ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 397 |
| AciI | CCGC | 2 cut(s) | 273, 397 |
| AcuI | CTGAAG | 1 cut(s) | 260 |
| AfeI | AGCGCT | 1 cut(s) | 473 |
| AgsI | TTSAA | 1 cut(s) | 293 |
| AhlI | ACTAGT | 1 cut(s) | 176 |
| AluBI | AGCT | 1 cut(s) | 297 |
| AluI | AGCT | 1 cut(s) | 297 |
| Alw21I | GWGCWC | 1 cut(s) | 84 |
| Aor51HI | AGCGCT | 1 cut(s) | 473 |
| ApeKI | GCWGC | 2 cut(s) | 449, 469 |
| AspLEI | GCGC | 1 cut(s) | 474 |
| AspS9I | GGNCC | 1 cut(s) | 270 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AsuNHI | GCTAGC | 1 cut(s) | 209 |
| AvaII | GGWCC | 1 cut(s) | 270 |
| Bbv12I | GWGCWC | 1 cut(s) | 84 |
| BbvI | GCAGC | 2 cut(s) | 461, 481 |
| BccI | CCATC | 1 cut(s) | 149 |
| BclI | TGATCA | 1 cut(s) | 313 |
| BcuI | ACTAGT | 1 cut(s) | 176 |
| BfaI | CTAG | 3 cut(s) | 177, 210, 276 |
| BfmI | CTRYAG | 1 cut(s) | 401 |
| BfoI | RGCGCY | 1 cut(s) | 475 |
| BisI | GCNGC | 3 cut(s) | 398, 450, 470 |
| BlpI | GCTNAGC | 1 cut(s) | 393 |
| BlsI | GCNGC | 3 cut(s) | 399, 451, 471 |
| Bme18I | GGWCC | 1 cut(s) | 270 |
| BmgT120I | GGNCC | 1 cut(s) | 270 |
| BmsI | GCATC | 2 cut(s) | 328, 487 |
| BmtI | GCTAGC | 1 cut(s) | 213 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 393 |
| Bsa29I | ATCGAT | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 1 cut(s) | 437 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bse3DI | GCAATG | 1 cut(s) | 357 |
| BseCI | ATCGAT | 1 cut(s) | 138 |
| BseDI | CCNNGG | 1 cut(s) | 437 |
| BseGI | GGATG | 2 cut(s) | 160, 427 |
| BseMI | GCAATG | 1 cut(s) | 357 |
| BseMII | CTCAG | 2 cut(s) | 384, 492 |
| BseRI | GAGGAG | 2 cut(s) | 84, 361 |
| BseXI | GCAGC | 2 cut(s) | 461, 481 |
| BshVI | ATCGAT | 1 cut(s) | 138 |
| BsiHKAI | GWGCWC | 1 cut(s) | 84 |
| BsiSI | CCGG | 1 cut(s) | 194 |
| Bsp1286I | GDGCHC | 1 cut(s) | 84 |
| Bsp143I | GATC | 4 cut(s) | 214, 235, 250, 313 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 393 |
| BspACI | CCGC | 2 cut(s) | 273, 397 |
| BspCNI | CTCAG | 2 cut(s) | 385, 493 |
| BspDI | ATCGAT | 1 cut(s) | 138 |
| BspOI | GCTAGC | 1 cut(s) | 213 |
| BsrBI | CCGCTC | 1 cut(s) | 397 |
| BsrDI | GCAATG | 1 cut(s) | 357 |
| BssECI | CCNNGG | 1 cut(s) | 437 |
| BssMI | GATC | 4 cut(s) | 214, 235, 250, 313 |
| BssT1I | CCWWGG | 1 cut(s) | 437 |
| Bst4CI | ACNGT | 3 cut(s) | 188, 202, 384 |
| BstC8I | GCNNGC | 1 cut(s) | 211 |
| BstDEI | CTNAG | 2 cut(s) | 393, 501 |
| BstF5I | GGATG | 2 cut(s) | 160, 427 |
