ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 410 |
| AciI | CCGC | 1 cut(s) | 408 |
| AclWI | GGATC | 2 cut(s) | 165, 191 |
| AcoI | YGGCCR | 2 cut(s) | 3, 405 |
| AfaI | GTAC | 3 cut(s) | 10, 105, 400 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 28 |
| AgsI | TTSAA | 2 cut(s) | 37, 67 |
| AjnI | CCWGG | 1 cut(s) | 402 |
| AluBI | AGCT | 1 cut(s) | 359 |
| AluI | AGCT | 1 cut(s) | 359 |
| Alw21I | GWGCWC | 1 cut(s) | 211 |
| Alw26I | GTCTC | 1 cut(s) | 324 |
| Alw44I | GTGCAC | 1 cut(s) | 207 |
| AlwI | GGATC | 2 cut(s) | 165, 191 |
| Ama87I | CYCGRG | 1 cut(s) | 321 |
| AoxI | GGCC | 3 cut(s) | 3, 30, 405 |
| ApaLI | GTGCAC | 1 cut(s) | 207 |
| AspS9I | GGNCC | 1 cut(s) | 256 |
| AsuHPI | GGTGA | 1 cut(s) | 144 |
| AvaI | CYCGRG | 1 cut(s) | 321 |
| AvaII | GGWCC | 1 cut(s) | 256 |
| BaeGI | GKGCMC | 1 cut(s) | 211 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BauI | CACGAG | 1 cut(s) | 92 |
| BbsI | GAAGAC | 2 cut(s) | 225, 232 |
| Bbv12I | GWGCWC | 1 cut(s) | 211 |
| BccI | CCATC | 1 cut(s) | 188 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 166, 200 |
| BciT130I | CCWGG | 1 cut(s) | 404 |
| BcoDI | GTCTC | 1 cut(s) | 324 |
| BfaI | CTAG | 3 cut(s) | 120, 146, 314 |
| BfmI | CTRYAG | 1 cut(s) | 55 |
| BisI | GCNGC | 1 cut(s) | 408 |
| BlsI | GCNGC | 1 cut(s) | 409 |
| BmcAI | AGTACT | 1 cut(s) | 10 |
| Bme1390I | CCNGG | 1 cut(s) | 404 |
| Bme18I | GGWCC | 1 cut(s) | 256 |
| BmeT110I | CYCGRG | 1 cut(s) | 321 |
| BmgT120I | GGNCC | 1 cut(s) | 256 |
| BmiI | GGNNCC | 2 cut(s) | 258, 389 |
| BmrFI | CCNGG | 1 cut(s) | 404 |
| BmsI | GCATC | 2 cut(s) | 76, 286 |
| BpiI | GAAGAC | 2 cut(s) | 225, 232 |
| Bpu10I | CCTNAGC | 1 cut(s) | 411 |
| BsaI | GGTCTC | 1 cut(s) | 324 |
| BsaJI | CCNNGG | 2 cut(s) | 402, 425 |
| BsaWI | WCCGGW | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 144, 174 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 28 |
| Bse1I | ACTGG | 2 cut(s) | 6, 346 |
| BseBI | CCWGG | 1 cut(s) | 404 |
| BseDI | CCNNGG | 2 cut(s) | 402, 425 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 28 |
| BseMII | CTCAG | 1 cut(s) | 425 |
| BseNI | ACTGG | 2 cut(s) | 6, 346 |
| BseSI | GKGCMC | 1 cut(s) | 211 |
| BshFI | GGCC | 3 cut(s) | 5, 32, 407 |
| BsiHKAI | GWGCWC | 1 cut(s) | 211 |
| BsiHKCI | CYCGRG | 1 cut(s) | 321 |
| BsiSI | CCGG | 1 cut(s) | 155 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 28 |
| BsmAI | GTCTC | 1 cut(s) | 324 |
| BsnI | GGCC | 3 cut(s) | 5, 32, 407 |
| Bso31I | GGTCTC | 1 cut(s) | 324 |
| BsoBI | CYCGRG | 1 cut(s) | 321 |
| Bsp1286I | GDGCHC | 1 cut(s) | 211 |
| Bsp143I | GATC | 2 cut(s) | 157, 183 |
| Bsp19I | CCATGG | 1 cut(s) | 425 |
| BspACI | CCGC | 1 cut(s) | 408 |
| BspANI | GGCC | 3 cut(s) | 5, 32, 407 |
| BspCNI | CTCAG | 1 cut(s) | 424 |
| BspLI | GGNNCC | 2 cut(s) | 258, 389 |
| BspMAI | CTGCAG | 1 cut(s) | 59 |
| BspPI | GGATC | 2 cut(s) | 165, 191 |
| BspTNI | GGTCTC | 1 cut(s) | 324 |
| BsrBI | CCGCTC | 1 cut(s) | 410 |
