| Aor13HI | TCCGGA | 1 cut(s) | 694 |
| ApeKI | GCWGC | 2 cut(s) | 4, 344 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 518, 550 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 256, 491 |
| AspS9I | GGNCC | 2 cut(s) | 461, 558 |
| AsuHPI | GGTGA | 2 cut(s) | 562, 634 |
| AvaI | CYCGRG | 1 cut(s) | 761 |
| AvaII | GGWCC | 2 cut(s) | 461, 558 |
| BanII | GRGCYC | 1 cut(s) | 547 |
| Bbv12I | GWGCWC | 2 cut(s) | 187, 547 |
| BbvCI | CCTCAGC | 1 cut(s) | 279 |
| BbvI | GCAGC | 2 cut(s) | 16, 356 |
| BccI | CCATC | 2 cut(s) | 164, 405 |
| BciT130I | CCWGG | 2 cut(s) | 59, 101 |
| BciVI | GTATCC | 2 cut(s) | 413, 744 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcoDI | GTCTC | 1 cut(s) | 47 |
| BfaI | CTAG | 4 cut(s) | 96, 122, 633, 680 |
| BfmI | CTRYAG | 2 cut(s) | 31, 342 |
| BfuI | GTATCC | 2 cut(s) | 413, 744 |
| BisI | GCNGC | 3 cut(s) | 5, 345, 581 |
| BlsI | GCNGC | 3 cut(s) | 6, 346, 582 |
| Bme1390I | CCNGG | 2 cut(s) | 59, 101 |
| Bme18I | GGWCC | 2 cut(s) | 461, 558 |
| BmeT110I | CYCGRG | 1 cut(s) | 761 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 558 |
| BmrFI | CCNGG | 2 cut(s) | 59, 101 |
| BmsI | GCATC | 3 cut(s) | 52, 265, 721 |
| BpmI | CTGGAG | 2 cut(s) | 222, 477 |
| Bpu10I | CCTNAGC | 1 cut(s) | 279 |
| BsaBI | GATNNNNATC | 1 cut(s) | 516 |
| BsaI | GGTCTC | 1 cut(s) | 47 |
| BsaJI | CCNNGG | 3 cut(s) | 57, 404, 573 |
| BsaWI | WCCGGW | 1 cut(s) | 694 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 244, 274, 384, 414 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 100, 363, 409, 579 |
| Bse1I | ACTGG | 1 cut(s) | 239 |
| Bse3DI | GCAATG | 1 cut(s) | 667 |
| Bse8I | GATNNNNATC | 1 cut(s) | 516 |
| BseAI | TCCGGA | 1 cut(s) | 694 |
| BseBI | CCWGG | 2 cut(s) | 59, 101 |
| BseDI | CCNNGG | 3 cut(s) | 57, 404, 573 |
| BseGI | GGATG | 1 cut(s) | 67 |
| BseJI | GATNNNNATC | 1 cut(s) | 516 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 100, 363, 409, 579 |
| BseMI | GCAATG | 1 cut(s) | 667 |
| BseMII | CTCAG | 1 cut(s) | 270 |
| BseNI | ACTGG | 1 cut(s) | 239 |
| BseRI | GAGGAG | 2 cut(s) | 456, 755 |
| BseXI | GCAGC | 2 cut(s) | 16, 356 |
| Bsh1285I | CGRYCG | 1 cut(s) | 69 |
| BsiEI | CGRYCG | 1 cut(s) | 69 |
| BsiHKAI | GWGCWC | 2 cut(s) | 187, 547 |
| BsiHKCI | CYCGRG | 1 cut(s) | 761 |
| BsiSI | CCGG | 1 cut(s) | 695 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 100, 363, 409, 579 |
| BsmAI | GTCTC | 1 cut(s) | 47 |
| Bso31I | GGTCTC | 1 cut(s) | 47 |
| BsoBI | CYCGRG | 1 cut(s) | 761 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 547 |
| Bsp13I | TCCGGA | 1 cut(s) | 694 |