| BstH2I | RGCGCY | 1 cut(s) | 475 |
| BstHHI | GCGC | 1 cut(s) | 474 |
| BstKTI | GATC | 4 cut(s) | 217, 238, 253, 316 |
| BstMBI | GATC | 4 cut(s) | 214, 235, 250, 313 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 347, 458 |
| BstSFI | CTRYAG | 1 cut(s) | 401 |
| BstV1I | GCAGC | 2 cut(s) | 461, 481 |
| Bsu15I | ATCGAT | 1 cut(s) | 138 |
| BsuTUI | ATCGAT | 1 cut(s) | 138 |
| BtsCI | GGATG | 2 cut(s) | 160, 427 |
| BtsIMutI | CAGTG | 2 cut(s) | 323, 452 |
| Cac8I | GCNNGC | 1 cut(s) | 211 |
| CfoI | GCGC | 1 cut(s) | 474 |
| Cfr13I | GGNCC | 1 cut(s) | 270 |
| ClaI | ATCGAT | 1 cut(s) | 138 |
| CviAII | CATG | 1 cut(s) | 342 |
| CviJI | RGCY | 6 cut(s) | 99, 197, 209, 297, 325, 400 |
| CviKI_1 | RGCY | 6 cut(s) | 99, 197, 209, 297, 325, 400 |
| DdeI | CTNAG | 2 cut(s) | 393, 501 |
| DpnI | GATC | 4 cut(s) | 216, 237, 252, 315 |
| DpnII | GATC | 4 cut(s) | 214, 235, 250, 313 |
| Eco130I | CCWWGG | 1 cut(s) | 437 |
| Eco47I | GGWCC | 1 cut(s) | 270 |
| Eco47III | AGCGCT | 1 cut(s) | 473 |
| Eco57I | CTGAAG | 1 cut(s) | 260 |
| EcoT14I | CCWWGG | 1 cut(s) | 437 |
| EcoT22I | ATGCAT | 1 cut(s) | 343 |
| ErhI | CCWWGG | 1 cut(s) | 437 |
| FaeI | CATG | 1 cut(s) | 345 |
| FaiI | YATR | 7 cut(s) | 13, 30, 39, 88, 149, 343, 432 |
| FatI | CATG | 1 cut(s) | 341 |
| FbaI | TGATCA | 1 cut(s) | 313 |
| Fnu4HI | GCNGC | 3 cut(s) | 398, 450, 470 |
| FokI | GGATG | 2 cut(s) | 167, 434 |
| Fsp4HI | GCNGC | 3 cut(s) | 398, 450, 470 |
| FspBI | CTAG | 3 cut(s) | 177, 210, 276 |
| GlaI | GCGC | 1 cut(s) | 473 |
| GluI | GCNGC | 3 cut(s) | 398, 450, 470 |
| HaeII | RGCGCY | 1 cut(s) | 475 |
| HapII | CCGG | 1 cut(s) | 194 |
| HhaI | GCGC | 1 cut(s) | 474 |
| Hin1II | CATG | 1 cut(s) | 345 |
| Hin6I | GCGC | 1 cut(s) | 472 |
| HinP1I | GCGC | 1 cut(s) | 472 |
| HincII | GTYRAC | 1 cut(s) | 109 |
| HindII | GTYRAC | 1 cut(s) | 109 |
| HindIII | AAGCTT | 1 cut(s) | 295 |
| HinfI | GANTC | 3 cut(s) | 119, 356, 412 |
| HpaII | CCGG | 1 cut(s) | 194 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 2 cut(s) | 20, 109 |
| Hpy188I | TCNGA | 4 cut(s) | 240, 361, 417, 496 |
| Hpy8I | GTNNAC | 2 cut(s) | 20, 109 |
| HpyAV | CCTTC | 4 cut(s) | 58, 89, 235, 412 |
| HpyCH4III | ACNGT | 3 cut(s) | 188, 202, 384 |
| HpyCH4V | TGCA | 3 cut(s) | 341, 449, 469 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 347, 458 |
| HpyF3I | CTNAG | 2 cut(s) | 393, 501 |
| Hsp92II | CATG | 1 cut(s) | 345 |