| BsrI | ACTGG | 2 cut(s) | 6, 346 |
| BssECI | CCNNGG | 2 cut(s) | 402, 425 |
| BssMI | GATC | 2 cut(s) | 157, 183 |
| BssSI | CACGAG | 1 cut(s) | 92 |
| BssT1I | CCWWGG | 1 cut(s) | 425 |
| Bst2BI | CACGAG | 1 cut(s) | 92 |
| Bst2UI | CCWGG | 1 cut(s) | 404 |
| Bst6I | CTCTTC | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 2 cut(s) | 30, 439 |
| BstDEI | CTNAG | 1 cut(s) | 411 |
| BstDSI | CCRYGG | 1 cut(s) | 425 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 26 |
| BstKTI | GATC | 2 cut(s) | 160, 186 |
| BstMAI | GTCTC | 1 cut(s) | 324 |
| BstMBI | GATC | 2 cut(s) | 157, 183 |
| BstNI | CCWGG | 1 cut(s) | 404 |
| BstSCI | CCNGG | 1 cut(s) | 402 |
| BstSFI | CTRYAG | 1 cut(s) | 55 |
| BstSLI | GKGCMC | 1 cut(s) | 211 |
| BstV2I | GAAGAC | 2 cut(s) | 225, 232 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| BsuRI | GGCC | 3 cut(s) | 5, 32, 407 |
| BtgI | CCRYGG | 1 cut(s) | 425 |
| BtsI | GCAGTG | 1 cut(s) | 209 |
| BtsIMutI | CAGTG | 1 cut(s) | 209 |
| Cac8I | GCNNGC | 2 cut(s) | 30, 439 |
| Cfr13I | GGNCC | 1 cut(s) | 256 |
| Csp6I | GTAC | 3 cut(s) | 9, 104, 399 |
| CviAII | CATG | 2 cut(s) | 25, 426 |
| CviJI | RGCY | 8 cut(s) | 5, 32, 63, 123, 149, 359, 407, 430 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 32, 63, 123, 149, 359, 407, 430 |
| CviQI | GTAC | 3 cut(s) | 9, 104, 399 |
| DdeI | CTNAG | 1 cut(s) | 411 |
| DpnI | GATC | 2 cut(s) | 159, 185 |
| DpnII | GATC | 2 cut(s) | 157, 183 |
| EaeI | YGGCCR | 2 cut(s) | 3, 405 |
| Eam1104I | CTCTTC | 1 cut(s) | 23 |
| EarI | CTCTTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 425 |
| Eco147I | AGGCCT | 1 cut(s) | 32 |
| Eco31I | GGTCTC | 1 cut(s) | 324 |
| Eco47I | GGWCC | 1 cut(s) | 256 |
| Eco88I | CYCGRG | 1 cut(s) | 321 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 26 |
| EcoO109I | RGGNCCY | 1 cut(s) | 256 |
| EcoRII | CCWGG | 1 cut(s) | 402 |
| EcoT14I | CCWWGG | 1 cut(s) | 425 |
| ErhI | CCWWGG | 1 cut(s) | 425 |
| FaeI | CATG | 2 cut(s) | 28, 429 |
| FaiI | YATR | 6 cut(s) | 26, 249, 291, 351, 368, 427 |
| FatI | CATG | 2 cut(s) | 24, 425 |
| Fnu4HI | GCNGC | 1 cut(s) | 408 |
| Fsp4HI | GCNGC | 1 cut(s) | 408 |
| FspBI | CTAG | 3 cut(s) | 120, 146, 314 |
| GluI | GCNGC | 1 cut(s) | 408 |
| HaeIII | GGCC | 3 cut(s) | 5, 32, 407 |
| HapII | CCGG | 1 cut(s) | 155 |
| Hin1II | CATG | 2 cut(s) | 28, 429 |
| HincII | GTYRAC | 1 cut(s) | 110 |
| HindII | GTYRAC | 1 cut(s) | 110 |
| HinfI | GANTC | 1 cut(s) | 370 |
| HpaII | CCGG | 1 cut(s) | 155 |
| HphI | GGTGA | 1 cut(s) | 144 |
| Hpy166II | GTNNAC | 3 cut(s) | 110, 209, 399 |
| Hpy188I | TCNGA | 2 cut(s) | 139, 183 |
| Hpy188III | TCNNGA | 4 cut(s) | 37, 94, 163, 321 |
| Hpy8I | GTNNAC | 3 cut(s) | 110, 209, 399 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4IV | ACGT | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 5 cut(s) | 28, 57, 209, 214, 299 |
| HpyF3I | CTNAG | 1 cut(s) | 411 |
| HpySE526I | ACGT | 1 cut(s) | 106 |
| Hsp92II | CATG | 2 cut(s) | 28, 429 |
