ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 291 |
| AcuI | CTGAAG | 2 cut(s) | 437, 584 |
| AcvI | CACGTG | 1 cut(s) | 255 |
| AcyI | GRCGYC | 1 cut(s) | 201 |
| AfaI | GTAC | 2 cut(s) | 135, 511 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 187 |
| AgsI | TTSAA | 4 cut(s) | 28, 127, 416, 440 |
| AjnI | CCWGG | 2 cut(s) | 308, 394 |
| AluBI | AGCT | 4 cut(s) | 70, 299, 446, 587 |
| AluI | AGCT | 4 cut(s) | 70, 299, 446, 587 |
| Alw21I | GWGCWC | 1 cut(s) | 72 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 407 |
| AoxI | GGCC | 2 cut(s) | 207, 397 |
| ApeKI | GCWGC | 2 cut(s) | 382, 515 |
| AspS9I | GGNCC | 1 cut(s) | 398 |
| AsuHPI | GGTGA | 3 cut(s) | 236, 254, 335 |
| BaeGI | GKGCMC | 1 cut(s) | 330 |
| BanI | GGYRCC | 1 cut(s) | 291 |
| BanII | GRGCYC | 1 cut(s) | 72 |
| BbrPI | CACGTG | 1 cut(s) | 255 |
| BbsI | GAAGAC | 2 cut(s) | 92, 578 |
| Bbv12I | GWGCWC | 1 cut(s) | 72 |
| BbvI | GCAGC | 2 cut(s) | 369, 502 |
| BccI | CCATC | 1 cut(s) | 399 |
| BceAI | ACGGC | 1 cut(s) | 188 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 176, 210 |
| BciT130I | CCWGG | 2 cut(s) | 310, 396 |
| BfaI | CTAG | 1 cut(s) | 296 |
| BglII | AGATCT | 1 cut(s) | 314 |
| BisI | GCNGC | 2 cut(s) | 383, 516 |
| BlsI | GCNGC | 2 cut(s) | 384, 517 |
| Bme1390I | CCNGG | 2 cut(s) | 310, 396 |
| BmgT120I | GGNCC | 1 cut(s) | 398 |
| BmiI | GGNNCC | 1 cut(s) | 293 |
| BmrFI | CCNGG | 2 cut(s) | 310, 396 |
| BmsI | GCATC | 1 cut(s) | 40 |
| BpiI | GAAGAC | 2 cut(s) | 92, 578 |
| BpmI | CTGGAG | 1 cut(s) | 331 |
| BsaAI | YACGTR | 1 cut(s) | 255 |
| BsaHI | GRCGYC | 1 cut(s) | 201 |
| BsaJI | CCNNGG | 2 cut(s) | 104, 204 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 187 |
| Bse1I | ACTGG | 1 cut(s) | 293 |
| BseBI | CCWGG | 2 cut(s) | 310, 396 |
| BseDI | CCNNGG | 2 cut(s) | 104, 204 |
| BseGI | GGATG | 1 cut(s) | 391 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 187 |
| BseMII | CTCAG | 3 cut(s) | 97, 485, 597 |
| BseNI | ACTGG | 1 cut(s) | 293 |
| BseSI | GKGCMC | 1 cut(s) | 330 |
| BseXI | GCAGC | 2 cut(s) | 369, 502 |
| BseYI | CCCAGC | 1 cut(s) | 400 |
| BshFI | GGCC | 2 cut(s) | 209, 399 |
| BshNI | GGYRCC | 1 cut(s) | 291 |
| BsiHKAI | GWGCWC | 1 cut(s) | 72 |
| BslFI | GGGAC | 2 cut(s) | 134, 212 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 187 |
| BsmFI | GGGAC | 2 cut(s) | 134, 212 |
| BsmI | GAATGC | 2 cut(s) | 34, 189 |
| BsnI | GGCC | 2 cut(s) | 209, 399 |
| Bsp1286I | GDGCHC | 2 cut(s) | 72, 330 |
| Bsp143I | GATC | 2 cut(s) | 314, 474 |
| Bsp19I | CCATGG | 1 cut(s) | 104 |
| BspANI | GGCC | 2 cut(s) | 209, 399 |
| BspCNI | CTCAG | 3 cut(s) | 96, 484, 596 |
| BspLI | GGNNCC | 1 cut(s) | 293 |
| BspT107I | GGYRCC | 1 cut(s) | 291 |
| BsrI | ACTGG | 1 cut(s) | 293 |
| BssECI | CCNNGG | 2 cut(s) | 104, 204 |
| BssMI | GATC | 2 cut(s) | 314, 474 |
| BssNI | GRCGYC | 1 cut(s) | 201 |