| HspAI | GCGC | 1 cut(s) | 472 |
| Ksp22I | TGATCA | 1 cut(s) | 313 |
| Kzo9I | GATC | 4 cut(s) | 214, 235, 250, 313 |
| LpnPI | CCDG | 2 cut(s) | 207, 389 |
| Lsp1109I | GCAGC | 2 cut(s) | 461, 481 |
| LweI | GCATC | 2 cut(s) | 328, 487 |
| MaeI | CTAG | 3 cut(s) | 177, 210, 276 |
| MaeIII | GTNAC | 2 cut(s) | 172, 378 |
| MalI | GATC | 4 cut(s) | 216, 237, 252, 315 |
| MbiI | CCGCTC | 1 cut(s) | 397 |
| MboI | GATC | 4 cut(s) | 214, 235, 250, 313 |
| MboII | GAAGA | 2 cut(s) | 212, 454 |
| MfeI | CAATTG | 1 cut(s) | 480 |
| MhlI | GDGCHC | 1 cut(s) | 84 |
| MluCI | AATT | 2 cut(s) | 480, 489 |
| MnlI | CCTC | 4 cut(s) | 62, 65, 234, 382 |
| Mph1103I | ATGCAT | 1 cut(s) | 343 |
| MseI | TTAA | 2 cut(s) | 167, 333 |
| MslI | CAYNNNNRTG | 1 cut(s) | 149 |
| MspI | CCGG | 1 cut(s) | 194 |
| MunI | CAATTG | 1 cut(s) | 480 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 347, 458 |
| NdeII | GATC | 4 cut(s) | 214, 235, 250, 313 |
| NheI | GCTAGC | 1 cut(s) | 209 |
| NlaIII | CATG | 1 cut(s) | 345 |
| NmuCI | GTSAC | 1 cut(s) | 172 |
| NsiI | ATGCAT | 1 cut(s) | 343 |
| PfeI | GAWTC | 3 cut(s) | 119, 356, 412 |
| PkrI | GCNGC | 3 cut(s) | 399, 451, 471 |
| PspPI | GGNCC | 1 cut(s) | 270 |
| RseI | CAYNNNNRTG | 1 cut(s) | 149 |
| SaqAI | TTAA | 2 cut(s) | 167, 333 |
| SatI | GCNGC | 3 cut(s) | 398, 450, 470 |
| Sau3AI | GATC | 4 cut(s) | 214, 235, 250, 313 |
| Sau96I | GGNCC | 1 cut(s) | 270 |
| SduI | GDGCHC | 1 cut(s) | 84 |
| SetI | ASST | 3 cut(s) | 76, 272, 299 |
| SfaNI | GCATC | 2 cut(s) | 328, 487 |
| SfcI | CTRYAG | 1 cut(s) | 401 |
| SinI | GGWCC | 1 cut(s) | 270 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 149 |
| SpeI | ACTAGT | 1 cut(s) | 176 |
| Sse9I | AATT | 2 cut(s) | 480, 489 |
| SsiI | CCGC | 2 cut(s) | 273, 397 |
| SspMI | CTAG | 3 cut(s) | 177, 210, 276 |
| StyI | CCWWGG | 1 cut(s) | 437 |
| TaaI | ACNGT | 3 cut(s) | 188, 202, 384 |
| TaqI | TCGA | 1 cut(s) | 138 |
| TasI | AATT | 2 cut(s) | 480, 489 |
| TauI | GCSGC | 1 cut(s) | 400 |
| TfiI | GAWTC | 3 cut(s) | 119, 356, 412 |
| Tru1I | TTAA | 2 cut(s) | 167, 333 |
| Tru9I | TTAA | 2 cut(s) | 167, 333 |
| TscAI | CASTG | 2 cut(s) | 323, 459 |
| TseFI | GTSAC | 1 cut(s) | 172 |
| TseI | GCWGC | 2 cut(s) | 449, 469 |
| Tsp45I | GTSAC | 1 cut(s) | 172 |
| TspRI | CASTG | 2 cut(s) | 323, 459 |
| VpaK11BI | GGWCC | 1 cut(s) | 270 |
| XspI | CTAG | 3 cut(s) | 177, 210, 276 |
| Zsp2I | ATGCAT | 1 cut(s) | 343 |