| Bsp143I | GATC | 8 cut(s) | 15, 296, 322, 367, 517, 586, 664, 725 |
| BspACI | CCGC | 2 cut(s) | 65, 580 |
| BspCNI | CTCAG | 1 cut(s) | 271 |
| BspEI | TCCGGA | 1 cut(s) | 694 |
| BspMAI | CTGCAG | 2 cut(s) | 35, 346 |
| BspPI | GGATC | 4 cut(s) | 10, 304, 375, 720 |
| BspTNI | GGTCTC | 1 cut(s) | 47 |
| BsrBI | CCGCTC | 1 cut(s) | 580 |
| BsrDI | GCAATG | 1 cut(s) | 667 |
| BsrI | ACTGG | 1 cut(s) | 239 |
| BssECI | CCNNGG | 3 cut(s) | 57, 404, 573 |
| BssMI | GATC | 8 cut(s) | 15, 296, 322, 367, 517, 586, 664, 725 |
| BssT1I | CCWWGG | 2 cut(s) | 404, 573 |
| Bst2UI | CCWGG | 2 cut(s) | 59, 101 |
| Bst4CI | ACNGT | 4 cut(s) | 148, 213, 566, 604 |
| BstDEI | CTNAG | 4 cut(s) | 279, 437, 653, 771 |
| BstF5I | GGATG | 1 cut(s) | 67 |
| BstKTI | GATC | 8 cut(s) | 18, 299, 325, 370, 520, 589, 667, 728 |
| BstMAI | GTCTC | 1 cut(s) | 47 |
| BstMBI | GATC | 8 cut(s) | 15, 296, 322, 367, 517, 586, 664, 725 |
| BstMCI | CGRYCG | 1 cut(s) | 69 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 344 |
| BstNI | CCWGG | 2 cut(s) | 59, 101 |
| BstSCI | CCNGG | 2 cut(s) | 57, 99 |
| BstSFI | CTRYAG | 2 cut(s) | 31, 342 |
| BstV1I | GCAGC | 2 cut(s) | 16, 356 |
| BstX2I | RGATCY | 3 cut(s) | 15, 296, 367 |
| BstYI | RGATCY | 3 cut(s) | 15, 296, 367 |
| BsuI | GTATCC | 2 cut(s) | 413, 744 |
| BtgZI | GCGATG | 1 cut(s) | 698 |
| BtsCI | GGATG | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 558 |
| CseI | GACGC | 1 cut(s) | 140 |
| Csp6I | GTAC | 2 cut(s) | 354, 474 |
| CviAII | CATG | 4 cut(s) | 443, 529, 555, 609 |
| CviQI | GTAC | 2 cut(s) | 354, 474 |
| DdeI | CTNAG | 4 cut(s) | 279, 437, 653, 771 |
| DpnI | GATC | 8 cut(s) | 17, 298, 324, 369, 519, 588, 666, 727 |
| DpnII | GATC | 8 cut(s) | 15, 296, 322, 367, 517, 586, 664, 725 |
| Ecl136II | GAGCTC | 1 cut(s) | 545 |
| Eco130I | CCWWGG | 2 cut(s) | 404, 573 |
| Eco24I | GRGCYC | 1 cut(s) | 547 |
| Eco31I | GGTCTC | 1 cut(s) | 47 |
| Eco47I | GGWCC | 2 cut(s) | 461, 558 |
| Eco53kI | GAGCTC | 1 cut(s) | 545 |
| Eco88I | CYCGRG | 1 cut(s) | 761 |
| EcoICRI | GAGCTC | 1 cut(s) | 545 |
| EcoO109I | RGGNCCY | 1 cut(s) | 461 |
| EcoRII | CCWGG | 2 cut(s) | 57, 99 |
| EcoT14I | CCWWGG | 2 cut(s) | 404, 573 |
| EcoT38I | GRGCYC | 1 cut(s) | 547 |
| ErhI | CCWWGG | 2 cut(s) | 404, 573 |
| FaeI | CATG | 4 cut(s) | 446, 532, 558, 612 |
| FatI | CATG | 4 cut(s) | 442, 528, 554, 608 |
| FauNDI | CATATG | 1 cut(s) | 483 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| FblI | GTMKAC | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 345, 581 |
| FokI | GGATG | 1 cut(s) | 74 |
| FriOI | GRGCYC | 1 cut(s) | 547 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 345, 581 |