| BssT1I | CCWWGG | 1 cut(s) | 104 |
| Bst2UI | CCWGG | 2 cut(s) | 310, 396 |
| BstACI | GRCGYC | 1 cut(s) | 201 |
| BstBAI | YACGTR | 1 cut(s) | 255 |
| BstDEI | CTNAG | 3 cut(s) | 83, 471, 583 |
| BstDSI | CCRYGG | 2 cut(s) | 104, 204 |
| BstF5I | GGATG | 1 cut(s) | 391 |
| BstKTI | GATC | 2 cut(s) | 317, 477 |
| BstMBI | GATC | 2 cut(s) | 314, 474 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 524 |
| BstNI | CCWGG | 2 cut(s) | 310, 396 |
| BstSCI | CCNGG | 2 cut(s) | 308, 394 |
| BstSLI | GKGCMC | 1 cut(s) | 330 |
| BstV1I | GCAGC | 2 cut(s) | 369, 502 |
| BstV2I | GAAGAC | 2 cut(s) | 92, 578 |
| BstX2I | RGATCY | 1 cut(s) | 314 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 255 |
| BstYI | RGATCY | 1 cut(s) | 314 |
| BsuRI | GGCC | 2 cut(s) | 209, 399 |
| BtgI | CCRYGG | 2 cut(s) | 104, 204 |
| BtsCI | GGATG | 1 cut(s) | 391 |
| BtsIMutI | CAGTG | 1 cut(s) | 91 |
| CaiI | CAGNNNCTG | 1 cut(s) | 407 |
| Cfr13I | GGNCC | 1 cut(s) | 398 |
| CseI | GACGC | 1 cut(s) | 209 |
| Csp6I | GTAC | 2 cut(s) | 134, 510 |
| CviAII | CATG | 1 cut(s) | 105 |
| CviQI | GTAC | 2 cut(s) | 134, 510 |
| DdeI | CTNAG | 3 cut(s) | 83, 471, 583 |
| DpnI | GATC | 2 cut(s) | 316, 476 |
| DpnII | GATC | 2 cut(s) | 314, 474 |
| DraI | TTTAAA | 1 cut(s) | 484 |
| Ecl136II | GAGCTC | 1 cut(s) | 70 |
| Eco130I | CCWWGG | 1 cut(s) | 104 |
| Eco24I | GRGCYC | 1 cut(s) | 72 |
| Eco53kI | GAGCTC | 1 cut(s) | 70 |
| Eco57I | CTGAAG | 2 cut(s) | 437, 584 |
| Eco72I | CACGTG | 1 cut(s) | 255 |
| EcoICRI | GAGCTC | 1 cut(s) | 70 |
| EcoRII | CCWGG | 2 cut(s) | 308, 394 |
| EcoT14I | CCWWGG | 1 cut(s) | 104 |
| EcoT38I | GRGCYC | 1 cut(s) | 72 |
| ErhI | CCWWGG | 1 cut(s) | 104 |
| FaeI | CATG | 1 cut(s) | 108 |
| FaiI | YATR | 7 cut(s) | 45, 106, 147, 171, 364, 520, 522 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 435, 467 |
| FaqI | GGGAC | 2 cut(s) | 134, 212 |
| FatI | CATG | 1 cut(s) | 104 |
| Fnu4HI | GCNGC | 2 cut(s) | 383, 516 |
| FokI | GGATG | 1 cut(s) | 378 |
| FriOI | GRGCYC | 1 cut(s) | 72 |
| Fsp4HI | GCNGC | 2 cut(s) | 383, 516 |
| FspBI | CTAG | 1 cut(s) | 296 |
| GluI | GCNGC | 2 cut(s) | 383, 516 |
| GsaI | CCCAGC | 1 cut(s) | 404 |
| GsuI | CTGGAG | 1 cut(s) | 331 |
| HaeIII | GGCC | 2 cut(s) | 209, 399 |
| HgaI | GACGC | 1 cut(s) | 209 |
| Hin1I | GRCGYC | 1 cut(s) | 201 |
| Hin1II | CATG | 1 cut(s) | 108 |
| HindIII | AAGCTT | 1 cut(s) | 444 |
| HphI | GGTGA | 3 cut(s) | 236, 254, 335 |
| Hpy188I | TCNGA | 1 cut(s) | 474 |
| Hpy188III | TCNNGA | 2 cut(s) | 180, 197 |
| HpyAV | CCTTC | 2 cut(s) | 57, 328 |
| HpyCH4IV | ACGT | 2 cut(s) | 76, 254 |
| HpyCH4V | TGCA | 3 cut(s) | 187, 385, 518 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 524 |
| HpyF3I | CTNAG | 3 cut(s) | 83, 471, 583 |
| HpySE526I | ACGT | 2 cut(s) | 76, 254 |
| Hsp92I | GRCGYC | 1 cut(s) | 201 |