| Kzo9I | GATC | 2 cut(s) | 157, 183 |
| LweI | GCATC | 2 cut(s) | 76, 286 |
| MaeI | CTAG | 3 cut(s) | 120, 146, 314 |
| MaeII | ACGT | 1 cut(s) | 106 |
| MalI | GATC | 2 cut(s) | 159, 185 |
| MbiI | CCGCTC | 1 cut(s) | 410 |
| MboI | GATC | 2 cut(s) | 157, 183 |
| MboII | GAAGA | 4 cut(s) | 10, 230, 232, 410 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MhlI | GDGCHC | 1 cut(s) | 211 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 1 cut(s) | 363 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 161 |
| MnlI | CCTC | 8 cut(s) | 26, 32, 53, 101, 160, 178, 247, 317 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 1 cut(s) | 294 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 1 cut(s) | 155 |
| MspR9I | CCNGG | 1 cut(s) | 404 |
| MvaI | CCWGG | 1 cut(s) | 404 |
| NcoI | CCATGG | 1 cut(s) | 425 |
| NdeII | GATC | 2 cut(s) | 157, 183 |
| NlaIII | CATG | 2 cut(s) | 28, 429 |
| NlaIV | GGNNCC | 2 cut(s) | 258, 389 |
| PaeR7I | CTCGAG | 1 cut(s) | 321 |
| PceI | AGGCCT | 1 cut(s) | 32 |
| PfeI | GAWTC | 1 cut(s) | 370 |
| PkrI | GCNGC | 1 cut(s) | 409 |
| PpuMI | RGGWCCY | 1 cut(s) | 256 |
| Psp5II | RGGWCCY | 1 cut(s) | 256 |
| Psp6I | CCWGG | 1 cut(s) | 402 |
| PspGI | CCWGG | 1 cut(s) | 402 |
| PspN4I | GGNNCC | 2 cut(s) | 258, 389 |
| PspPI | GGNCC | 1 cut(s) | 256 |
| PspPPI | RGGWCCY | 1 cut(s) | 256 |
| PstI | CTGCAG | 1 cut(s) | 59 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| RsaI | GTAC | 3 cut(s) | 10, 105, 400 |
| RsaNI | GTAC | 3 cut(s) | 9, 104, 399 |
| RseI | CAYNNNNRTG | 1 cut(s) | 294 |
| SatI | GCNGC | 1 cut(s) | 408 |
| Sau3AI | GATC | 2 cut(s) | 157, 183 |
| Sau96I | GGNCC | 1 cut(s) | 256 |
| ScaI | AGTACT | 1 cut(s) | 10 |
| ScrFI | CCNGG | 1 cut(s) | 404 |
| SduI | GDGCHC | 1 cut(s) | 211 |
| SetI | ASST | 6 cut(s) | 109, 170, 328, 361, 393, 417 |
| SfaNI | GCATC | 2 cut(s) | 76, 286 |
| SfcI | CTRYAG | 1 cut(s) | 55 |
| Sfr274I | CTCGAG | 1 cut(s) | 321 |
| SinI | GGWCC | 1 cut(s) | 256 |
| SlaI | CTCGAG | 1 cut(s) | 321 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 294 |
| SmlI | CTYRAG | 1 cut(s) | 321 |
| SmoI | CTYRAG | 1 cut(s) | 321 |
| Sse9I | AATT | 1 cut(s) | 363 |
| SseBI | AGGCCT | 1 cut(s) | 32 |
| SsiI | CCGC | 1 cut(s) | 408 |
| SspMI | CTAG | 3 cut(s) | 120, 146, 314 |
| StuI | AGGCCT | 1 cut(s) | 32 |
| StyD4I | CCNGG | 1 cut(s) | 402 |
| StyI | CCWWGG | 1 cut(s) | 425 |
| TaiI | ACGT | 1 cut(s) | 109 |
| TaqI | TCGA | 3 cut(s) | 192, 271, 322 |
| TasI | AATT | 1 cut(s) | 363 |
| TatI | WGTACW | 1 cut(s) | 8 |
| TauI | GCSGC | 1 cut(s) | 410 |
| TfiI | GAWTC | 1 cut(s) | 370 |
| TscAI | CASTG | 1 cut(s) | 216 |
| TspDTI | ATGAA | 1 cut(s) | 383 |
| TspGWI | ACGGA | 1 cut(s) | 89 |
| TspRI | CASTG | 1 cut(s) | 216 |
| VneI | GTGCAC | 1 cut(s) | 207 |
| VpaK11BI | GGWCC | 1 cut(s) | 256 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 26 |
| XhoI | CTCGAG | 1 cut(s) | 321 |
| XspI | CTAG | 3 cut(s) | 120, 146, 314 |
| ZrmI | AGTACT | 1 cut(s) | 10 |