| FspBI | CTAG | 4 cut(s) | 96, 122, 633, 680 |
| GluI | GCNGC | 3 cut(s) | 5, 345, 581 |
| GsuI | CTGGAG | 2 cut(s) | 222, 477 |
| HapII | CCGG | 1 cut(s) | 695 |
| HgaI | GACGC | 1 cut(s) | 140 |
| Hin1II | CATG | 4 cut(s) | 446, 532, 558, 612 |
| HincII | GTYRAC | 2 cut(s) | 73, 141 |
| HindII | GTYRAC | 2 cut(s) | 73, 141 |
| HinfI | GANTC | 4 cut(s) | 174, 333, 492, 698 |
| HpaI | GTTAAC | 1 cut(s) | 141 |
| HpaII | CCGG | 1 cut(s) | 695 |
| HphI | GGTGA | 2 cut(s) | 562, 634 |
| Hpy166II | GTNNAC | 3 cut(s) | 73, 141, 209 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 522, 664 |
| Hpy188III | TCNNGA | 6 cut(s) | 13, 82, 155, 456, 695, 761 |
| Hpy8I | GTNNAC | 3 cut(s) | 73, 141, 209 |
| Hpy99I | CGWCG | 2 cut(s) | 74, 156 |
| HpyAV | CCTTC | 1 cut(s) | 383 |
| HpyCH4III | ACNGT | 4 cut(s) | 148, 213, 566, 604 |
| HpyCH4IV | ACGT | 1 cut(s) | 254 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 33, 344, 712 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 344 |
| HpyF3I | CTNAG | 4 cut(s) | 279, 437, 653, 771 |
| HpySE526I | ACGT | 1 cut(s) | 254 |
| Hsp92II | CATG | 4 cut(s) | 446, 532, 558, 612 |
| Kpn2I | TCCGGA | 1 cut(s) | 694 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| KspAI | GTTAAC | 1 cut(s) | 141 |
| Kzo9I | GATC | 8 cut(s) | 15, 296, 322, 367, 517, 586, 664, 725 |
| LmnI | GCTCC | 3 cut(s) | 190, 542, 577 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 356 |
| LweI | GCATC | 3 cut(s) | 52, 265, 721 |
| MaeI | CTAG | 4 cut(s) | 96, 122, 633, 680 |
| MaeII | ACGT | 1 cut(s) | 254 |
| MaeIII | GTNAC | 1 cut(s) | 656 |
| MalI | GATC | 8 cut(s) | 17, 298, 324, 369, 519, 588, 666, 727 |
| MbiI | CCGCTC | 1 cut(s) | 580 |
| MboI | GATC | 8 cut(s) | 15, 296, 322, 367, 517, 586, 664, 725 |
| MboII | GAAGA | 1 cut(s) | 209 |
| MflI | RGATCY | 3 cut(s) | 15, 296, 367 |
| MhlI | GDGCHC | 2 cut(s) | 187, 547 |
| MluCI | AATT | 3 cut(s) | 8, 159, 617 |
| MlyI | GAGTC | 2 cut(s) | 183, 342 |
| MmeI | TCCRAC | 2 cut(s) | 520, 585 |
| MroI | TCCGGA | 1 cut(s) | 694 |
| MroXI | GAANNNNTTC | 2 cut(s) | 256, 491 |
| MseI | TTAA | 1 cut(s) | 140 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspI | CCGG | 1 cut(s) | 695 |
| MspR9I | CCNGG | 2 cut(s) | 59, 101 |
| MvaI | CCWGG | 2 cut(s) | 59, 101 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 344 |
| NdeI | CATATG | 1 cut(s) | 483 |
| NdeII | GATC | 8 cut(s) | 15, 296, 322, 367, 517, 586, 664, 725 |
| NlaIII | CATG | 4 cut(s) | 446, 532, 558, 612 |
| NmuCI | GTSAC | 1 cut(s) | 656 |
| PaeR7I | CTCGAG | 1 cut(s) | 761 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 721 |