| Hsp92II | CATG | 1 cut(s) | 108 |
| Kzo9I | GATC | 2 cut(s) | 314, 474 |
| LmnI | GCTCC | 1 cut(s) | 67 |
| LpnPI | CCDG | 9 cut(s) | 173, 206, 274, 295, 322, 381, 408, 414, 418 |
| Lsp1109I | GCAGC | 2 cut(s) | 369, 502 |
| LweI | GCATC | 1 cut(s) | 40 |
| MaeI | CTAG | 1 cut(s) | 296 |
| MaeII | ACGT | 2 cut(s) | 76, 254 |
| MaeIII | GTNAC | 1 cut(s) | 224 |
| MalI | GATC | 2 cut(s) | 316, 476 |
| MboI | GATC | 2 cut(s) | 314, 474 |
| MboII | GAAGA | 4 cut(s) | 92, 362, 452, 583 |
| MflI | RGATCY | 1 cut(s) | 314 |
| MhlI | GDGCHC | 2 cut(s) | 72, 330 |
| MluCI | AATT | 6 cut(s) | 9, 93, 172, 262, 497, 542 |
| MmeI | TCCRAC | 1 cut(s) | 40 |
| MnlI | CCTC | 5 cut(s) | 124, 187, 370, 480, 589 |
| MseI | TTAA | 4 cut(s) | 92, 356, 483, 613 |
| MslI | CAYNNNNRTG | 2 cut(s) | 48, 253 |
| MspR9I | CCNGG | 2 cut(s) | 310, 396 |
| Mva1269I | GAATGC | 2 cut(s) | 34, 189 |
| MvaI | CCWGG | 2 cut(s) | 310, 396 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 524 |
| NcoI | CCATGG | 1 cut(s) | 104 |
| NdeII | GATC | 2 cut(s) | 314, 474 |
| NlaIII | CATG | 1 cut(s) | 108 |
| NlaIV | GGNNCC | 1 cut(s) | 293 |
| NmuCI | GTSAC | 1 cut(s) | 224 |
| PctI | GAATGC | 2 cut(s) | 34, 189 |
| PkrI | GCNGC | 2 cut(s) | 384, 517 |
| PmaCI | CACGTG | 1 cut(s) | 255 |
| PmlI | CACGTG | 1 cut(s) | 255 |
| Ppu21I | YACGTR | 1 cut(s) | 255 |
| Psp124BI | GAGCTC | 1 cut(s) | 72 |
| Psp6I | CCWGG | 2 cut(s) | 308, 394 |
| PspCI | CACGTG | 1 cut(s) | 255 |
| PspFI | CCCAGC | 1 cut(s) | 400 |
| PspGI | CCWGG | 2 cut(s) | 308, 394 |
| PspN4I | GGNNCC | 1 cut(s) | 293 |
| PspPI | GGNCC | 1 cut(s) | 398 |
| PstNI | CAGNNNCTG | 1 cut(s) | 407 |
| PsuI | RGATCY | 1 cut(s) | 314 |
| RsaI | GTAC | 2 cut(s) | 135, 511 |
| RsaNI | GTAC | 2 cut(s) | 134, 510 |
| RseI | CAYNNNNRTG | 2 cut(s) | 48, 253 |
| SacI | GAGCTC | 1 cut(s) | 72 |
| SaqAI | TTAA | 4 cut(s) | 92, 356, 483, 613 |
| SatI | GCNGC | 2 cut(s) | 383, 516 |
| Sau3AI | GATC | 2 cut(s) | 314, 474 |
| Sau96I | GGNCC | 1 cut(s) | 398 |
| ScrFI | CCNGG | 2 cut(s) | 310, 396 |
| SduI | GDGCHC | 2 cut(s) | 72, 330 |
| SfaNI | GCATC | 1 cut(s) | 40 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 48, 253 |
| Sse9I | AATT | 6 cut(s) | 9, 93, 172, 262, 497, 542 |
| SspMI | CTAG | 1 cut(s) | 296 |
| SstI | GAGCTC | 1 cut(s) | 72 |
| StyD4I | CCNGG | 2 cut(s) | 308, 394 |
| StyI | CCWWGG | 1 cut(s) | 104 |
| TaiI | ACGT | 2 cut(s) | 79, 257 |
| TaqI | TCGA | 2 cut(s) | 266, 332 |
| TasI | AATT | 6 cut(s) | 9, 93, 172, 262, 497, 542 |
| Tru1I | TTAA | 4 cut(s) | 92, 356, 483, 613 |
| Tru9I | TTAA | 4 cut(s) | 92, 356, 483, 613 |
| TscAI | CASTG | 1 cut(s) | 91 |
| TseFI | GTSAC | 1 cut(s) | 224 |
| TseI | GCWGC | 2 cut(s) | 382, 515 |
| Tsp45I | GTSAC | 1 cut(s) | 224 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 158, 162 |
| TspRI | CASTG | 1 cut(s) | 91 |
| XspI | CTAG | 1 cut(s) | 296 |