| PdmI | GAANNNNTTC | 2 cut(s) | 256, 491 |
| PfeI | GAWTC | 2 cut(s) | 492, 698 |
| PflFI | GACNNNGTC | 2 cut(s) | 77, 594 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 363 |
| PkrI | GCNGC | 3 cut(s) | 6, 346, 582 |
| PleI | GAGTC | 2 cut(s) | 182, 341 |
| PpsI | GAGTC | 2 cut(s) | 182, 341 |
| PpuMI | RGGWCCY | 1 cut(s) | 461 |
| Psp124BI | GAGCTC | 1 cut(s) | 547 |
| Psp5II | RGGWCCY | 1 cut(s) | 461 |
| Psp6I | CCWGG | 2 cut(s) | 57, 99 |
| PspGI | CCWGG | 2 cut(s) | 57, 99 |
| PspPI | GGNCC | 2 cut(s) | 461, 558 |
| PspPPI | RGGWCCY | 1 cut(s) | 461 |
| PstI | CTGCAG | 2 cut(s) | 35, 346 |
| PsuI | RGATCY | 3 cut(s) | 15, 296, 367 |
| PsyI | GACNNNGTC | 2 cut(s) | 77, 594 |
| RsaI | GTAC | 2 cut(s) | 355, 475 |
| RsaNI | GTAC | 2 cut(s) | 354, 474 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SacI | GAGCTC | 1 cut(s) | 547 |
| SalI | GTCGAC | 1 cut(s) | 71 |
| SaqAI | TTAA | 1 cut(s) | 140 |
| SatI | GCNGC | 3 cut(s) | 5, 345, 581 |
| Sau3AI | GATC | 8 cut(s) | 15, 296, 322, 367, 517, 586, 664, 725 |
| Sau96I | GGNCC | 2 cut(s) | 461, 558 |
| SchI | GAGTC | 2 cut(s) | 183, 342 |
| ScrFI | CCNGG | 2 cut(s) | 59, 101 |
| SduI | GDGCHC | 2 cut(s) | 187, 547 |
| SfaNI | GCATC | 3 cut(s) | 52, 265, 721 |
| SfcI | CTRYAG | 2 cut(s) | 31, 342 |
| Sfr274I | CTCGAG | 1 cut(s) | 761 |
| SinI | GGWCC | 2 cut(s) | 461, 558 |
| SlaI | CTCGAG | 1 cut(s) | 761 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 1 cut(s) | 761 |
| SmoI | CTYRAG | 1 cut(s) | 761 |
| Sse9I | AATT | 3 cut(s) | 8, 159, 617 |
| SsiI | CCGC | 2 cut(s) | 65, 580 |
| SspMI | CTAG | 4 cut(s) | 96, 122, 633, 680 |
| SstI | GAGCTC | 1 cut(s) | 547 |
| StyD4I | CCNGG | 2 cut(s) | 57, 99 |
| StyI | CCWWGG | 2 cut(s) | 404, 573 |
| TaaI | ACNGT | 4 cut(s) | 148, 213, 566, 604 |
| TaiI | ACGT | 1 cut(s) | 257 |
| TaqI | TCGA | 8 cut(s) | 72, 250, 376, 547, 589, 724, 738, 762 |
| TasI | AATT | 3 cut(s) | 8, 159, 617 |
| TatI | WGTACW | 1 cut(s) | 473 |
| TauI | GCSGC | 1 cut(s) | 583 |
| TfiI | GAWTC | 2 cut(s) | 492, 698 |
| Tru1I | TTAA | 1 cut(s) | 140 |
| Tru9I | TTAA | 1 cut(s) | 140 |
| TseFI | GTSAC | 1 cut(s) | 656 |
| TseI | GCWGC | 2 cut(s) | 4, 344 |
| Tsp45I | GTSAC | 1 cut(s) | 656 |
| TspDTI | ATGAA | 4 cut(s) | 210, 246, 500, 597 |
| Tth111I | GACNNNGTC | 2 cut(s) | 77, 594 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 363 |
| VpaK11BI | GGWCC | 2 cut(s) | 461, 558 |
| XhoI | CTCGAG | 1 cut(s) | 761 |
| XmiI | GTMKAC | 1 cut(s) | 72 |
| XmnI | GAANNNNTTC | 2 cut(s) | 256, 491 |
| XspI | CTAG | 4 cut(s) | 96, 122, 633, 680 |